Rh3DG271400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002163
Physical Location & Seq
Reverse (-)
27191490 .. 27194994
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG271400.1

Sequence Viewer

Length: 351 bp
ATGGAGCAGGGGTCTCATTCATCATCATCTTCTTCAGATGATGAACGTACTATATCTGACACATTGGGTTCTCATGTCAGCAATACCATTATTAATCAATCAACTTCATTGGTGCGCAGGCCTTGGCACTGTCTCGTTGAGGAGGAACAAGAGGGTGATTTGAGTGATTCAAGTGCTACTCAGCTACAGGGGCCTCTTATTCGTTCGTCAAATCATGTTAATGCTGTTTTAGAGCAAGGGAATGTTAGTGAAGCTTCCTTTAATCTAGCTCTTGAAGCCCAGGAGGTGACTTCGCTGCTCCTGTTGATGAAGGCTAACAACGATTTGGAACTGGGTTTAGGAACTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.52

Weight (kDa)

4.47

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 1 cut(s) 49
AgsI TTSAA 2 cut(s) 171, 275
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 3 cut(s) 184, 254, 269
AluI AGCT 3 cut(s) 184, 254, 269
Alw26I GTCTC 2 cut(s) 18, 137
AoxI GGCC 2 cut(s) 119, 191
ApeKI GCWGC 1 cut(s) 295
AseI ATTAAT 1 cut(s) 93
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 167, 298
BbvI GCAGC 1 cut(s) 282
BciT130I CCWGG 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 18, 137
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 281
BmrI ACTGGG 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 122, 279
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 122, 279
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 2 cut(s) 121, 193
BsmAI GTCTC 2 cut(s) 18, 137
BsnI GGCC 2 cut(s) 121, 193
Bso31I GGTCTC 1 cut(s) 18
BspANI GGCC 2 cut(s) 121, 193
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 122, 279
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 117
BstMAI GTCTC 2 cut(s) 18, 137
BstMWI GCNNNNNNNGC 2 cut(s) 190, 275
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 282
BsuRI GGCC 2 cut(s) 121, 193
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 48
CviAII CATG 2 cut(s) 74, 215
CviJI RGCY 7 cut(s) 121, 184, 193, 254, 269, 278, 314
CviKI_1 RGCY 7 cut(s) 121, 184, 193, 254, 269, 278, 314
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 2 cut(s) 77, 218
FaiI YATR 3 cut(s) 53, 75, 216
FatI CATG 2 cut(s) 73, 214
Fnu4HI GCNGC 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 266
FspI TGCGCA 1 cut(s) 116
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 296
HaeIII GGCC 2 cut(s) 121, 193
HhaI GCGC 1 cut(s) 117
Hin1II CATG 2 cut(s) 77, 218
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 1 cut(s) 167
HphI GGTGA 2 cut(s) 167, 298
Hpy188I TCNGA 2 cut(s) 37, 58
Hpy188III TCNNGA 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 275
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 2 cut(s) 77, 218
HspAI GCGC 1 cut(s) 115
LmnI GCTCC 2 cut(s) 4, 303
LpnPI CCDG 6 cut(s) 103, 173, 266, 293, 314, 317
Lsp1109I GCAGC 1 cut(s) 282
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 286
MboII GAAGA 2 cut(s) 21, 24
MnlI CCTC 5 cut(s) 133, 136, 145, 204, 277
MseI TTAA 3 cut(s) 93, 219, 261
MslI CAYNNNNRTG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 190, 275
NlaIII CATG 2 cut(s) 77, 218
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 286
NsbI TGCGCA 1 cut(s) 116
PceI AGGCCT 1 cut(s) 121
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 297
PshBI ATTAAT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 191
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 3 cut(s) 93, 219, 261
SatI GCNGC 1 cut(s) 296
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 281
SetI ASST 5 cut(s) 49, 186, 256, 271, 288
SfcI CTRYAG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 219
SseBI AGGCCT 1 cut(s) 121
SspMI CTAG 1 cut(s) 266
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 49
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 3 cut(s) 93, 219, 261
Tru9I TTAA 3 cut(s) 93, 219, 261
TscAI CASTG 1 cut(s) 134
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 4 cut(s) 9, 57, 96, 323
TspRI CASTG 1 cut(s) 134
VspI ATTAAT 1 cut(s) 93
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.