Rh7CG486800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002163
Physical Location & Seq
Forward (+)
65457964 .. 65460318
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG486800.1

Sequence Viewer

Length: 447 bp
ATGGGACCCACCACCAAAACCCAACAAATTAGTTTTGGGCTGCTGACTTCCCAAAAAATTTTCAGAACCAAAATCCTTCCCTCCGATGAACCAGGTCAAGAATTTGACGACCCATGTCCAAAATTTGATATCAAACACGTCTTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCGCCGGAGACCCAAGATAATAATAGCCTTCGTGGTCGGAGCCGCTCTCCAGCTCCGACGCCGTCGCTTTCCACCACCTATCAGATCATTGTTTTGACTCTTAACTGTAATCTGCAGAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGACGGATTTCTCGAAACTTGCTGGCATGGGAGGTGATGATGCAATGGGTGACTTTGATGATAGCGATGATGAGTTCATGCATTCTTGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.22

Weight (kDa)

4.5

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 243
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 2 cut(s) 200, 241
AcsI RAATTY 3 cut(s) 57, 101, 122
AcyI GRCGYC 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 136
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 3 cut(s) 57, 101, 122
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 3 cut(s) 347, 398, 413
AvaII GGWCC 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 311
BisI GCNGC 2 cut(s) 41, 241
BlsI GCNGC 2 cut(s) 42, 242
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 5
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 3 cut(s) 6, 7, 239
BmrFI CCNGG 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 170
BoxI GACNNNNGTC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 133
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpmI CTGGAG 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 402
BseAI TCCGGA 1 cut(s) 187
BseBI CCWGG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 188, 203
BslFI GGGAC 2 cut(s) 18, 367
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 2 cut(s) 18, 367
BsmI GAATGC 1 cut(s) 433
Bso31I GGTCTC 1 cut(s) 200
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 2 cut(s) 200, 241
BspEI TCCGGA 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 6, 7, 239
BspMAI CTGCAG 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 1 cut(s) 176
BssMI GATC 1 cut(s) 282
BssNI GRCGYC 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 325, 376
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 282
BstNI CCWGG 1 cut(s) 93
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 133
BtgZI GCGATG 1 cut(s) 432
BtrI CACGTC 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 325, 376
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 1 cut(s) 265
CsiI ACCWGGT 1 cut(s) 91
CviAII CATG 4 cut(s) 114, 328, 379, 430
CviJI RGCY 4 cut(s) 40, 225, 240, 251
CviKI_1 RGCY 4 cut(s) 40, 225, 240, 251
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 91
EcoRV GATATC 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 435
FaeI CATG 4 cut(s) 117, 331, 382, 433
FaiI YATR 4 cut(s) 115, 329, 380, 431
FaqI GGGAC 2 cut(s) 18, 367
FatI CATG 4 cut(s) 113, 327, 378, 429
FauI CCCGC 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 41, 241
Fsp4HI GCNGC 2 cut(s) 41, 241
GluI GCNGC 2 cut(s) 41, 241
GsuI CTGGAG 1 cut(s) 231
HapII CCGG 2 cut(s) 188, 203
HgaI GACGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 4 cut(s) 117, 331, 382, 433
HinfI GANTC 2 cut(s) 191, 295
HpaII CCGG 2 cut(s) 188, 203
HphI GGTGA 3 cut(s) 347, 398, 413
Hpy188I TCNGA 5 cut(s) 65, 85, 237, 255, 282
Hpy188III TCNNGA 3 cut(s) 98, 188, 364
Hpy99I CGWCG 2 cut(s) 259, 265
HpyAV CCTTC 3 cut(s) 86, 236, 332
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 4 cut(s) 169, 313, 395, 433
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 4 cut(s) 117, 331, 382, 433
KflI GGGWCCC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 187
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 237, 256
LpnPI CCDG 9 cut(s) 78, 105, 171, 189, 201, 216, 261, 309, 360
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 382
MabI ACCWGGT 1 cut(s) 91
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 401
MalI GATC 1 cut(s) 284
MbiI CCGCTC 1 cut(s) 243
MboI GATC 1 cut(s) 282
MboII GAAGA 3 cut(s) 133, 138, 173
MluCI AATT 5 cut(s) 27, 57, 101, 122, 164
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 2 cut(s) 215, 278
MnlI CCTC 3 cut(s) 91, 326, 377
Mph1103I ATGCAT 1 cut(s) 435
MroI TCCGGA 1 cut(s) 187
MseI TTAA 1 cut(s) 300
MspI CCGG 2 cut(s) 188, 203
MspR9I CCNGG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 1 cut(s) 93
NdeII GATC 1 cut(s) 282
NlaIII CATG 4 cut(s) 117, 331, 382, 433
NlaIV GGNNCC 3 cut(s) 6, 7, 239
NmuCI GTSAC 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 1 cut(s) 191
PflFI GACNNNGTC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 42, 242
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PpuMI RGGWCCY 1 cut(s) 5
PshAI GACNNNNGTC 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 3 cut(s) 6, 7, 239
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PstI CTGCAG 1 cut(s) 315
PsyI GACNNNGTC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 41, 241
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 93
SetI ASST 7 cut(s) 97, 141, 253, 278, 337, 343, 388
SexAI ACCWGGT 1 cut(s) 91
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 311
SinI GGWCC 1 cut(s) 5
Sse9I AATT 5 cut(s) 27, 57, 101, 122, 164
SsiI CCGC 2 cut(s) 200, 241
StyD4I CCNGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 365
TasI AATT 5 cut(s) 27, 57, 101, 122, 164
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 102, 418
TspGWI ACGGA 1 cut(s) 371
Tth111I GACNNNGTC 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 3 cut(s) 57, 101, 122
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.