Rh6CG508600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002163
Physical Location & Seq
Forward (+)
66935158 .. 66937198
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG508600.1

Sequence Viewer

Length: 1029 bp
ATGGATCGCTGCAAACGTCTTATTAAGAAGCAGGCTAAGGCTCCTACTTATTCTAAAGGGGTTGTTGGCACTGATCGTCAAAAGCCTATGATTAGGCAAGTGTTCAGAGTCAGGTCCAAACCTCAAGTTGCAGAACAGCCTACTACTGATGATCAATCTAATAAAGAAGCCACAATTGCAAACTTTGCTGACAATGTTATTCAAGAGGCTGTGAACCAGGAACTTTCCCGAATTGCTGATGTGGTTGTCAATGAAACCATTGTCAATCGTGTGGATATTCCTGCAGAGCCTGTGTTACAGCAGTTTTCCTCCAAGAGAATGGAGCAGGAGTCTCATTCATCATCATCCTCTTCAGATGATGAACGTACTATCTCTGACACATTGGGTTCTCATGTCAGCAATACCATTATCAACAAATCCACCCCTTTGGAGCGTAGGCCTTGGCACCAACTGGTTGAGGAAACTCAGGAGGGTGTTTTGAGTGATTCAAGTGCTACTCAGGTCCAGGGGCCTCTTATTCGTTCGTCGAATCAGGTCAATGCTGCTTTAGAGCAAGGGAGTATTAGTGAAGATTCTTTTAATCTAGCTCTTCAAGCCCAAAAGCAAAGTCAGGATTGGGAATCATTACAGCCAAGAGACCGACCTTGTGTCGTTTCCCGATCAATCAGCCACACCGGCGCTCAGACCACCAGACTGGTCCCTGTCGTCCAGACCGCCGGCTCCTTCTGTTCAGACCGGCTTCGTCTCCCTTCCAGATCGGAATCCTTCCCCGTCCAGATCGGCTTCGTCCCCTACCCAGACCGCCGCCGTCTTCAGTCATTCGGACCCAGTCCCCGGCGTCGTTGTGATTACCAGATCGTCGTCGTCGGGCTTCCTCAGTTCAGGCCGTCGTCGGGCTTCCTCAGTTCAGGCCGGCGTCGTTCCTTCAGTTCAGGCCGCCGCTCATCTTCTCCAGATACCGAGACCCACCACAGCCAACCAAAACACCCAGAAACTGAAACAAGAGGAACAGAGCCTGGGAACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

38.13

Weight (kDa)

9.27

Isoelectric Point (pI)

