Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002163

Physical Location & Seq

Genomic Coordinates Forward (+)

14827060 .. 14827577

Gene Structure 518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTGTGAGAATTGTGGGATTGTTGGACACACAATGGATCGATGTAAACACCTTATTAAAGAGCAGGCTAATGCTTCTACTTATTCCAAGGGGGTTGTTGGTAGTGAACGCCCAAAACCCAAGGTTCGGCAAGAGTACAGAGTCAAGGCCAAACATCAAGTTCAGCTGCGTTCTCCTGATGTTGCAGAACAACCTTTTATTGATGATCATTCTAAGAAGGATGCCGAAATTGCAAAGTTTGCTGACAATGTTATTCAAGAAGCTGTGAACCAGGAACTTAACCGTATTGCTGATGTGGTTGTCAATGAACTTCCACAAAGAGCATACTTTGCAATTTTTGAACTGGGAACCGGTTGGAACCGGCCCGGACAGCCCATAAATCGCCGGTTTGGCTCGGAACCGAAATATAGACCCAGGCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.1

Weight (kDa)

9.22

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002163)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0297061 RchiOBHm_Chr7g0200861 RchiOBHm_Chr7g0230581
rosa_laevigata	RLG00000007368 RLG00000011884 RLG00000013442 RLG00000017274 RLG00000017275 RLG00000017988 RLG00000034354
rosa_multiflora	Rmu_sc0001750.1_g000005 Rmu_sc0004217.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047140 Rroxscaffold_2G00119870 Rroxscaffold_3G00251030 Rroxscaffold_4G00327060 Rroxscaffold_7G00214510
rosa_rugosa	Rorug02G0595700 Rorug02G0595700 Rorug03G0060600 Rorug03G0060700.1 Rorug03G0060800.1 Rorug05G0392400
rosa_samantha	Rh1AG166100 Rh1AG166200 Rh1AG166300 Rh1BG311800 Rh1CG154700 Rh1DG058100 Rh1DG343500 Rh2AG239200 Rh2AG239300 Rh2AG319700 Rh2CG016900 Rh3CG322700 Rh3DG271400 Rh4DG201000 Rh5DG159900 Rh6CG122200 Rh6CG122300 Rh6CG508600 Rh6DG109500 Rh7CG486800 Rh7DG455200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	257, 341
AjnI	CCWGG	2 cut(s)	270, 413
AluBI	AGCT	2 cut(s)	166, 263
AluI	AGCT	2 cut(s)	166, 263
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	3 cut(s)	147, 362, 416
ApeKI	GCWGC	1 cut(s)	166
AsiGI	ACCGGT	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	363
AsuC2I	CCSGG	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	153
BciT130I	CCWGG	2 cut(s)	272, 415
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	366
BglI	GCCNNNNNGGC	1 cut(s)	390
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	3 cut(s)	272, 366, 415
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	3 cut(s)	349, 359, 399
BmrFI	CCNGG	3 cut(s)	272, 366, 415
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	40
BsaJI	CCNNGG	3 cut(s)	87, 120, 413
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	3 cut(s)	350, 360, 384
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	272, 415
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	3 cut(s)	87, 120, 413
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	153
BshFI	GGCC	3 cut(s)	149, 364, 418
BshTI	ACCGGT	1 cut(s)	350
BshVI	ATCGAT	1 cut(s)	40
BsiSI	CCGG	4 cut(s)	351, 361, 366, 385
BslI	CCNNNNNNNGG	1 cut(s)	126
BsnI	GGCC	3 cut(s)	149, 364, 418
Bsp143I	GATC	2 cut(s)	37, 205
BspANI	GGCC	3 cut(s)	149, 364, 418
BspDI	ATCGAT	1 cut(s)	40
BspLI	GGNNCC	3 cut(s)	349, 359, 399
BspPI	GGATC	1 cut(s)	45
BsrFI	RCCGGY	3 cut(s)	350, 360, 384
BsrI	ACTGG	1 cut(s)	348
BssAI	RCCGGY	3 cut(s)	350, 360, 384
BssECI	CCNNGG	3 cut(s)	87, 120, 413
BssMI	GATC	2 cut(s)	37, 205
BssT1I	CCWWGG	2 cut(s)	87, 120
Bst2UI	CCWGG	2 cut(s)	272, 415
Bst4CI	ACNGT	1 cut(s)	284
BstAPI	GCANNNNNTGC	2 cut(s)	239, 329
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	40, 208
BstMBI	GATC	2 cut(s)	37, 205
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 239, 329, 370, 390
BstNI	CCWGG	2 cut(s)	272, 415
BstSCI	CCNGG	3 cut(s)	270, 364, 413
BstV1I	GCAGC	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	149, 364, 418
BsuTUI	ATCGAT	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	66
Cfr10I	RCCGGY	3 cut(s)	350, 360, 384
Cfr13I	GGNCC	1 cut(s)	363
ClaI	ATCGAT	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	136
CspAI	ACCGGT	1 cut(s)	350
CviJI	RGCY	8 cut(s)	68, 149, 166, 263, 364, 373, 393, 418
CviKI_1	RGCY	8 cut(s)	68, 149, 166, 263, 364, 373, 393, 418
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	39, 207
DpnII	GATC	2 cut(s)	37, 205
Eco130I	CCWWGG	2 cut(s)	87, 120
Eco147I	AGGCCT	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	270, 413
EcoT14I	CCWWGG	2 cut(s)	87, 120
ErhI	CCWWGG	2 cut(s)	87, 120
FaiI	YATR	5 cut(s)	325, 377, 408, 422, 424
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	167
HaeIII	GGCC	3 cut(s)	149, 364, 418
HapII	CCGG	4 cut(s)	351, 361, 366, 385
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	4 cut(s)	351, 361, 366, 385
Hpy166II	GTNNAC	3 cut(s)	47, 107, 268
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	2 cut(s)	176, 257
Hpy8I	GTNNAC	3 cut(s)	47, 107, 268
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	185, 233, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 239, 329, 370, 390
HpyF3I	CTNAG	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	37, 205
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	211
MalI	GATC	2 cut(s)	39, 207
MboI	GATC	2 cut(s)	37, 205
MluCI	AATT	3 cut(s)	10, 228, 333
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	2 cut(s)	4, 335
MseI	TTAA	2 cut(s)	57, 279
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	4 cut(s)	351, 361, 366, 385
MspR9I	CCNGG	3 cut(s)	272, 366, 415
MvaI	CCWGG	2 cut(s)	272, 415
MwoI	GCNNNNNNNGC	5 cut(s)	230, 239, 329, 370, 390
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	2 cut(s)	37, 205
NlaIV	GGNNCC	3 cut(s)	349, 359, 399
PceI	AGGCCT	1 cut(s)	418
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	270, 413
PspGI	CCWGG	2 cut(s)	270, 413
PspN4I	GGNNCC	3 cut(s)	349, 359, 399
PspPI	GGNCC	1 cut(s)	363
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	57, 279
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	37, 205
Sau96I	GGNCC	1 cut(s)	363
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	3 cut(s)	272, 366, 415
SetI	ASST	5 cut(s)	54, 126, 168, 196, 265
SfaNI	GCATC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	10, 228, 333
SseBI	AGGCCT	1 cut(s)	418
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	3 cut(s)	270, 364, 413
StyI	CCWWGG	2 cut(s)	87, 120
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	40
TasI	AATT	3 cut(s)	10, 228, 333
TatI	WGTACW	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	57, 279
Tru9I	TTAA	2 cut(s)	57, 279
TseI	GCWGC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.