RLG00000007368

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002163
Physical Location & Seq
Forward (+)
16152908 .. 16156531
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007368

Sequence Viewer

Length: 759 bp
ATGTTGGTTCTAGATCAATCTATCAAGAGACTCTGTCCTTCTCTCGCTATCTATTGGACAACGCCAGGGTCAAACAGTGTCGGTAGGCATCAAGACACTCGCGATGTGTGCTGGTTTTTAAAATCACTGGGGGTTATCGCATCTCACCAATGTACAGGTGCAGACGCCCGCATTTTTGCTTTGGGTCTTTTAGAATTGGTAGCCTCAGGCATTGGGCTTTGGGTGTTTTGGGTAACATGTCAACCCTCCCACCCCGTCTTCTCCTCTTCTCTCAGTCCCAAAAAAATTTCAGAACTCAAATCCTTCCCTCCGGTGAACCATGTCAAGAATTTGATATCAAACACGTCTTCTCTTCTCAATACCCAGAAAAATTGCTCTAGTTCTCATTCTGGATTCGTTCCCCCCCAGAGACCTAAAATAATAGCCTCTGCGGTCGCCGTCTTCTCTCCACACCACCTCCTATGCCGTCGCTCTCCACCACCTCCTACGCCGTCGCGCTACACCTCCTACGCCCTATTTGGAAAGAGTTCATGCATTCTTGGTTCTAAGATACAGCAAAATGGTGATCAAGAAGAAGCTCCAGCCAATTTGCACTCTCCTAGCCTAAATATGACAGATGTTGTCGGGGTGCCTGTGAAATGTAACATTGTCTCAACAGGAGGTGGTGGAGAAAAGATGGTGACCGCGGAGGCTATTATTTTGGGTCTCCGGCGGGAACGAATCCAGAATGAGAACTGGAGCAATTTTTCTAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.42

Weight (kDa)