75.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 444
AccBSI CCGCTC 1 cut(s) 942
AciI CCGC 5 cut(s) 714, 802, 805, 937, 940
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 3 cut(s) 336, 797, 910
AcyI GRCGYC 2 cut(s) 838, 916
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 834, 893
AgsI TTSAA 3 cut(s) 203, 489, 593
AhdI GACNNNNNGTC 1 cut(s) 647
AjnI CCWGG 3 cut(s) 216, 504, 1015
AluBI AGCT 1 cut(s) 587
AluI AGCT 1 cut(s) 587
Alw26I GTCTC 4 cut(s) 336, 630, 749, 956
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 3 cut(s) 290, 995, 1016
AoxI GGCC 5 cut(s) 437, 509, 884, 910, 934
ApeKI GCWGC 2 cut(s) 9, 542
ArsI GACNNNNNNTTYG 2 cut(s) 592, 624
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 5 cut(s) 114, 502, 509, 697, 824
AsuC2I CCSGG 1 cut(s) 835
AvaII GGWCC 4 cut(s) 114, 502, 697, 824
BanI GGYRCC 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 803
BbvI GCAGC 1 cut(s) 529
BceAI ACGGC 2 cut(s) 792, 871
BciT130I CCWGG 3 cut(s) 218, 506, 1017
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 1 cut(s) 835
BcoDI GTCTC 4 cut(s) 336, 630, 749, 956
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 681
BglI GCCNNNNNGGC 1 cut(s) 675
BisI GCNGC 5 cut(s) 10, 543, 805, 937, 940
BlsI GCNGC 5 cut(s) 11, 544, 806, 938, 941
Bme1390I CCNGG 4 cut(s) 218, 506, 835, 1017
Bme18I GGWCC 4 cut(s) 114, 502, 697, 824
BmeRI GACNNNNNGTC 1 cut(s) 647
BmgT120I GGNCC 5 cut(s) 114, 502, 509, 697, 824
BmiI GGNNCC 6 cut(s) 42, 446, 510, 699, 721, 826
BmrFI CCNGG 4 cut(s) 218, 506, 835, 1017
BmrI ACTGGG 1 cut(s) 822
BmuI ACTGGG 1 cut(s) 822
BpiI GAAGAC 1 cut(s) 803
BpmI CTGGAG 1 cut(s) 936
Bpu10I CCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 835
BsaBI GATNNNNATC 1 cut(s) 760
BsaHI GRCGYC 2 cut(s) 838, 916
BsaI GGTCTC 2 cut(s) 630, 956
BsaJI CCNNGG 4 cut(s) 440, 505, 833, 1016
BsaXI ACNNNNNCTCC 4 cut(s) 314, 344, 550, 580
Bsc4I CCNNNNNNNGG 2 cut(s) 834, 893
Bse118I RCCGGY 4 cut(s) 674, 716, 735, 912
Bse1I ACTGG 3 cut(s) 456, 699, 828
Bse8I GATNNNNATC 1 cut(s) 760
BseBI CCWGG 3 cut(s) 218, 506, 1017
BseDI CCNNGG 4 cut(s) 440, 505, 833, 1016
BseGI GGATG 1 cut(s) 344
BseJI GATNNNNATC 1 cut(s) 760
BseLI CCNNNNNNNGG 2 cut(s) 834, 893
BseMII CTCAG 5 cut(s) 479, 512, 695, 890, 916
BseNI ACTGG 3 cut(s) 456, 699, 828
BseXI GCAGC 1 cut(s) 529
BshFI GGCC 5 cut(s) 439, 511, 886, 912, 936
BshNI GGYRCC 1 cut(s) 444
BsiSI CCGG 5 cut(s) 675, 717, 736, 835, 913
BslFI GGGAC 3 cut(s) 683, 773, 816
BslI CCNNNNNNNGG 2 cut(s) 834, 893
BsmAI GTCTC 4 cut(s) 336, 630, 749, 956
BsmBI CGTCTC 1 cut(s) 749
BsmFI GGGAC 3 cut(s) 683, 773, 816
BsnI GGCC 5 cut(s) 439, 511, 886, 912, 936
Bso31I GGTCTC 2 cut(s) 630, 956
Bsp143I GATC 7 cut(s) 4, 73, 151, 659, 755, 777, 855
BspACI CCGC 5 cut(s) 714, 802, 805, 937, 940
BspANI GGCC 5 cut(s) 439, 511, 886, 912, 936
BspCNI CTCAG 5 cut(s) 478, 511, 694, 889, 915
BspLI GGNNCC 6 cut(s) 42, 446, 510, 699, 721, 826
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 444
BspTNI GGTCTC 2 cut(s) 630, 956
BsrBI CCGCTC 1 cut(s) 942
BsrFI RCCGGY 4 cut(s) 674, 716, 735, 912
BsrI ACTGG 3 cut(s) 456, 699, 828
BssAI RCCGGY 4 cut(s) 674, 716, 735, 912
