Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002163

Physical Location & Seq

Genomic Coordinates Forward (+)

65164064 .. 65164938

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCACCTCAAGTATCAACAATTATACACAATGGTATCCAATGACCCGAGAAAATTGAACATCAAAGTCGAGGATTGGGTCCACTGCGTCCAACCAAAGCAAAGTCGGGATTGGATCCACTGCGTCCAACCAGCCACACCGGCGCTCGGACCACCGGACCGGTCCCTGTTGTCCCGGACCGCCGGCTCCTTTTGTTCGGACCGGCTTCGTCTCCCTTCCGGATCGGAATCCTTCCTCGTCCGGATCGGCTTCGTCCCTCGCCCGGACCGCCGCCGTCTTCGGTCATTCGGACCCGGTCCCGGCGTCGTTGTGATTACCGGATCGTCGTCGTCGGGCTTCCTCGGTTCGGGCGGCGTCGTTCCTTCGGTTCGGCTGCCGCTCATCTTCTCCGGATACCAAGACCCGCCACGGCCAACCAAAACACCCGAAACCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.01

Weight (kDa)

10.02

Isoelectric Point (pI)

64.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002163)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0297061 RchiOBHm_Chr7g0200861 RchiOBHm_Chr7g0230581
rosa_laevigata	RLG00000007368 RLG00000011884 RLG00000013442 RLG00000017274 RLG00000017275 RLG00000017988 RLG00000034354
rosa_multiflora	Rmu_sc0001750.1_g000005 Rmu_sc0004217.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047140 Rroxscaffold_2G00119870 Rroxscaffold_3G00251030 Rroxscaffold_4G00327060 Rroxscaffold_7G00214510
rosa_rugosa	Rorug02G0595700 Rorug02G0595700 Rorug03G0060600 Rorug03G0060700.1 Rorug03G0060800.1 Rorug05G0392400
rosa_samantha	Rh1AG166100 Rh1AG166200 Rh1AG166300 Rh1BG311800 Rh1CG154700 Rh1DG058100 Rh1DG343500 Rh2AG239200 Rh2AG239300 Rh2AG319700 Rh2CG016900 Rh3CG322700 Rh3DG271400 Rh4DG201000 Rh5DG159900 Rh6CG122200 Rh6CG122300 Rh6CG508600 Rh6DG109500 Rh7CG486800 Rh7DG455200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	379
AccIII	TCCGGA	3 cut(s)	218, 240, 389
AciI	CCGC	6 cut(s)	180, 268, 271, 351, 377, 404
AclWI	GGATC	5 cut(s)	109, 122, 229, 251, 328
AcoI	YGGCCR	1 cut(s)	410
AcyI	GRCGYC	2 cut(s)	303, 354
AfiI	CCNNNNNNNGG	4 cut(s)	146, 262, 299, 346
AgeI	ACCGGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	5 cut(s)	109, 122, 229, 251, 328
Ama87I	CYCGRG	1 cut(s)	46
Aor13HI	TCCGGA	3 cut(s)	218, 240, 389
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	373
AsiGI	ACCGGT	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	9 cut(s)	79, 149, 157, 162, 177, 199, 265, 290, 296
AsuC2I	CCSGG	4 cut(s)	175, 263, 294, 300
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	9 cut(s)	79, 149, 157, 162, 177, 199, 265, 290, 296
BaeI	ACNNNNGTAYC	2 cut(s)	18, 51
BamHI	GGATCC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	360
BceAI	ACGGC	2 cut(s)	258, 425
BciVI	GTATCC	2 cut(s)	46, 386
BcnI	CCSGG	4 cut(s)	175, 263, 294, 300
BcoDI	GTCTC	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	146
BfuI	GTATCC	2 cut(s)	46, 386
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	4 cut(s)	271, 352, 374, 377
BlsI	GCNGC	4 cut(s)	272, 353, 375, 378
Bme1390I	CCNGG	4 cut(s)	175, 263, 294, 300
