Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002163

Physical Location & Seq

Genomic Coordinates Forward (+)

14453792 .. 14468617

Gene Structure 14826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG122200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTCAAATCCCTTTCACACAATCTAAAATTTTCCTTGATTTTCAGTTTTACTCGATTTGGCCAAGTTCTTCTACAGCCAGATCCCTTCCTTAATGAACATACCAGCATGTTTGAGAAAAGCACTGAGAAGGGAACCCAAATCCTTCCCTCCGATGAACCATGTCAAGAATTTGATATCAAACACGTCTTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCGCCAGAGACCCAAAATAATAGCCTCTGCGGTCCCCGTCGCTCTCCAGCTCCGACGCCGTCGCTCTCCACCACCTACACCCTCTCTGGAAAGTTACAAACACGTGGACATCATGGAAAATACATCAGAGGAATGGAAGTTTTTCCCAACAAAAACACAAATGGCATATATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko00670 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map00670 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_T GCV_T_C

Protein Analysis

140

Amino Acids

15.9

Weight (kDa)

7.01

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002163)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0297061 RchiOBHm_Chr7g0200861 RchiOBHm_Chr7g0230581
rosa_laevigata	RLG00000007368 RLG00000011884 RLG00000013442 RLG00000017274 RLG00000017275 RLG00000017988 RLG00000034354
rosa_multiflora	Rmu_sc0001750.1_g000005 Rmu_sc0004217.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047140 Rroxscaffold_2G00119870 Rroxscaffold_3G00251030 Rroxscaffold_4G00327060 Rroxscaffold_7G00214510
rosa_rugosa	Rorug02G0595700 Rorug02G0595700 Rorug03G0060600 Rorug03G0060700.1 Rorug03G0060800.1 Rorug05G0392400
rosa_samantha	Rh1AG166100 Rh1AG166200 Rh1AG166300 Rh1BG311800 Rh1CG154700 Rh1DG058100 Rh1DG343500 Rh2AG239200 Rh2AG239300 Rh2AG319700 Rh2CG016900 Rh3CG322700 Rh3DG271400 Rh4DG201000 Rh5DG159900 Rh6CG122200 Rh6CG122300 Rh6CG508600 Rh6DG109500 Rh7CG486800 Rh7DG455200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	2 cut(s)	248, 276
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	29, 170
AcvI	CACGTG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	302
AflIII	ACRYGT	2 cut(s)	184, 347
AgsI	TTSAA	1 cut(s)	7
AjiI	CACGTC	1 cut(s)	187
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	1 cut(s)	61
ApoI	RAATTY	2 cut(s)	29, 170
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	63
BbrPI	CACGTG	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	278
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	136, 280
BmrI	ACTGGG	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	224
BseAI	TCCGGA	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	63
Bso31I	GGTCTC	1 cut(s)	248
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	2 cut(s)	248, 276
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	118
BspEI	TCCGGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	136, 280
BspPI	GGATC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	82
BssNI	GRCGYC	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	278
CseI	GACGC	1 cut(s)	310
CviAII	CATG	3 cut(s)	109, 162, 359
CviJI	RGCY	4 cut(s)	63, 79, 270, 296
CviKI_1	RGCY	4 cut(s)	63, 79, 270, 296
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	248
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	278
Eco72I	CACGTG	1 cut(s)	350
EcoRV	GATATC	1 cut(s)	178
FaeI	CATG	3 cut(s)	112, 165, 362
FaiI	YATR	6 cut(s)	102, 110, 163, 360, 413, 415
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	3 cut(s)	108, 161, 358
FauI	CCCGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	236
HgaI	GACGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	112, 165, 362
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	3 cut(s)	154, 300, 374
Hpy188III	TCNNGA	3 cut(s)	167, 236, 333
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	3 cut(s)	288, 304, 310
HpyAV	CCTTC	3 cut(s)	97, 124, 155
HpyCH4IV	ACGT	2 cut(s)	186, 349
HpyCH4V	TGCA	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	186, 349
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	112, 165, 362
Kpn2I	TCCGGA	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	8 cut(s)	93, 118, 219, 237, 249, 264, 306, 318
MaeII	ACGT	2 cut(s)	186, 349
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	4 cut(s)	62, 181, 186, 221
MflI	RGATCY	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	3 cut(s)	29, 170, 212
MluNI	TGGCCA	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	4 cut(s)	160, 281, 338, 368
Mox20I	TGGCCA	1 cut(s)	63
MroI	TCCGGA	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	63
MspI	CCGG	1 cut(s)	236
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	3 cut(s)	112, 165, 362
NlaIV	GGNNCC	2 cut(s)	136, 280
NspI	RCATGY	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	239
PflFI	GACNNNGTC	1 cut(s)	304
PmaCI	CACGTG	1 cut(s)	350
PmlI	CACGTG	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	350
PspCI	CACGTG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	136, 280
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	82
PsyI	GACNNNGTC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	278
SetI	ASST	4 cut(s)	189, 298, 323, 352
SfcI	CTRYAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	3 cut(s)	29, 170, 212
SsiI	CCGC	2 cut(s)	248, 276
TaiI	ACGT	2 cut(s)	189, 352
TaqI	TCGA	1 cut(s)	55
TasI	AATT	3 cut(s)	29, 170, 212
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	111, 171
TspRI	CASTG	1 cut(s)	130
Tth111I	GACNNNGTC	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	2 cut(s)	29, 170
XceI	RCATGY	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.