BssECI CCNNGG 4 cut(s) 440, 505, 833, 1016
BssMI GATC 7 cut(s) 4, 73, 151, 659, 755, 777, 855
BssNI GRCGYC 2 cut(s) 838, 916
BssT1I CCWWGG 1 cut(s) 440
Bst2UI CCWGG 3 cut(s) 218, 506, 1017
Bst6I CTCTTC 2 cut(s) 355, 594
BstACI GRCGYC 2 cut(s) 838, 916
BstAPI GCANNNNNTGC 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 33, 718, 914
BstDEI CTNAG 6 cut(s) 36, 465, 498, 681, 876, 902
BstF5I GGATG 1 cut(s) 344
BstH2I RGCGCY 1 cut(s) 681
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 7 cut(s) 7, 76, 154, 662, 758, 780, 858
BstMAI GTCTC 4 cut(s) 336, 630, 749, 956
BstMBI GATC 7 cut(s) 4, 73, 151, 659, 755, 777, 855
BstMWI GCNNNNNNNGC 4 cut(s) 176, 185, 593, 675
BstNI CCWGG 3 cut(s) 218, 506, 1017
BstSCI CCNGG 4 cut(s) 216, 504, 833, 1015
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 529
BstV2I GAAGAC 1 cut(s) 803
BstXI CCANNNNNNTGG 3 cut(s) 319, 427, 694
BsuRI GGCC 5 cut(s) 439, 511, 886, 912, 936
BtsCI GGATG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 3 cut(s) 33, 718, 914
CaiI CAGNNNCTG 3 cut(s) 290, 995, 1016
CfoI GCGC 1 cut(s) 680
Cfr10I RCCGGY 4 cut(s) 674, 716, 735, 912
Cfr13I GGNCC 5 cut(s) 114, 502, 509, 697, 824
CseI GACGC 2 cut(s) 827, 905
Csp6I GTAC 1 cut(s) 366
CviAII CATG 1 cut(s) 392
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 6 cut(s) 36, 465, 498, 681, 876, 902
DpnI GATC 7 cut(s) 6, 75, 153, 661, 757, 779, 857
DpnII GATC 7 cut(s) 4, 73, 151, 659, 755, 777, 855
DriI GACNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 2 cut(s) 355, 594
Eam1105I GACNNNNNGTC 1 cut(s) 647
EarI CTCTTC 2 cut(s) 355, 594
Eco130I CCWWGG 1 cut(s) 440
Eco147I AGGCCT 1 cut(s) 439
Eco31I GGTCTC 2 cut(s) 630, 956
Eco47I GGWCC 4 cut(s) 114, 502, 697, 824
Eco57I CTGAAG 3 cut(s) 336, 797, 910
EcoO109I RGGNCCY 1 cut(s) 509
EcoRII CCWGG 3 cut(s) 216, 504, 1015
EcoT14I CCWWGG 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 440
Esp3I CGTCTC 1 cut(s) 749
FaeI CATG 1 cut(s) 395
FaiI YATR 2 cut(s) 89, 393
FaqI GGGAC 3 cut(s) 683, 773, 816
FatI CATG 1 cut(s) 391
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 5 cut(s) 10, 543, 805, 937, 940
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 5 cut(s) 10, 543, 805, 937, 940
FspBI CTAG 1 cut(s) 584
GlaI GCGC 1 cut(s) 679
GluI GCNGC 5 cut(s) 10, 543, 805, 937, 940
GsuI CTGGAG 1 cut(s) 936
HaeII RGCGCY 1 cut(s) 681
HaeIII GGCC 5 cut(s) 439, 511, 886, 912, 936
HapII CCGG 5 cut(s) 675, 717, 736, 835, 913
HgaI GACGC 2 cut(s) 827, 905
HhaI GCGC 1 cut(s) 680
Hin1I GRCGYC 2 cut(s) 838, 916
Hin1II CATG 1 cut(s) 395
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HinfI GANTC 7 cut(s) 108, 329, 485, 529, 572, 620, 761
HpaII CCGG 5 cut(s) 675, 717, 736, 835, 913
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 7 cut(s) 107, 355, 376, 684, 733, 760, 824
Hpy188III TCNNGA 9 cut(s) 203, 228, 467, 611, 657, 709, 753, 775, 953
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 8 cut(s) 529, 843, 863, 866, 869, 892, 895, 921
HpyAV CCTTC 4 cut(s) 733, 759, 775, 934
HpyCH4IV ACGT 2 cut(s) 16, 364
HpyCH4V TGCA 4 cut(s) 12, 131, 179, 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 185, 593, 675
