Rroxscaffold_3G00251030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002163
Physical Location & Seq
Reverse (-)
44890376 .. 44892959
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251030.1

Sequence Viewer

Length: 348 bp
ATGATGGTACAGGTCGTGGAAAGAGAAAAGAGGAAGAGAAAGAAGAGAAGAGATTTTGAGATCATCAAGGGTAAAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCGCCGAGACCCAAAATAATAGCCTCCGCGGTCCCCGTCGCTCTCCACCACCTCCTACACCGTCGCTCTCCACCTCCTACGCCCTCTTTGGAAAGAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGAATTTCTCGAAACTTGCTGGCATGGGAGGAGTTGATGATGCAATGGGTGACTTTGATGATAGCGATGATGGTAAGAAGACTATTAGCTTAATGATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.38

Weight (kDa)

9.85

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 138
AccIII TCCGGA 1 cut(s) 98
AciI CCGC 3 cut(s) 111, 136, 138
AcsI RAATTY 1 cut(s) 247
AfaI GTAC 1 cut(s) 9
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 98
ApoI RAATTY 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 236, 305
AvaII GGWCC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 329
BccI CCATC 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 294
BseAI TCCGGA 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 98
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 3 cut(s) 111, 136, 138
BspEI TCCGGA 1 cut(s) 98
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 3 cut(s) 29, 38, 43
BstC8I GCNNGC 2 cut(s) 214, 265
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 249
BstFNI CGCG 1 cut(s) 138
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 60
BstUI CGCG 1 cut(s) 138
BstV2I GAAGAC 1 cut(s) 329
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 324
BtsCI GGATG 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 214, 265
Cfr13I GGNCC 1 cut(s) 140
Cfr42I CCGCGG 1 cut(s) 139
Csp6I GTAC 1 cut(s) 8
CviAII CATG 2 cut(s) 217, 268
CviJI RGCY 2 cut(s) 132, 333
CviKI_1 RGCY 2 cut(s) 132, 333
CviQI GTAC 1 cut(s) 8
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 3 cut(s) 29, 38, 43
EarI CTCTTC 3 cut(s) 29, 38, 43
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 140
FaeI CATG 2 cut(s) 220, 271
FaiI YATR 2 cut(s) 218, 269
FaqI GGGAC 1 cut(s) 126
FatI CATG 2 cut(s) 216, 267
FauI CCCGC 1 cut(s) 118
FokI GGATG 1 cut(s) 256
HapII CCGG 1 cut(s) 99
Hin1II CATG 2 cut(s) 220, 271
HinfI GANTC 1 cut(s) 102
HpaII CCGG 1 cut(s) 99
HphI GGTGA 2 cut(s) 236, 305
Hpy188III TCNNGA 2 cut(s) 99, 253
Hpy99I CGWCG 2 cut(s) 150, 175
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 80, 287
Hsp92II CATG 2 cut(s) 220, 271
Kpn2I TCCGGA 1 cut(s) 98
KspI CCGCGG 1 cut(s) 139
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 4 cut(s) 100, 112, 198, 249
LweI GCATC 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 293
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 4 cut(s) 46, 55, 60, 334
MluCI AATT 2 cut(s) 75, 247
MnlI CCTC 7 cut(s) 24, 143, 171, 193, 203, 215, 266
MroI TCCGGA 1 cut(s) 98
MseI TTAA 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 138
NdeII GATC 1 cut(s) 60
NlaIII CATG 2 cut(s) 220, 271
NlaIV GGNNCC 1 cut(s) 142
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 140
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SacII CCGCGG 1 cut(s) 139
SaqAI TTAA 1 cut(s) 335
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 140
SetI ASST 6 cut(s) 15, 163, 185, 226, 232, 335
SfaNI GCATC 1 cut(s) 274
Sfr303I CCGCGG 1 cut(s) 139
SgrBI CCGCGG 1 cut(s) 139
SinI GGWCC 1 cut(s) 140
Sse9I AATT 2 cut(s) 75, 247
SsiI CCGC 3 cut(s) 111, 136, 138
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 254
TasI AATT 2 cut(s) 75, 247
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.