Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002163

Physical Location & Seq

Genomic Coordinates Forward (+)

52006776 .. 52013972

Gene Structure 7197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAAGCAGGCAAATGTGAACATTTTCAATCACTTCCACACCAGTTCCCCCGTCTTCTCCTCTTCTCACAGTTCCAAAAAAAATTTCAGAACCCAAATCCTTCCCTCCTACGAACCATGTCAAGAATTTGATATCAAACACGTCTTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCGCCAGAGACCCAAAATAATAGCCTCCGCGGTCCCCGTCGCTCTCCACCACCTCCTACACCGTCGCTCTCCACCTCCTACGCCCTCTTTGGAAAGAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGAATTTCTCGAAACTTGCTGGCATGGGAGGAGTTGATGATGCAATGGGTGACTTTGATGATAGCGATGATGAGATAAGAAAGAGACAGAGAATATACCTATCCGGAGAGGGTGTAGGTGGTGGAGAGCGACGGCGTCGGAGGCTGGAGAGCGACGAGCGTCGGAGGCTGGAGAGCGGCGGAGGCTATTATTTTGGGTCTCTGGCGGGAACGAATCCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.53

Weight (kDa)

6.98

Isoelectric Point (pI)

72.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002163)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0297061 RchiOBHm_Chr7g0200861 RchiOBHm_Chr7g0230581
rosa_laevigata	RLG00000007368 RLG00000011884 RLG00000013442 RLG00000017274 RLG00000017275 RLG00000017988 RLG00000034354
rosa_multiflora	Rmu_sc0001750.1_g000005 Rmu_sc0004217.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047140 Rroxscaffold_2G00119870 Rroxscaffold_3G00251030 Rroxscaffold_4G00327060 Rroxscaffold_7G00214510
rosa_rugosa	Rorug02G0595700 Rorug02G0595700 Rorug03G0060600 Rorug03G0060700.1 Rorug03G0060800.1 Rorug05G0392400
rosa_samantha	Rh1AG166100 Rh1AG166200 Rh1AG166300 Rh1BG311800 Rh1CG154700 Rh1DG058100 Rh1DG343500 Rh2AG239200 Rh2AG239300 Rh2AG319700 Rh2CG016900 Rh3CG322700 Rh3DG271400 Rh4DG201000 Rh5DG159900 Rh6CG122200 Rh6CG122300 Rh6CG508600 Rh6DG109500 Rh7CG486800 Rh7DG455200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	513
AccII	CGCG	1 cut(s)	231
AccIII	TCCGGA	3 cut(s)	190, 440, 553
AciI	CCGC	6 cut(s)	203, 229, 231, 513, 516, 542
AcsI	RAATTY	3 cut(s)	82, 125, 340
AcyI	GRCGYC	1 cut(s)	472
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	28
AjiI	CACGTC	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
Alw26I	GTCTC	3 cut(s)	203, 415, 540
Aor13HI	TCCGGA	3 cut(s)	190, 440, 553
ApoI	RAATTY	3 cut(s)	82, 125, 340
Asp700I	GAANNNNTTC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	329, 398
AvaII	GGWCC	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	46, 136
BceAI	ACGGC	1 cut(s)	485
BcoDI	GTCTC	3 cut(s)	203, 415, 540
BisI	GCNGC	1 cut(s)	514
BlsI	GCNGC	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	173
BoxI	GACNNNNGTC	1 cut(s)	495
BpiI	GAAGAC	2 cut(s)	46, 136
BpmI	CTGGAG	2 cut(s)	503, 527
BsaHI	GRCGYC	1 cut(s)	472
BsaI	GGTCTC	2 cut(s)	203, 540
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	3 cut(s)	190, 440, 553
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bse1I	ACTGG	2 cut(s)	42, 179
Bse3DI	GCAATG	1 cut(s)	387
BseAI	TCCGGA	3 cut(s)	190, 440, 553
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	42, 179
BseRI	GAGGAG	2 cut(s)	49, 381
Bsh1236I	CGCG	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	191, 441, 554
BslFI	GGGAC	1 cut(s)	219
BsmAI	GTCTC	3 cut(s)	203, 415, 540
BsmFI	GGGAC	1 cut(s)	219
Bso31I	GGTCTC	2 cut(s)	203, 540
Bsp13I	TCCGGA	3 cut(s)	190, 440, 553
BspACI	CCGC	6 cut(s)	203, 229, 231, 513, 516, 542
BspEI	TCCGGA	3 cut(s)	190, 440, 553
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	235
BspTNI	GGTCTC	2 cut(s)	203, 540
BsrBI	CCGCTC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	42, 179
