RLG00000034354

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002163
Physical Location & Seq
Forward (+)
41268407 .. 41269819
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034354

Sequence Viewer

Length: 681 bp
ATGGCTGCTTCTACCTCTGCAGAGCCAAGGGCCATCTGTCCTTGGCCTTTTCTGAATCTGCCGTCGGCCACGGAGAAGCCTTTGCCACCTCTGGCTAAAGCTTCTACTTATTCCAAGGGGGTTGTTGGTAGTGAAAGCCCAAAGCCCAAGGTTCAGCAAGAGTACAGAGTCAAGGCCAAACATCAAGTTCAGCTGCGTTCTCCTGATATTGCAGAACAACCTATTATTGATGATCATTCTAAGAAGGATGCCGAAATTGCAAAGTTTGCTGACAATGTTATTCAAGAGGCTGTGAACCAGGAACTTAACCGTATTGCTGATGTGGTTGTCAATGAAACCATTGTCAACCATGTGGATATACCTGCAGAACCTGTGTTACAGCAACTTTCCTCCGGGAGAATGGAGCAGAGGTCTCATTCATCATCATCCTCTTCGGATGATGAACGTACTATATCTGACACATTGGGTTCTCATGTCAGCAATACCATTATCAATCAATCAACTTCATTGGTGGGCAGGCCTTGGCACTGTCTGGTTGAGGAGGAACAAGAGGGTGATTTGAGTGATTCAAGTGCTACTCAGATACAGGGGCCTCTTATTCGTTCGTCAAATCATTTTAATGCTGTTTTAGAGCAAGGGAATGTTAGTGAAGCTTCCTTTAATCTAGCTCTTGAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

24.58

Weight (kDa)