Bme18I	GGWCC	9 cut(s)	79, 149, 157, 162, 177, 199, 265, 290, 296
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	9 cut(s)	79, 149, 157, 162, 177, 199, 265, 290, 296
BmiI	GGNNCC	6 cut(s)	80, 116, 164, 187, 292, 298
BmrFI	CCNGG	4 cut(s)	175, 263, 294, 300
BpiI	GAAGAC	1 cut(s)	269
BpuMI	CCSGG	4 cut(s)	175, 263, 294, 300
BsaBI	GATNNNNATC	1 cut(s)	226
BsaHI	GRCGYC	2 cut(s)	303, 354
BsaJI	CCNNGG	2 cut(s)	340, 407
BsaWI	WCCGGW	6 cut(s)	154, 159, 218, 240, 317, 389
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 262, 299, 346
Bse118I	RCCGGY	4 cut(s)	139, 159, 182, 201
Bse8I	GATNNNNATC	1 cut(s)	226
BseAI	TCCGGA	3 cut(s)	218, 240, 389
BseDI	CCNNGG	2 cut(s)	340, 407
BseJI	GATNNNNATC	1 cut(s)	226
BseLI	CCNNNNNNNGG	4 cut(s)	146, 262, 299, 346
BseXI	GCAGC	1 cut(s)	360
BshFI	GGCC	1 cut(s)	412
BshTI	ACCGGT	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	46
BslFI	GGGAC	4 cut(s)	148, 157, 239, 282
BslI	CCNNNNNNNGG	4 cut(s)	146, 262, 299, 346
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	4 cut(s)	148, 157, 239, 282
BsnI	GGCC	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	46
Bsp13I	TCCGGA	3 cut(s)	218, 240, 389
Bsp143I	GATC	4 cut(s)	114, 221, 243, 320
BspACI	CCGC	6 cut(s)	180, 268, 271, 351, 377, 404
BspANI	GGCC	1 cut(s)	412
BspEI	TCCGGA	3 cut(s)	218, 240, 389
BspLI	GGNNCC	6 cut(s)	80, 116, 164, 187, 292, 298
BspPI	GGATC	5 cut(s)	109, 122, 229, 251, 328
BsrBI	CCGCTC	1 cut(s)	379
BsrFI	RCCGGY	4 cut(s)	139, 159, 182, 201
BssAI	RCCGGY	4 cut(s)	139, 159, 182, 201
BssECI	CCNNGG	2 cut(s)	340, 407
BssMI	GATC	4 cut(s)	114, 221, 243, 320
BssNI	GRCGYC	2 cut(s)	303, 354
BstACI	GRCGYC	2 cut(s)	303, 354
BstC8I	GCNNGC	1 cut(s)	184
BstDSI	CCRYGG	1 cut(s)	407
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	4 cut(s)	117, 224, 246, 323
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	4 cut(s)	114, 221, 243, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 267
BstSCI	CCNGG	4 cut(s)	173, 261, 292, 298
BstV1I	GCAGC	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuI	GTATCC	2 cut(s)	46, 386
BsuRI	GGCC	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	407
BtsI	GCAGTG	2 cut(s)	82, 118
BtsIMutI	CAGTG	2 cut(s)	82, 118
Cac8I	GCNNGC	1 cut(s)	184
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	4 cut(s)	139, 159, 182, 201
Cfr13I	GGNCC	9 cut(s)	79, 149, 157, 162, 177, 199, 265, 290, 296
CpoI	CGGWCCG	4 cut(s)	157, 177, 199, 265
CseI	GACGC	4 cut(s)	76, 112, 292, 343
CspAI	ACCGGT	1 cut(s)	159
CspI	CGGWCCG	4 cut(s)	157, 177, 199, 265
CviJI	RGCY	7 cut(s)	134, 186, 205, 249, 336, 373, 412
CviKI_1	RGCY	7 cut(s)	134, 186, 205, 249, 336, 373, 412
DpnI	GATC	4 cut(s)	116, 223, 245, 322
DpnII	GATC	4 cut(s)	114, 221, 243, 320
EaeI	YGGCCR	1 cut(s)	410
Eco47I	GGWCC	9 cut(s)	79, 149, 157, 162, 177, 199, 265, 290, 296
Eco88I	CYCGRG	1 cut(s)	46
Esp3I	CGTCTC	1 cut(s)	215
FaiI	YATR	1 cut(s)	25
