Rh1AG166200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002163
Physical Location & Seq
Reverse (-)
31665102 .. 31678857
13756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG166200.1

Sequence Viewer

Length: 636 bp
ATGGAGCAGGGGTCTCATTCATCATCATCCTCTTCAGATGATGAACGTACTATATCTGACACATTGGGTTCTCATGTCAGCAATACCATTATCAATCAATCAACTTCATTGGTGCGCAGGCCTTGGCACCGTTTGGTTGAGGAGGAACAAGAGGGTGATTTGAGTGATTCAAGTGCTACTCAGATACAGGGACCTCATATTCGTTCGTCAAAACATGTTAATGCTGTTTTAGAGCAAGGAAATTTCCACGGCTTCTCCTCTTCTCACAGTTCCAAAAAAATTTTCAGAACCCAAATCCTTCCCTCCGATGAACCATGTCAAGAATTTGACAACCCATGTCAAGAATTTGATATCAAACACGTCTTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCGCCAGAGACCCAAAATAATATCCTCCGCGGTCCCCGCCGCTCTCCACCACCTCCTACACCGTCGCGCTCCACCTCCTACGCCCTCTTTGGAAAGGTAACAGACAAAACAAGCTTCAGGAAATTTGTAGTTGAGAGCATATTTTGGCTGATGCTTTATGCAAGTCCTGCTGCATATTGTTATTCTAGTACTTGTGGAGGTCTACTTTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.58

Weight (kDa)

5.82

Isoelectric Point (pI)

