RLG00000011884

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002163
Physical Location & Seq
Forward (+)
13534724 .. 13535467
744 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011884

Sequence Viewer

Length: 666 bp
ATGGATCGATGTAAACACCTTATTAAAGAGCAGGCTAATGCTTCTACTTATTCCAAGGGGGTTGTTGGTAGTGAACGCCCAAAACCCAAGGTTCGACAAGAGTACAGAGTCAAGGCCAAACATCAAGTTCAGCTGCGTTCTCCTGATGTTGCAGAACAACCTTTTATTGATGATCATTCTAAGAAGGATGCCGAAATTGCAAAGTTTGCTGACAATGTTATTCAAGAAGCTGTGAACCAGGAACTTAACCGTATTGCTGATGTGGTTGTCAATGAAACCATTGTCAACCTTGTGGATATACCTGCAGAAACTGTGTTACAGCAACTTTCCTCAGGGAGAATGGAGCAGGGGTCGCATTCATCATCATCCTCTTCAGATGATGAAAGTACTATATCTGACACATTGGGTTCTCATGTCAGCAATACCATTATCAATCAATCAACTTCATTGGTGCGCAGGCCTTGGCACCGTCTGGTTGAGGAAGAACAAGAGGAGCAAGGGAATGTTAGTGAAGCTTCCTTTAATCTAGCTCTTGAAGTCCAAGAGGTGGCAACTTCAAAAGTGTTAACGAAGTCCCAAAGAAAACATCTAAGGAAGAAAGTTCGTGAGGCTTTGAATGACTCATCAACCCCTCAGAGGGATGCCTTTTTATCATCATCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.7

Weight (kDa)