4.98

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 66
AfaI GTAC 2 cut(s) 164, 448
AgsI TTSAA 3 cut(s) 284, 570, 674
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 4 cut(s) 101, 193, 653, 668
AluI AGCT 4 cut(s) 101, 193, 653, 668
Alw26I GTCTC 1 cut(s) 417
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 6 cut(s) 30, 44, 66, 174, 518, 590
ApeKI GCWGC 2 cut(s) 5, 193
AspS9I GGNCC 2 cut(s) 30, 590
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 566
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 299
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 1 cut(s) 665
BfmI CTRYAG 2 cut(s) 18, 363
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 2 cut(s) 6, 194
BlsI GCNGC 2 cut(s) 7, 195
Bme1390I CCNGG 2 cut(s) 299, 394
BmgT120I GGNCC 2 cut(s) 30, 590
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 2 cut(s) 299, 394
BmsI GCATC 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 394
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 6 cut(s) 26, 41, 69, 114, 147, 521
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 6 cut(s) 26, 41, 69, 114, 147, 521
BseGI GGATG 3 cut(s) 253, 425, 442
BseMII CTCAG 1 cut(s) 593
BseRI GAGGAG 1 cut(s) 554
BseXI GCAGC 1 cut(s) 180
BshFI GGCC 6 cut(s) 32, 46, 68, 176, 520, 592
BsiSI CCGG 1 cut(s) 393
BsmAI GTCTC 1 cut(s) 417
BsnI GGCC 6 cut(s) 32, 46, 68, 176, 520, 592
Bso31I GGTCTC 1 cut(s) 417
Bsp143I GATC 1 cut(s) 232
BspANI GGCC 6 cut(s) 32, 46, 68, 176, 520, 592
BspCNI CTCAG 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 591
BspMAI CTGCAG 2 cut(s) 22, 367
BspMI ACCTGC 1 cut(s) 370
BspTNI GGTCTC 1 cut(s) 417
BssECI CCNNGG 6 cut(s) 26, 41, 69, 114, 147, 521
BssMI GATC 1 cut(s) 232
BssT1I CCWWGG 5 cut(s) 26, 41, 114, 147, 521
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 2 cut(s) 311, 530
Bst6I CTCTTC 1 cut(s) 436
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 2 cut(s) 240, 579
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 253, 425, 442
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 3 cut(s) 257, 266, 674
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 297, 392
BstSFI CTRYAG 2 cut(s) 18, 363
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 6 cut(s) 32, 46, 68, 176, 520, 592
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 3 cut(s) 253, 425, 442
BtsIMutI CAGTG 1 cut(s) 526
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 518
CaiI CAGNNNCTG 1 cut(s) 371
Cfr13I GGNCC 2 cut(s) 30, 590
Csp6I GTAC 2 cut(s) 163, 447
CviAII CATG 2 cut(s) 350, 473
CviQI GTAC 2 cut(s) 163, 447
DdeI CTNAG 2 cut(s) 240, 579
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Eco130I CCWWGG 5 cut(s) 26, 41, 114, 147, 521
Eco147I AGGCCT 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 5 cut(s) 26, 41, 114, 147, 521
ErhI CCWWGG 5 cut(s) 26, 41, 114, 147, 521
FaeI CATG 2 cut(s) 353, 476
FaiI YATR 4 cut(s) 351, 359, 452, 474
FatI CATG 2 cut(s) 349, 472
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 6, 194
FokI GGATG 3 cut(s) 260, 412, 449
Fsp4HI GCNGC 2 cut(s) 6, 194
FspBI CTAG 1 cut(s) 665
GluI GCNGC 2 cut(s) 6, 194
HaeIII GGCC 6 cut(s) 32, 46, 68, 176, 520, 592
HapII CCGG 1 cut(s) 393
Hin1II CATG 2 cut(s) 353, 476
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 2 cut(s) 99, 651
HinfI GANTC 3 cut(s) 55, 168, 566
HpaII CCGG 1 cut(s) 393
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 2 cut(s) 295, 346
Hpy188I TCNGA 4 cut(s) 54, 436, 457, 582
Hpy188III TCNNGA 3 cut(s) 203, 284, 671
Hpy8I GTNNAC 2 cut(s) 295, 346
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 311, 530
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 4 cut(s) 20, 212, 260, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 266, 674
HpyF3I CTNAG 2 cut(s) 240, 579
HpySE526I ACGT 1 cut(s) 445
Hsp92II CATG 2 cut(s) 353, 476
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 665
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 1 cut(s) 375
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 423
MluCI AATT 1 cut(s) 255
MlyI GAGTC 1 cut(s) 177
MseI TTAA 3 cut(s) 306, 618, 660
MslI CAYNNNNRTG 1 cut(s) 618
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 299, 394
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 257, 266, 674
NciI CCSGG 1 cut(s) 394
NdeII GATC 1 cut(s) 232
NlaIII CATG 2 cut(s) 353, 476
NlaIV GGNNCC 1 cut(s) 591
PceI AGGCCT 1 cut(s) 520
PfeI GAWTC 2 cut(s) 55, 566
PfoI TCCNGGA 1 cut(s) 392
PkrI GCNGC 2 cut(s) 7, 195
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 591
PspPI GGNCC 2 cut(s) 30, 590
PsrI GAACNNNNNNTAC 2 cut(s) 360, 392
PstI CTGCAG 2 cut(s) 22, 367
PstNI CAGNNNCTG 1 cut(s) 371
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 2 cut(s) 164, 448
RsaNI GTAC 2 cut(s) 163, 447
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 3 cut(s) 306, 618, 660
SatI GCNGC 2 cut(s) 6, 194
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 2 cut(s) 30, 590
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 299, 394
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 2 cut(s) 18, 363
SmiMI CAYNNNNRTG 1 cut(s) 618
Sse9I AATT 1 cut(s) 255
SseBI AGGCCT 1 cut(s) 520
SspMI CTAG 1 cut(s) 665
StuI AGGCCT 1 cut(s) 520
StyD4I CCNGG 2 cut(s) 297, 392
StyI CCWWGG 5 cut(s) 26, 41, 114, 147, 521
TaaI ACNGT 2 cut(s) 311, 530
TaiI ACGT 1 cut(s) 448
TasI AATT 1 cut(s) 255
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 2 cut(s) 55, 566
Tru1I TTAA 3 cut(s) 306, 618, 660
Tru9I TTAA 3 cut(s) 306, 618, 660
TscAI CASTG 1 cut(s) 533
TseI GCWGC 2 cut(s) 5, 193
TspDTI ATGAA 4 cut(s) 348, 408, 456, 495
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 533
XspI CTAG 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.