70.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 126
AccBSI CCGCTC 1 cut(s) 462
AccI GTMKAC 1 cut(s) 622
AccII CGCG 2 cut(s) 450, 487
AccIII TCCGGA 1 cut(s) 409
AciI CCGC 5 cut(s) 422, 448, 450, 457, 460
AcsI RAATTY 5 cut(s) 241, 279, 323, 344, 542
AcuI CTGAAG 2 cut(s) 18, 520
AfaI GTAC 2 cut(s) 49, 610
AflIII ACRYGT 2 cut(s) 214, 358
AgsI TTSAA 1 cut(s) 171
AjiI CACGTC 1 cut(s) 361
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 1 cut(s) 534
AluI AGCT 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 18, 422
Aor13HI TCCGGA 1 cut(s) 409
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 5 cut(s) 241, 279, 323, 344, 542
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
AspLEI GCGC 2 cut(s) 117, 489
AspS9I GGNCC 2 cut(s) 191, 452
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 2 cut(s) 191, 452
BanI GGYRCC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 577
BceAI ACGGC 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 18, 422
BfaI CTAG 1 cut(s) 606
BisI GCNGC 2 cut(s) 460, 591
BlsI GCNGC 2 cut(s) 461, 592
BmcAI AGTACT 1 cut(s) 610
Bme18I GGWCC 2 cut(s) 191, 452
BmgBI CACGTC 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 191, 452
BmiI GGNNCC 3 cut(s) 128, 192, 454
BmrI ACTGGG 1 cut(s) 392
BmsI GCATC 1 cut(s) 561
BmuI ACTGGG 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 355
BsaI GGTCTC 2 cut(s) 18, 422
BsaJI CCNNGG 3 cut(s) 122, 247, 448
BsaWI WCCGGW 1 cut(s) 409
BsaXI ACNNNNNCTCC 3 cut(s) 26, 239, 269
Bse1I ACTGG 1 cut(s) 398
BseAI TCCGGA 1 cut(s) 409
BseDI CCNNGG 3 cut(s) 122, 247, 448
BseGI GGATG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 2 cut(s) 155, 247
BseXI GCAGC 1 cut(s) 577
Bsh1236I CGCG 2 cut(s) 450, 487
BshFI GGCC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 2 cut(s) 204, 438
BsmAI GTCTC 2 cut(s) 18, 422
BsmFI GGGAC 2 cut(s) 204, 438
BsnI GGCC 1 cut(s) 121
Bso31I GGTCTC 2 cut(s) 18, 422
Bsp13I TCCGGA 1 cut(s) 409
BspACI CCGC 5 cut(s) 422, 448, 450, 457, 460
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 193
BspEI TCCGGA 1 cut(s) 409
BspFNI CGCG 2 cut(s) 450, 487
BspLI GGNNCC 3 cut(s) 128, 192, 454
BspT107I GGYRCC 1 cut(s) 126
BspTNI GGTCTC 2 cut(s) 18, 422
BsrBI CCGCTC 1 cut(s) 462
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 3 cut(s) 122, 247, 448
BssT1I CCWWGG 1 cut(s) 122
Bst4CI ACNGT 3 cut(s) 131, 269, 483
Bst6I CTCTTC 3 cut(s) 37, 265, 373
BstAPI GCANNNNNTGC 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 180, 633
BstDSI CCRYGG 2 cut(s) 247, 448
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 2 cut(s) 450, 487
BstHHI GCGC 2 cut(s) 117, 489
BstMAI GTCTC 2 cut(s) 18, 422
BstMWI GCNNNNNNNGC 2 cut(s) 456, 587
BstNSI RCATGY 1 cut(s) 218
BstUI CGCG 2 cut(s) 450, 487
BstV1I GCAGC 1 cut(s) 577
BstV2I GAAGAC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 2 cut(s) 247, 448
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 2 cut(s) 117, 489
Cfr13I GGNCC 2 cut(s) 191, 452
Cfr42I CCGCGG 1 cut(s) 451
Csp6I GTAC 2 cut(s) 48, 609
CviAII CATG 4 cut(s) 74, 215, 315, 336
CviJI RGCY 4 cut(s) 121, 252, 534, 568
CviKI_1 RGCY 4 cut(s) 121, 252, 534, 568
CviQI GTAC 2 cut(s) 48, 609
DdeI CTNAG 2 cut(s) 180, 633
Eam1104I CTCTTC 3 cut(s) 37, 265, 373
EarI CTCTTC 3 cut(s) 37, 265, 373
Eco130I CCWWGG 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 121
Eco31I GGTCTC 2 cut(s) 18, 422
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 191, 452
Eco57I CTGAAG 2 cut(s) 18, 520
EcoO109I RGGNCCY 1 cut(s) 191
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 4 cut(s) 77, 218, 318, 339
FaiI YATR 9 cut(s) 53, 75, 198, 216, 316, 337, 560, 579, 595
FaqI GGGAC 2 cut(s) 204, 438
FatI CATG 4 cut(s) 73, 214, 314, 335
FauI CCCGC 2 cut(s) 429, 464
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 2 cut(s) 460, 591
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 460, 591
FspBI CTAG 1 cut(s) 606
FspI TGCGCA 1 cut(s) 116
GlaI GCGC 2 cut(s) 116, 488
GluI GCNGC 2 cut(s) 460, 591
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 410
HhaI GCGC 2 cut(s) 117, 489
Hin1II CATG 4 cut(s) 77, 218, 318, 339
Hin6I GCGC 2 cut(s) 115, 487
HinP1I GCGC 2 cut(s) 115, 487
HindIII AAGCTT 1 cut(s) 532
HinfI GANTC 2 cut(s) 167, 413
HpaII CCGG 1 cut(s) 410
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 623
Hpy188I TCNGA 5 cut(s) 37, 58, 183, 287, 307
Hpy188III TCNNGA 4 cut(s) 320, 341, 410, 538
Hpy8I GTNNAC 1 cut(s) 623
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 3 cut(s) 131, 269, 483
HpyCH4IV ACGT 2 cut(s) 46, 360
HpyCH4V TGCA 3 cut(s) 391, 581, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 456, 587
HpyF3I CTNAG 2 cut(s) 180, 633
HpySE526I ACGT 2 cut(s) 46, 360
Hsp92II CATG 4 cut(s) 77, 218, 318, 339
HspAI GCGC 2 cut(s) 115, 487
Kpn2I TCCGGA 1 cut(s) 409
KspI CCGCGG 1 cut(s) 451
LmnI GCTCC 2 cut(s) 4, 494
LpnPI CCDG 8 cut(s) 103, 173, 393, 411, 423, 438, 523, 600
Lsp1109I GCAGC 1 cut(s) 577
LweI GCATC 1 cut(s) 561
MaeI CTAG 1 cut(s) 606
MaeII ACGT 2 cut(s) 46, 360
MaeIII GTNAC 1 cut(s) 517
MbiI CCGCTC 1 cut(s) 462
MboII GAAGA 5 cut(s) 24, 252, 355, 360, 395
MluCI AATT 6 cut(s) 241, 279, 323, 344, 386, 542
MroI TCCGGA 1 cut(s) 409
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 1 cut(s) 410
MvnI CGCG 2 cut(s) 450, 487
MwoI GCNNNNNNNGC 2 cut(s) 456, 587
NlaIII CATG 4 cut(s) 77, 218, 318, 339
NlaIV GGNNCC 3 cut(s) 128, 192, 454
NsbI TGCGCA 1 cut(s) 116
NspI RCATGY 1 cut(s) 218
PceI AGGCCT 1 cut(s) 121
PciI ACATGT 1 cut(s) 214
PfeI GAWTC 2 cut(s) 167, 413
PkrI GCNGC 2 cut(s) 461, 592
PpuMI RGGWCCY 1 cut(s) 191
PscI ACATGT 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 128, 192, 454
PspPI GGNCC 2 cut(s) 191, 452
PspPPI RGGWCCY 1 cut(s) 191
RsaI GTAC 2 cut(s) 49, 610
RsaNI GTAC 2 cut(s) 48, 609
RseI CAYNNNNRTG 1 cut(s) 219
SacII CCGCGG 1 cut(s) 451
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 460, 591
Sau96I GGNCC 2 cut(s) 191, 452
ScaI AGTACT 1 cut(s) 610
SetI ASST 8 cut(s) 49, 196, 363, 475, 497, 519, 536, 622
SfaNI GCATC 1 cut(s) 561
Sfr303I CCGCGG 1 cut(s) 451
SgrBI CCGCGG 1 cut(s) 451
SinI GGWCC 2 cut(s) 191, 452
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 6 cut(s) 241, 279, 323, 344, 386, 542
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 5 cut(s) 422, 448, 450, 457, 460
SspMI CTAG 1 cut(s) 606
StuI AGGCCT 1 cut(s) 121
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 3 cut(s) 131, 269, 483
TaiI ACGT 2 cut(s) 49, 363
TasI AATT 6 cut(s) 241, 279, 323, 344, 386, 542
TatI WGTACW 1 cut(s) 608
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 2 cut(s) 167, 413
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 1 cut(s) 590
TspDTI ATGAA 4 cut(s) 9, 57, 96, 324
VpaK11BI GGWCC 2 cut(s) 191, 452
XapI RAATTY 5 cut(s) 241, 279, 323, 344, 542
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 622
XspI CTAG 1 cut(s) 606
ZrmI AGTACT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.