6.0

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 455
Acc36I ACCTGC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 547
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 2 cut(s) 104, 388
AfiI CCNNNNNNNGG 3 cut(s) 547, 636, 637
AgsI TTSAA 4 cut(s) 224, 536, 558, 616
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 4 cut(s) 133, 230, 515, 530
AluI AGCT 4 cut(s) 133, 230, 515, 530
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 2 cut(s) 114, 458
ApeKI GCWGC 1 cut(s) 133
AspLEI GCGC 1 cut(s) 456
AxyI CCTNAGG 1 cut(s) 331
BanI GGYRCC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 239
BclI TGATCA 1 cut(s) 172
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 2 cut(s) 178, 631
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 3 cut(s) 54, 87, 461
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 547, 636, 637
Bse21I CCTNAGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 3 cut(s) 54, 87, 461
BseGI GGATG 3 cut(s) 193, 365, 646
BseLI CCNNNNNNNGG 3 cut(s) 547, 636, 637
BseMII CTCAG 2 cut(s) 345, 647
BseRI GAGGAG 1 cut(s) 506
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 2 cut(s) 116, 460
BshNI GGYRCC 1 cut(s) 465
BshVI ATCGAT 1 cut(s) 7
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 3 cut(s) 547, 636, 637
BsmFI GGGAC 1 cut(s) 559
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 2 cut(s) 116, 460
Bsp143I GATC 2 cut(s) 4, 172
BspANI GGCC 2 cut(s) 116, 460
BspCNI CTCAG 2 cut(s) 344, 646
BspDI ATCGAT 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 467
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 54, 87, 461
BssMI GATC 2 cut(s) 4, 172
BssT1I CCWWGG 3 cut(s) 54, 87, 461
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 3 cut(s) 251, 313, 470
Bst6I CTCTTC 1 cut(s) 376
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 33, 458
BstDEI CTNAG 4 cut(s) 180, 331, 590, 633
BstF5I GGATG 3 cut(s) 193, 365, 646
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 2 cut(s) 7, 175
BstMBI GATC 2 cut(s) 4, 172
BstMWI GCNNNNNNNGC 3 cut(s) 197, 206, 352
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 120
Bsu15I ATCGAT 1 cut(s) 7
Bsu36I CCTNAGG 1 cut(s) 331
BsuRI GGCC 2 cut(s) 116, 460
BsuTUI ATCGAT 1 cut(s) 7
BtsCI GGATG 3 cut(s) 193, 365, 646
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 33, 458
CaiI CAGNNNCTG 1 cut(s) 311
CfoI GCGC 1 cut(s) 456
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 2 cut(s) 103, 387
CviAII CATG 1 cut(s) 413
CviJI RGCY 8 cut(s) 35, 116, 133, 230, 460, 515, 530, 611
CviKI_1 RGCY 8 cut(s) 35, 116, 133, 230, 460, 515, 530, 611
CviQI GTAC 2 cut(s) 103, 387
DdeI CTNAG 4 cut(s) 180, 331, 590, 633
DpnI GATC 2 cut(s) 6, 174
DpnII GATC 2 cut(s) 4, 172
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco130I CCWWGG 3 cut(s) 54, 87, 461
Eco147I AGGCCT 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 357
Eco81I CCTNAGG 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 3 cut(s) 54, 87, 461
ErhI CCWWGG 3 cut(s) 54, 87, 461
FaeI CATG 1 cut(s) 416
FaiI YATR 3 cut(s) 299, 392, 414
FaqI GGGAC 1 cut(s) 559
FatI CATG 1 cut(s) 412
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 3 cut(s) 200, 352, 653
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 1 cut(s) 527
FspI TGCGCA 1 cut(s) 455
GlaI GCGC 1 cut(s) 455
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 2 cut(s) 116, 460
HhaI GCGC 1 cut(s) 456
Hin1II CATG 1 cut(s) 416
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 2 cut(s) 286, 567
HindII GTYRAC 2 cut(s) 286, 567
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 2 cut(s) 108, 620
HpaI GTTAAC 1 cut(s) 567
Hpy166II GTNNAC 5 cut(s) 14, 74, 235, 286, 567
Hpy188I TCNGA 3 cut(s) 376, 397, 636
Hpy188III TCNNGA 4 cut(s) 143, 224, 533, 605
Hpy8I GTNNAC 5 cut(s) 14, 74, 235, 286, 567
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 3 cut(s) 251, 313, 470
HpyCH4V TGCA 3 cut(s) 152, 200, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 206, 352
HpyF3I CTNAG 4 cut(s) 180, 331, 590, 633
Hsp92II CATG 1 cut(s) 416
HspAI GCGC 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 172
KspAI GTTAAC 1 cut(s) 567
Kzo9I GATC 2 cut(s) 4, 172
LmnI GCTCC 2 cut(s) 343, 493
LpnPI CCDG 9 cut(s) 17, 156, 224, 251, 315, 318, 332, 442, 458
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 2 cut(s) 178, 631
MaeI CTAG 1 cut(s) 527
MaeIII GTNAC 1 cut(s) 315
MalI GATC 2 cut(s) 6, 174
MboI GATC 2 cut(s) 4, 172
MboII GAAGA 3 cut(s) 363, 494, 607
MluCI AATT 1 cut(s) 195
MlyI GAGTC 2 cut(s) 117, 614
MnlI CCTC 8 cut(s) 340, 379, 472, 484, 538, 601, 630, 642
MseI TTAA 4 cut(s) 24, 246, 522, 566
MslI CAYNNNNRTG 1 cut(s) 661
MspA1I CMGCKG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 197, 206, 352
NdeII GATC 2 cut(s) 4, 172
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 1 cut(s) 467
NsbI TGCGCA 1 cut(s) 455
PceI AGGCCT 1 cut(s) 460
PctI GAATGC 1 cut(s) 355
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 2 cut(s) 116, 614
PpsI GAGTC 2 cut(s) 116, 614
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 467
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 2 cut(s) 104, 388
RsaNI GTAC 2 cut(s) 103, 387
RseI CAYNNNNRTG 1 cut(s) 661
SaqAI TTAA 4 cut(s) 24, 246, 522, 566
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 4, 172
ScaI AGTACT 1 cut(s) 388
SchI GAGTC 2 cut(s) 117, 614
ScrFI CCNGG 1 cut(s) 239
SfaNI GCATC 2 cut(s) 178, 631
SfcI CTRYAG 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 661
Sse9I AATT 1 cut(s) 195
SseBI AGGCCT 1 cut(s) 460
SspMI CTAG 1 cut(s) 527
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 3 cut(s) 54, 87, 461
TaaI ACNGT 3 cut(s) 251, 313, 470
TaqI TCGA 2 cut(s) 7, 94
TasI AATT 1 cut(s) 195
TatI WGTACW 2 cut(s) 102, 386
Tru1I TTAA 4 cut(s) 24, 246, 522, 566
Tru9I TTAA 4 cut(s) 24, 246, 522, 566
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 4 cut(s) 288, 348, 396, 435
Van91I CCANNNNNTGG 1 cut(s) 547
XspI CTAG 1 cut(s) 527
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.