Rh3CG322700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002163
Physical Location & Seq
Reverse (-)
34800504 .. 34801882
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG322700.1

Sequence Viewer

Length: 603 bp
ATGAACCATGTCAAGAATTTGACAACCCATGTCAAGAATTTTATATTAAACACGTCTTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCGCCAGAGACCCAAAATAATATCCTTCGTGGTCGCCGCCGCTCTCCAGCTCCGACGCCGTCGCTCTCCACCACCTCCTACGCCCTCTTTGGAAAGAAACTCGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTTTCAAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTCTCGGTTAGTATATATTGACTTGTTGTATTTTCCACTATTAGAATTGGTGTTCAATTACTTTGCCAGTTCAATTGTTCTAACTCAGTTACCCTGTAGAAACTTGCTGGCATGGGAGGAGGTGATGATGCAATGGGTGACTTTGATGATAGCGATGATGAGTTCATGCATTCTTGGTTCTAAGATACAGCAAAAGGGTGATCAAGAAGAAGCTCCAGCCAATATGCAGTCTCCTAGCCTAAATATGACAGATGTTGTCGGGGTGTCTGTGAAATGTAACTTTGTCTCAACAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.99

Weight (kDa)

9.51

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 102
AciI CCGC 3 cut(s) 115, 150, 153
AcsI RAATTY 2 cut(s) 16, 37
AcyI GRCGYC 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 3 cut(s) 260, 361, 378
AjiI CACGTC 1 cut(s) 54
AluBI AGCT 2 cut(s) 163, 518
AluI AGCT 2 cut(s) 163, 518
Alw26I GTCTC 3 cut(s) 115, 540, 595
Aor13HI TCCGGA 1 cut(s) 102
ApoI RAATTY 2 cut(s) 16, 37
AsuHPI GGTGA 5 cut(s) 241, 292, 439, 454, 515
BbsI GAAGAC 1 cut(s) 48
BccI CCATC 2 cut(s) 243, 294
BceAI ACGGC 1 cut(s) 156
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 3 cut(s) 115, 540, 595
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 400
BisI GCNGC 2 cut(s) 150, 153
BlsI GCNGC 2 cut(s) 151, 154
BmgBI CACGTC 1 cut(s) 54
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 423
BmuI ACTGGG 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 48
BpmI CTGGAG 2 cut(s) 143, 504
BsaHI GRCGYC 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 91, 372
Bse3DI GCAATG 1 cut(s) 443
BseAI TCCGGA 1 cut(s) 102
BseGI GGATG 2 cut(s) 254, 305
BseMI GCAATG 1 cut(s) 443
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 2 cut(s) 91, 372
BseRI GAGGAG 1 cut(s) 437
BsiSI CCGG 1 cut(s) 103
BsmAI GTCTC 3 cut(s) 115, 540, 595
BsmI GAATGC 1 cut(s) 474
Bso31I GGTCTC 1 cut(s) 115
Bsp13I TCCGGA 1 cut(s) 102
Bsp143I GATC 1 cut(s) 505
BspACI CCGC 3 cut(s) 115, 150, 153
BspCNI CTCAG 1 cut(s) 403
BspEI TCCGGA 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 443
BsrI ACTGG 2 cut(s) 91, 372
BssMI GATC 1 cut(s) 505
BssNI GRCGYC 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 169
BstC8I GCNNGC 3 cut(s) 219, 270, 414
BstDEI CTNAG 2 cut(s) 390, 486
BstF5I GGATG 2 cut(s) 254, 305
BstKTI GATC 1 cut(s) 508
BstMAI GTCTC 3 cut(s) 115, 540, 595
BstMBI GATC 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 400
BstV2I GAAGAC 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 473
BtrI CACGTC 1 cut(s) 54
BtsCI GGATG 2 cut(s) 254, 305
Cac8I GCNNGC 3 cut(s) 219, 270, 414
CseI GACGC 1 cut(s) 177
CviAII CATG 6 cut(s) 8, 29, 222, 273, 417, 471
CviJI RGCY 4 cut(s) 163, 518, 524, 543
CviKI_1 RGCY 4 cut(s) 163, 518, 524, 543
DdeI CTNAG 2 cut(s) 390, 486
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 476
FaeI CATG 6 cut(s) 11, 32, 225, 276, 420, 474
FatI CATG 6 cut(s) 7, 28, 221, 272, 416, 470
FauI CCCGC 1 cut(s) 122
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 2 cut(s) 150, 153
FokI GGATG 2 cut(s) 261, 312
Fsp4HI GCNGC 2 cut(s) 150, 153
FspBI CTAG 1 cut(s) 540
GluI GCNGC 2 cut(s) 150, 153
GsuI CTGGAG 2 cut(s) 143, 504
HapII CCGG 1 cut(s) 103
HgaI GACGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 6 cut(s) 11, 32, 225, 276, 420, 474
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 103
HphI GGTGA 5 cut(s) 241, 292, 439, 454, 515
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 4 cut(s) 13, 34, 103, 509
Hpy99I CGWCG 2 cut(s) 171, 177
HpyAV CCTTC 3 cut(s) 148, 226, 277
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 84, 436, 474, 532
HpyF3I CTNAG 2 cut(s) 390, 486
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 6 cut(s) 11, 32, 225, 276, 420, 474
Kpn2I TCCGGA 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 1 cut(s) 505
LmnI GCTCC 2 cut(s) 168, 523
LweI GCATC 1 cut(s) 423
MaeI CTAG 1 cut(s) 540
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 3 cut(s) 393, 442, 581
MalI GATC 1 cut(s) 507
MbiI CCGCTC 1 cut(s) 155
MboI GATC 1 cut(s) 505
MboII GAAGA 4 cut(s) 48, 53, 88, 524
MfeI CAATTG 1 cut(s) 378
MluCI AATT 6 cut(s) 16, 37, 79, 350, 361, 378
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 6 cut(s) 198, 208, 220, 271, 415, 418
Mph1103I ATGCAT 1 cut(s) 476
MroI TCCGGA 1 cut(s) 102
MseI TTAA 1 cut(s) 47
MspI CCGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 474
NdeII GATC 1 cut(s) 505
NlaIII CATG 6 cut(s) 11, 32, 225, 276, 420, 474
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 476
PctI GAATGC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 106
PflFI GACNNNGTC 1 cut(s) 171
PkrI GCNGC 2 cut(s) 151, 154
PsyI GACNNNGTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 150, 153
Sau3AI GATC 1 cut(s) 505
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 1 cut(s) 400
Sse9I AATT 6 cut(s) 16, 37, 79, 350, 361, 378
SsiI CCGC 3 cut(s) 115, 150, 153
SspMI CTAG 1 cut(s) 540
TaiI ACGT 1 cut(s) 56
TasI AATT 6 cut(s) 16, 37, 79, 350, 361, 378
TauI GCSGC 2 cut(s) 152, 155
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseFI GTSAC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 17, 459
Tth111I GACNNNGTC 1 cut(s) 171
XapI RAATTY 2 cut(s) 16, 37
XspI CTAG 1 cut(s) 540
Zsp2I ATGCAT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.