FaqI	GGGAC	4 cut(s)	148, 157, 239, 282
FauI	CCCGC	1 cut(s)	411
Fnu4HI	GCNGC	4 cut(s)	271, 352, 374, 377
Fsp4HI	GCNGC	4 cut(s)	271, 352, 374, 377
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	4 cut(s)	271, 352, 374, 377
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	412
HgaI	GACGC	4 cut(s)	76, 112, 292, 343
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	2 cut(s)	303, 354
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	4 cut(s)	149, 199, 226, 290
Hpy188III	TCNNGA	4 cut(s)	107, 219, 241, 390
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	5 cut(s)	308, 328, 331, 334, 359
HpyAV	CCTTC	3 cut(s)	225, 241, 372
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 267
Hsp92I	GRCGYC	2 cut(s)	303, 354
HspAI	GCGC	1 cut(s)	143
Kpn2I	TCCGGA	3 cut(s)	218, 240, 389
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	114, 221, 243, 320
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	1 cut(s)	360
MalI	GATC	4 cut(s)	116, 223, 245, 322
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	4 cut(s)	114, 221, 243, 320
MboII	GAAGA	2 cut(s)	269, 376
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	2 cut(s)	20, 53
MmeI	TCCRAC	2 cut(s)	115, 151
MnlI	CCTC	5 cut(s)	17, 64, 245, 267, 350
MroI	TCCGGA	3 cut(s)	218, 240, 389
MroNI	GCCGGC	1 cut(s)	182
MspR9I	CCNGG	4 cut(s)	175, 263, 294, 300
MwoI	GCNNNNNNNGC	2 cut(s)	140, 267
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	4 cut(s)	175, 263, 294, 300
NdeII	GATC	4 cut(s)	114, 221, 243, 320
NgoMIV	GCCGGC	1 cut(s)	182
NlaIV	GGNNCC	6 cut(s)	80, 116, 164, 187, 292, 298
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	227
PflFI	GACNNNGTC	1 cut(s)	294
PfoI	TCCNGGA	1 cut(s)	173
PinAI	ACCGGT	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	272, 353, 375, 378
PspN4I	GGNNCC	6 cut(s)	80, 116, 164, 187, 292, 298
PspPI	GGNCC	9 cut(s)	79, 149, 157, 162, 177, 199, 265, 290, 296
PsuI	RGATCY	1 cut(s)	114
PsyI	GACNNNGTC	1 cut(s)	294
Rsr2I	CGGWCCG	4 cut(s)	157, 177, 199, 265
RsrII	CGGWCCG	4 cut(s)	157, 177, 199, 265
SatI	GCNGC	4 cut(s)	271, 352, 374, 377
Sau3AI	GATC	4 cut(s)	114, 221, 243, 320
Sau96I	GGNCC	9 cut(s)	79, 149, 157, 162, 177, 199, 265, 290, 296
ScrFI	CCNGG	4 cut(s)	175, 263, 294, 300
SetI	ASST	1 cut(s)	9
SgrAI	CRCCGGYG	1 cut(s)	139
SinI	GGWCC	9 cut(s)	79, 149, 157, 162, 177, 199, 265, 290, 296
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	20, 53
SsiI	CCGC	6 cut(s)	180, 268, 271, 351, 377, 404
StyD4I	CCNGG	4 cut(s)	173, 261, 292, 298
TaqI	TCGA	1 cut(s)	69
TaqII	GACCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	20, 53
TauI	GCSGC	3 cut(s)	273, 354, 379
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	2 cut(s)	89, 125
TseI	GCWGC	1 cut(s)	373
TspRI	CASTG	2 cut(s)	89, 125
Tth111I	GACNNNGTC	1 cut(s)	294
VpaK11BI	GGWCC	9 cut(s)	79, 149, 157, 162, 177, 199, 265, 290, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.