HpyF3I CTNAG 6 cut(s) 36, 465, 498, 681, 876, 902
HpySE526I ACGT 2 cut(s) 16, 364
Hsp92I GRCGYC 2 cut(s) 838, 916
Hsp92II CATG 1 cut(s) 395
HspAI GCGC 1 cut(s) 678
KroI GCCGGC 2 cut(s) 716, 912
KroNI GCCGGC 2 cut(s) 718, 914
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 7 cut(s) 4, 73, 151, 659, 755, 777, 855
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 4 cut(s) 46, 322, 430, 725
Lsp1109I GCAGC 1 cut(s) 529
MaeI CTAG 1 cut(s) 584
MaeII ACGT 2 cut(s) 16, 364
MaeIII GTNAC 1 cut(s) 294
MalI GATC 7 cut(s) 6, 75, 153, 661, 757, 779, 857
MbiI CCGCTC 1 cut(s) 942
MboI GATC 7 cut(s) 4, 73, 151, 659, 755, 777, 855
MboII GAAGA 5 cut(s) 342, 581, 581, 803, 939
MfeI CAATTG 1 cut(s) 174
MluCI AATT 2 cut(s) 174, 231
MlyI GAGTC 2 cut(s) 117, 338
MroNI GCCGGC 2 cut(s) 716, 912
MseI TTAA 3 cut(s) 24, 579, 1027
MspI CCGG 5 cut(s) 675, 717, 736, 835, 913
MspR9I CCNGG 4 cut(s) 218, 506, 835, 1017
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 3 cut(s) 218, 506, 1017
MwoI GCNNNNNNNGC 4 cut(s) 176, 185, 593, 675
NaeI GCCGGC 2 cut(s) 718, 914
NciI CCSGG 1 cut(s) 835
NdeII GATC 7 cut(s) 4, 73, 151, 659, 755, 777, 855
NgoMIV GCCGGC 2 cut(s) 716, 912
NlaIII CATG 1 cut(s) 395
NlaIV GGNNCC 6 cut(s) 42, 446, 510, 699, 721, 826
PceI AGGCCT 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 594
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PdiI GCCGGC 2 cut(s) 718, 914
PfeI GAWTC 5 cut(s) 485, 529, 572, 620, 761
PflFI GACNNNGTC 1 cut(s) 828
PkrI GCNGC 5 cut(s) 11, 544, 806, 938, 941
PleI GAGTC 2 cut(s) 116, 337
PpsI GAGTC 2 cut(s) 116, 337
Psp6I CCWGG 3 cut(s) 216, 504, 1015
PspGI CCWGG 3 cut(s) 216, 504, 1015
PspN4I GGNNCC 6 cut(s) 42, 446, 510, 699, 721, 826
PspPI GGNCC 5 cut(s) 114, 502, 509, 697, 824
PstI CTGCAG 1 cut(s) 286
PstNI CAGNNNCTG 3 cut(s) 290, 995, 1016
PsyI GACNNNGTC 1 cut(s) 828
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 3 cut(s) 24, 579, 1027
SatI GCNGC 5 cut(s) 10, 543, 805, 937, 940
Sau3AI GATC 7 cut(s) 4, 73, 151, 659, 755, 777, 855
Sau96I GGNCC 5 cut(s) 114, 502, 509, 697, 824
SchI GAGTC 2 cut(s) 117, 338
ScrFI CCNGG 4 cut(s) 218, 506, 835, 1017
SetI ASST 8 cut(s) 19, 116, 124, 367, 504, 537, 589, 646
SfcI CTRYAG 1 cut(s) 282
SgrAI CRCCGGYG 1 cut(s) 674
SinI GGWCC 4 cut(s) 114, 502, 697, 824
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 2 cut(s) 174, 231
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 5 cut(s) 714, 802, 805, 937, 940
SspMI CTAG 1 cut(s) 584
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 4 cut(s) 216, 504, 833, 1015
StyI CCWWGG 1 cut(s) 440
TaiI ACGT 2 cut(s) 19, 367
TaqI TCGA 1 cut(s) 527
TaqII GACCGA 1 cut(s) 654
TasI AATT 2 cut(s) 174, 231
TauI GCSGC 3 cut(s) 807, 939, 942
TfiI GAWTC 5 cut(s) 485, 529, 572, 620, 761
Tru1I TTAA 3 cut(s) 24, 579, 1027
Tru9I TTAA 3 cut(s) 24, 579, 1027
TscAI CASTG 1 cut(s) 76
TseI GCWGC 2 cut(s) 9, 542
TspDTI ATGAA 3 cut(s) 267, 327, 375
TspRI CASTG 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 828
VpaK11BI GGWCC 4 cut(s) 114, 502, 697, 824
XspI CTAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.