Rh1BG311800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002163
Physical Location & Seq
Forward (+)
44621571 .. 44622125
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG311800.1

Sequence Viewer

Length: 555 bp
ATGTGTGAGAATTGTGGGATTGTTGGACACACAATGGATCGATGCAAACACCTTATAAAGGAGCAGGCTCAGGCTCCTACTTATTCTAAGGGGGTTGTTGGCAGTGACCGCCAAAAGCCTAAGATTCGGCAAGAGTACAGAGTCAAGTCCAAGCCTCAAGTTCAGCAGCGTTCTCCTGATATTGCGGAACTGACTATTATTGATGATCATTCTAATAAGGACGCCAAAATTGCCAAGTTTGCTAACAATGTTATTCAAGAGGCTGTGCACCAGGAACTTAACCGTATTGCAGATGTGGTTGTCAATGAAACCATAGTCAATCGTGTGGATATACCTGCAGAGCCTGTGTTACAGCAACTTTCCTCTGGGAGAATGGAGCAGGAGTCTCATCCATCATCATCCTCTTCGGATGATGAACGTACTATATCTGACACATTGGGTTCTCACGTCAGCAATACCATTATCAACCAATCAACTCCTTCGGAGCGCAGACCTTGGCACCAACTGGTTGAGGAGGAACAAGAGGGTGCTTTGAGTGATTCAAGTGCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.51

Weight (kDa)

5.49

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 498
AciI CCGC 2 cut(s) 109, 185
AclWI GGATC 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 137, 421
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 257, 543
AjiI CACGTC 1 cut(s) 448
AjnI CCWGG 1 cut(s) 270
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 390
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 344
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 489
BaeGI GKGCMC 1 cut(s) 270
BanI GGYRCC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 272
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 448
BmiI GGNNCC 2 cut(s) 75, 500
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 510
BseBI CCWGG 1 cut(s) 272
BseCI ATCGAT 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 3 cut(s) 388, 398, 415
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 498
BshVI ATCGAT 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 37, 205
BspACI CCGC 2 cut(s) 109, 185
BspCNI CTCAG 1 cut(s) 82
BspDI ATCGAT 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 75, 500
BspMAI CTGCAG 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 498
BsrI ACTGG 1 cut(s) 510
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 2 cut(s) 37, 205
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 409
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 4 cut(s) 69, 87, 120, 552
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 388, 398, 415
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 2 cut(s) 40, 208
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 2 cut(s) 37, 205
BstMWI GCNNNNNNNGC 3 cut(s) 108, 230, 239
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 40
BsuTUI ATCGAT 1 cut(s) 40
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 3 cut(s) 388, 398, 415
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 109
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 1 cut(s) 489
ClaI ATCGAT 1 cut(s) 40
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 136, 420
CviJI RGCY 6 cut(s) 68, 74, 118, 154, 263, 343
CviKI_1 RGCY 6 cut(s) 68, 74, 118, 154, 263, 343
CviQI GTAC 2 cut(s) 136, 420
DdeI CTNAG 4 cut(s) 69, 87, 120, 552
DpnI GATC 2 cut(s) 39, 207
DpnII GATC 2 cut(s) 37, 205
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 494
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
FaiI YATR 4 cut(s) 56, 314, 332, 425
FalI AAGNNNNNCTT 1 cut(s) 535
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 167
FokI GGATG 3 cut(s) 375, 385, 422
Fsp4HI GCNGC 1 cut(s) 167
GlaI GCGC 1 cut(s) 488
GluI GCNGC 1 cut(s) 167
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 489
Hin1I GRCGYC 1 cut(s) 222
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HinfI GANTC 4 cut(s) 124, 141, 383, 539
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 3 cut(s) 409, 430, 484
Hpy188III TCNNGA 2 cut(s) 176, 257
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 489
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 2 cut(s) 418, 447
HpyCH4V TGCA 4 cut(s) 45, 268, 290, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 230, 239
HpyF3I CTNAG 4 cut(s) 69, 87, 120, 552
HpySE526I ACGT 2 cut(s) 418, 447
Hsp92I GRCGYC 1 cut(s) 222
HspAI GCGC 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 37, 205
LmnI GCTCC 4 cut(s) 61, 79, 376, 484
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 32
MaeII ACGT 2 cut(s) 418, 447
MaeIII GTNAC 2 cut(s) 104, 348
MalI GATC 2 cut(s) 39, 207
MboI GATC 2 cut(s) 37, 205
MboII GAAGA 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 2 cut(s) 10, 228
MlyI GAGTC 2 cut(s) 150, 392
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 7 cut(s) 165, 253, 373, 412, 505, 508, 517
MseI TTAA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 108, 230, 239
NdeII GATC 2 cut(s) 37, 205
NlaIV GGNNCC 2 cut(s) 75, 500
NmuCI GTSAC 1 cut(s) 104
PfeI GAWTC 2 cut(s) 124, 539
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 2 cut(s) 149, 391
PpsI GAGTC 2 cut(s) 149, 391
PsiI TTATAA 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 75, 500
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 344
RsaI GTAC 2 cut(s) 137, 421
RsaNI GTAC 2 cut(s) 136, 420
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 2 cut(s) 37, 205
SchI GAGTC 2 cut(s) 150, 392
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 270
SetI ASST 5 cut(s) 54, 337, 421, 450, 496
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 10, 228
SsiI CCGC 2 cut(s) 109, 185
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 2 cut(s) 421, 450
TaqI TCGA 1 cut(s) 40
TasI AATT 2 cut(s) 10, 228
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 2 cut(s) 124, 539
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 321, 429
TspRI CASTG 1 cut(s) 109
VneI GTGCAC 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.