9.4

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 628
AccII CGCG 3 cut(s) 102, 496, 686
AciI CCGC 5 cut(s) 169, 431, 684, 686, 712
AcsI RAATTY 2 cut(s) 285, 328
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 1 cut(s) 154
AflIII ACRYGT 2 cut(s) 236, 342
AjiI CACGTC 1 cut(s) 345
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 578
AluI AGCT 1 cut(s) 578
Alw26I GTCTC 4 cut(s) 22, 403, 655, 710
ApoI RAATTY 2 cut(s) 285, 328
Asp700I GAANNNNTTC 1 cut(s) 526
AspLEI GCGC 1 cut(s) 498
AsuHPI GGTGA 4 cut(s) 137, 325, 575, 691
AxyI CCTNAGG 1 cut(s) 205
BanI GGYRCC 1 cut(s) 628
BbsI GAAGAC 3 cut(s) 250, 339, 433
BccI CCATC 1 cut(s) 670
BceAI ACGGC 3 cut(s) 422, 450, 475
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 1 cut(s) 565
BcoDI GTCTC 4 cut(s) 22, 403, 655, 710
BfaI CTAG 4 cut(s) 11, 378, 600, 750
Bme1390I CCNGG 1 cut(s) 66
BmgBI CACGTC 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 2 cut(s) 97, 149
BmuI ACTGGG 1 cut(s) 137
BpiI GAAGAC 3 cut(s) 250, 339, 433
BpmI CTGGAG 2 cut(s) 564, 757
BsaHI GRCGYC 1 cut(s) 165
BsaI GGTCTC 2 cut(s) 403, 710
BsaJI CCNNGG 2 cut(s) 65, 684
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bse1I ACTGG 2 cut(s) 132, 740
Bse21I CCTNAGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 65, 684
BseMII CTCAG 2 cut(s) 219, 286
BseNI ACTGG 2 cut(s) 132, 740
BseRI GAGGAG 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 3 cut(s) 102, 496, 686
Bsh1285I CGRYCG 1 cut(s) 435
BshNI GGYRCC 1 cut(s) 628
BsiEI CGRYCG 1 cut(s) 435
BsiSI CCGG 2 cut(s) 311, 709
BslFI GGGAC 1 cut(s) 261
BsmAI GTCTC 4 cut(s) 22, 403, 655, 710
BsmFI GGGAC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 534
Bso31I GGTCTC 2 cut(s) 403, 710
Bsp1407I TGTACA 1 cut(s) 152
Bsp143I GATC 2 cut(s) 13, 565
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 5 cut(s) 169, 431, 684, 686, 712
BspCNI CTCAG 2 cut(s) 218, 285
BspFNI CGCG 3 cut(s) 102, 496, 686
BspLI GGNNCC 1 cut(s) 630
BspT107I GGYRCC 1 cut(s) 628
BspTNI GGTCTC 2 cut(s) 403, 710
BsrGI TGTACA 1 cut(s) 152
BsrI ACTGG 2 cut(s) 132, 740
BssECI CCNNGG 2 cut(s) 65, 684
BssMI GATC 2 cut(s) 13, 565
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 271, 357
BstACI GRCGYC 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 205, 272, 546
BstDSI CCRYGG 1 cut(s) 684
BstEII GGTNACC 1 cut(s) 679
BstFNI CGCG 3 cut(s) 102, 496, 686
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 2 cut(s) 16, 568
BstMAI GTCTC 4 cut(s) 22, 403, 655, 710
BstMBI GATC 2 cut(s) 13, 565
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 240
BstPI GGTNACC 1 cut(s) 679
BstSCI CCNGG 1 cut(s) 64
BstUI CGCG 3 cut(s) 102, 496, 686
BstV2I GAAGAC 3 cut(s) 250, 339, 433
Bsu36I CCTNAGG 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 684
BtgZI GCGATG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 82, 125
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 498
Cfr42I CCGCGG 1 cut(s) 687
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 153
CviAII CATG 3 cut(s) 237, 320, 531
CviJI RGCY 7 cut(s) 203, 217, 425, 578, 584, 603, 692
CviKI_1 RGCY 7 cut(s) 203, 217, 425, 578, 584, 603, 692
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 3 cut(s) 205, 272, 546
DpnI GATC 2 cut(s) 15, 567
DpnII GATC 2 cut(s) 13, 565
DraI TTTAAA 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 271, 357
EarI CTCTTC 2 cut(s) 271, 357
Eco31I GGTCTC 2 cut(s) 403, 710
Eco32I GATATC 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 205
Eco91I GGTNACC 1 cut(s) 679
EcoO65I GGTNACC 1 cut(s) 679
EcoRII CCWGG 1 cut(s) 64
EcoRV GATATC 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 536
FaeI CATG 3 cut(s) 240, 323, 534
FaiI YATR 5 cut(s) 238, 321, 463, 532, 611
FaqI GGGAC 1 cut(s) 261
FatI CATG 3 cut(s) 236, 319, 530
FauI CCCGC 2 cut(s) 176, 705
FbaI TGATCA 1 cut(s) 565
FspBI CTAG 4 cut(s) 11, 378, 600, 750
GlaI GCGC 1 cut(s) 497
GsuI CTGGAG 2 cut(s) 564, 757
HapII CCGG 2 cut(s) 311, 709
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 498
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 240, 323, 534
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HincII GTYRAC 1 cut(s) 242
HindII GTYRAC 1 cut(s) 242
HinfI GANTC 3 cut(s) 30, 393, 720
HpaII CCGG 2 cut(s) 311, 709
HphI GGTGA 4 cut(s) 137, 325, 575, 691
Hpy166II GTNNAC 2 cut(s) 242, 316
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 8 cut(s) 11, 25, 92, 101, 325, 390, 569, 724
Hpy8I GTNNAC 2 cut(s) 242, 316
Hpy99I CGWCG 2 cut(s) 471, 496
HpyAV CCTTC 2 cut(s) 48, 313
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 3 cut(s) 161, 534, 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 3 cut(s) 205, 272, 546
HpySE526I ACGT 1 cut(s) 344
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 240, 323, 534
HspAI GCGC 1 cut(s) 496
Ksp22I TGATCA 1 cut(s) 565
KspI CCGCGG 1 cut(s) 687
Kzo9I GATC 2 cut(s) 13, 565
LmnI GCTCC 2 cut(s) 583, 738
LweI GCATC 2 cut(s) 97, 149
MaeI CTAG 4 cut(s) 11, 378, 600, 750
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 3 cut(s) 232, 641, 679
MalI GATC 2 cut(s) 15, 567
MboI GATC 2 cut(s) 13, 565
MboII GAAGA 6 cut(s) 250, 258, 339, 344, 433, 584
MluCI AATT 6 cut(s) 194, 285, 328, 370, 586, 742
MlyI GAGTC 1 cut(s) 24
Mph1103I ATGCAT 1 cut(s) 536
MroXI GAANNNNTTC 1 cut(s) 526
MseI TTAA 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 2 cut(s) 311, 709
MspR9I CCNGG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 534
MvaI CCWGG 1 cut(s) 66
MvnI CGCG 3 cut(s) 102, 496, 686
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 2 cut(s) 13, 565
NlaIII CATG 3 cut(s) 240, 323, 534
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 1 cut(s) 679
NruI TCGCGA 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 536
NspI RCATGY 1 cut(s) 240
PciI ACATGT 1 cut(s) 236
PctI GAATGC 1 cut(s) 534
PdmI GAANNNNTTC 1 cut(s) 526
PfeI GAWTC 2 cut(s) 393, 720
PflFI GACNNNGTC 1 cut(s) 33
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PscI ACATGT 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 64
PspEI GGTNACC 1 cut(s) 679
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 630
PsyI GACNNNGTC 1 cut(s) 33
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SacII CCGCGG 1 cut(s) 687
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 2 cut(s) 13, 565
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 66
SetI ASST 9 cut(s) 160, 347, 415, 459, 484, 506, 580, 664, 755
SfaNI GCATC 2 cut(s) 97, 149
Sfr303I CCGCGG 1 cut(s) 687
SgrBI CCGCGG 1 cut(s) 687
Sse9I AATT 6 cut(s) 194, 285, 328, 370, 586, 742
SsiI CCGC 5 cut(s) 169, 431, 684, 686, 712
SspMI CTAG 4 cut(s) 11, 378, 600, 750
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 347
TasI AATT 6 cut(s) 194, 285, 328, 370, 586, 742
TatI WGTACW 1 cut(s) 152
TfiI GAWTC 2 cut(s) 393, 720
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 2 cut(s) 82, 132
TseFI GTSAC 1 cut(s) 679
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 1 cut(s) 519
TspRI CASTG 2 cut(s) 82, 132
Tth111I GACNNNGTC 1 cut(s) 33
XapI RAATTY 2 cut(s) 285, 328
XbaI TCTAGA 1 cut(s) 10
XceI RCATGY 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 526
XspI CTAG 4 cut(s) 11, 378, 600, 750
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.