BssECI	CCNNGG	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	472
Bst4CI	ACNGT	2 cut(s)	71, 264
Bst6I	CTCTTC	2 cut(s)	67, 154
BstACI	GRCGYC	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	9, 307, 358
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	231
BstMAI	GTCTC	3 cut(s)	203, 415, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	478, 502, 519
BstPAI	GACNNNNGTC	1 cut(s)	495
BstUI	CGCG	1 cut(s)	231
BstV2I	GAAGAC	2 cut(s)	46, 136
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	417
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	342
Cac8I	GCNNGC	3 cut(s)	9, 307, 358
Cfr13I	GGNCC	1 cut(s)	233
Cfr42I	CCGCGG	1 cut(s)	232
CseI	GACGC	2 cut(s)	461, 485
CviAII	CATG	3 cut(s)	117, 310, 361
CviJI	RGCY	4 cut(s)	225, 481, 505, 522
CviKI_1	RGCY	4 cut(s)	225, 481, 505, 522
Eam1104I	CTCTTC	2 cut(s)	67, 154
EarI	CTCTTC	2 cut(s)	67, 154
EciI	GGCGGA	1 cut(s)	531
Eco31I	GGTCTC	2 cut(s)	203, 540
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	233
EcoRV	GATATC	1 cut(s)	133
FaeI	CATG	3 cut(s)	120, 313, 364
FaiI	YATR	4 cut(s)	118, 311, 362, 433
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	3 cut(s)	116, 309, 360
FauI	CCCGC	2 cut(s)	210, 535
Fnu4HI	GCNGC	1 cut(s)	514
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	514
GluI	GCNGC	1 cut(s)	514
GsuI	CTGGAG	2 cut(s)	503, 527
HapII	CCGG	3 cut(s)	191, 441, 554
HgaI	GACGC	2 cut(s)	461, 485
Hin1I	GRCGYC	1 cut(s)	472
Hin1II	CATG	3 cut(s)	120, 313, 364
HinfI	GANTC	2 cut(s)	194, 550
HpaII	CCGG	3 cut(s)	191, 441, 554
HphI	GGTGA	2 cut(s)	329, 398
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	89, 477, 501
Hpy188III	TCNNGA	5 cut(s)	122, 191, 346, 441, 554
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	6 cut(s)	243, 268, 471, 477, 494, 501
HpyAV	CCTTC	2 cut(s)	110, 314
HpyCH4III	ACNGT	2 cut(s)	71, 264
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	172, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	478, 502, 519
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	472
Hsp92II	CATG	3 cut(s)	120, 313, 364
Kpn2I	TCCGGA	3 cut(s)	190, 440, 553
KspI	CCGCGG	1 cut(s)	232
LweI	GCATC	1 cut(s)	367
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	386
MbiI	CCGCTC	1 cut(s)	513
MboII	GAAGA	5 cut(s)	46, 54, 136, 141, 176
MluCI	AATT	4 cut(s)	82, 125, 167, 340
MmeI	TCCRAC	2 cut(s)	455, 479
MroI	TCCGGA	3 cut(s)	190, 440, 553
MroXI	GAANNNNTTC	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	3 cut(s)	191, 441, 554
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	478, 502, 519
NlaIII	CATG	3 cut(s)	120, 313, 364
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	194, 550
PflFI	GACNNNGTC	1 cut(s)	471
PkrI	GCNGC	1 cut(s)	515
PshAI	GACNNNNGTC	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	233
PsyI	GACNNNGTC	1 cut(s)	471
SacII	CCGCGG	1 cut(s)	232
SatI	GCNGC	1 cut(s)	514
Sau96I	GGNCC	1 cut(s)	233
SetI	ASST	7 cut(s)	144, 256, 278, 319, 325, 438, 457
SfaNI	GCATC	1 cut(s)	367
Sfr303I	CCGCGG	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	233
Sse9I	AATT	4 cut(s)	82, 125, 167, 340
SsiI	CCGC	6 cut(s)	203, 229, 231, 513, 516, 542
TaaI	ACNGT	2 cut(s)	71, 264
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	347
TasI	AATT	4 cut(s)	82, 125, 167, 340
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	194, 550
TseFI	GTSAC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	2 cut(s)	17, 353
Tth111I	GACNNNGTC	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	3 cut(s)	82, 125, 340
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.