Rorug03G0060600

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
4532173 .. 4543062
10890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0060600.1

Sequence Viewer

Length: 5973 bp
ATGCCGCCTTCCGACGGCTTCAGCGTCCGCATCGTCTCCGTCGACTTCTACATGGCGCCGCCCATCCCTGGCCTCGATATCTCCTACAGTAGCTTCCACGGTGGGAAGGTGAATGAGGTACCTGTAATAAGAATTTACGGCTCTACTCCGGCCGGTCAGAAAGCTTGTCTGCACATTCACAGAGCATTACCATACCTATTTGTGCCGTGCAAAGATTTACCGATTCAACCACATCAGAAAGGTGATTCGTACACATATGATATATCTCTTGCGTTAGAGAAAGCTTTGAAGCTCAAAAGCAGTGCTGGTTCAAAGCGACAACATGTACATGGTTGCAGCCTTGTCCAGGCAAGGAAGCTTTACGGTTACCATTCATCAGAGGAGGTGTTTGTGAAGATATACCTCTATTATCCACATGATGTGACTCGCGCCGCCAATCTTCTTCTGGGAGGTGCAGTTCTTGATAAATGCTTACAGCCCCACGAATCACACATTCCCTTCATTCTCCAATTTATGATTGACTACAACTTGTATGGGATGGGTCATCTGCATCTATCAAAACTGAAGTTTCGTCATCCAATGCCAGATGCTTTTACCCCTAGGAGATCTTTTTACAATGGACTGCCCGGTCAGGACATAGATAATTTAACTGGGATGTCTACAGATGTCCAGGCAGATATTAGTGACCATCTGCTTTTTGGTTCACCGGTTTGGATATCGTCCACAATTCCAGTAGACTGGACATGGCTTTCTTCTGGTGATGTTGAGGCTTCATCAAATAGAGATGCTAACTGCACTAAACGACAAAGTATTTGTGAACTCGAGGGGGATGCTACTGTAGATGAGATACTCAATCAGCAGTTCAAAATGTATACATCCCTCTCGCAAACTCGTTCTGACGTGAAAATGGTTCAATCGCTTATACCAATTTGGGAGGAGTTTGAGAGAAATGGGATACACGAGGCAGCAATATCTTCTAATCCTGCTAAACCACTTCCAGAAGATGTTTTGAAAACTTTATCACTTGGTCCAGAATTTAATGAGAAACTTGTCAAATTGCATTTTGATACAGAAAACTCTTTGCCTTTAACTCAATTAAAGAAAGATGTAAAGTCTATGCACCAAATGACCTCTCCAAAAGATGGAGGAAATTCTGTTGGACTTCGAACTGATAATCTCAATTATGGAGAGATGATGGGATCTCTGTTGACACAAGGTTCTACTGAAGAGACGGATGCAAAACTGAATAAAGAACTGCCAGCATCTCAAGCGATTCAGACCTTAAATATGAAGGCTGCAGATAATGAAGCACTAGCTCTGCTTAGATGGCTTGCCACTTCTCAGGCAGCTGATGATTTGAACTCCGATGATGAACTTGTTCAGGAGACAATACTGAGTCCTTTGTTGCCTGCAACAACTATTGACAAAGTTCTGGAGAAAGCTAATATGGATTATGAGAGTGAATCCCAAAAGGAATGTCAGGACATCCTTGATTCAGTTGGCGACTTTGAGGGATCAAAGGAAAAAGATTCTTATCCCACTGATCGGAACTGTTCTTCCAAAAGTGAACCTGCATGTATGATTCCCCAGGTGAATGGTACTGGGGATGATGTTCTCTCAACTCCATCTCCTTGTGCCGGATCAATCGAAAATATTTCTGAAGTAGAGATGAAGAATGAACTTAGGACTCCTGAACCCCAGGTTACGAAAGATGGTCTAAGCTCCAATCATAAACACAAAAGGAAAAAATTATTATGGGGCTCTTTACCTTTGTCTGCGGCCCAAAAGCTGAAGACTGAGAGTGAACCTGTCAGTTTGTACAAGGAAACTAAGGATCCTGTTGGTACAAGTGCCTCCTCTGAAAGTGAAGTGAGAAAACATGCAGGCACTGATGCTTGTGATAGTACGTTGGGAAGATGCTCTCTGCGGGACTTGATGAGGAGAAAGCGATCTTATCGAATTGAGCCACCTGAAAAAGAAGATACACTTTATCAAATGTTGCATTTTGACGAACTTAATGGGAAGTCTCGTGATTCTTTAGCTGACAGGCTATCATTAGCCCGACACTCAGCAAGTCATGAGGCTTATGATGTTAAAACAACCAATTCTGGCTGTTCCTTGTATGGTAAACTTCCACTTTTGTCTGGCAGTGTCAACTCTTTAAATGCAAGTATGTTAGATGGAAAATTTGACACGAATATCAACATTGCTGCGGAAGTTGGCACTGGAGCAATTGCTCAACATGGGAACATCTTCACAGCCTCTTCTGAAGCTCCACCTGTGAATACAGGATTCTGGCAATTAAAGCCTAACAAGCTCGAGTCTGAAGCTTCCCTTGGCCGTTGTGAAACTTTCAATAAATCTAATGCTCAGACTTCCAAGTCAGGTGCTGAGGAAAACTTTTTTGTTGATGAGAGTCTTCATAGTTCTGCTGCTGACCCTGAAGTTTCTTGTGGAGATGGTCACACTGGAAGGGGCATTGATGGCTTATCTTCCAGAAGTGGAGTATCCGAGATACCTTTTGAGATTGGCACAAATGTCACAACTGACAAAACTGCTTTAAACAATGAAAGGTGTGGTAGCCAGAAATTGGGGAGAGATTCCTTTTTATCTGGGCTTAGTAACTTGTTGCCCTCGATCATCCAGTCTGATGATAAGGACTTAATTGGCATGACCTTCTCTAGGAAACCCCCAATTGCAGACTGGAAGGATGGGGGATTTCTGAGTTCTTCATATTTACAAGAGGAAGGAGCTTTGGATGATATTCTCCCATTTTTTGTGAGAGACTGCCAAAATGAGACAGACATCGAGAACAACTGTGTTAGAAATAGTGAGTCTCATTCTCATCAAGAATCTGCCTTAGGTGTCCCTACTCACTATCAAGCTGATGGCTCTTGTTTGTATCTGTTAACACCTGCAATTTCACCTCCTTCTGCCAAAAATGTATACCGCTGGCTGTCAAGAGGCGACAAAGGATCTTCTGCGAGTCTGACTGGTTCACAGAATTCTTTGCCTAATGATTTGAACGAGCCTTCACTCAAATATTGTTCTGTATGTGATGTGCAACCTAATCTACCCCAAGGACCTCAAGTAGATAATAGAAATCTTGAAGCAGAAAGGATTCCTTTTTGTAATGACATGACAGAAGTATTGGAAAGAGAAGCCGATGTTATAAGAGTTAAAACATACCCTGACCGCTCACAAGATAGTTCTCAGATTTCAGGTCCAGATGGGAGATCAAAATCCACTCCGCTTAGTCAAACTGGATTTCGAGACCCGGCAAGTGTTGGCATTGGCCAGCAGCTGACGTTGTTAAGTATAGAGGTTCAAGCAGAATCTAGAGGTGATCTTCGACCCGATCCTCAGTTTGATGCTATCAATATTGTATTGCTTGCTATTCAGAATGATTGTGACTCCATCGTTGAAGTTCATGTACTTATGCGCAGCGATGCTGAAAATTGTCAGAGGAGTCATGACGGGATTTCTGACTGCAAGCTGTTTGTGTTTCATGAAGAGAAGTACTTATTTCATCATTTTATCAAGTTTGTATGCTCGTTGGACCCTGATATATTAATGGGTTGGGATATTCAAGGTGGTTCCCTTGGTTTTTTGGCTGAAAGGGCTTCACATCTTGGTATAGGTTTACTCAACAAGATATCTAGAACACCATCTGAAGCCAAGATGGTGGCTGAGGATTCAGAAGTTCCGGAGAAAGTCTTACAAGATAACCTGGCTGCTGACTCAATCGTTGCTGATTCAGTTGTATTAGAAGATCCAATAATTGAGGATGAATGGGGACGGACTCATTCCAGCGGTGTCCATGTTGGTGGTAGAATTGTACTTAATGTCTGGCGGCTGATGCGCAGTGAAGTGAAGCTTAATATGTACACAGTTGAAGCTGTTTCTGAAGTTGTGTTGAGGCGGAAAGTCCCATATATTCCTAATAAACTACTCACAAAATGGTTTTTAAGTGGTCCTGGAAGAGCAAGATACCGATGTATCGAATATGTGAAGGAGAGGGCAGAATTAAACCTTGAGATGATGAATCAATTAGATATGATAAATCGAACATCAGAACTTGCACGTGTCTTTGGCATTGACTTTTTTTCTGTTCTCTCTAGAGGCTCCCAATACCGTGTTGAATCTATGGTTCTGAGACTGGCACATACACAAAACTATCTTGCCATTTCCCCTGGGAAACAACAGGTAGCTTCGCAGCCAGCAATGGAATGCATCCCTCTTGTAATGGAACCAGAATCTGGTTTTTATGCAGATCCAGTAGTTGTTTTGGATTTTCAGTCTCTTTATCCATCAATGATAATTGCATACAACCTTTGCTATTCTACATGCCTTGGAAAAGTTGCGCCTTCAGAGCCAAATACACTTGGTGTCAGTTCATTTTCACCAGATCCACATGATCTGCATGATTTAAAAGATCAAATACTGCTTACTCCAAATGGTGTTATGTGTGTGCCAGCAAAGGTCCGTAAAGGCGTACTGCCACACTTATTGGACGAAATATTGTCAACCAGAATAATGGTTAAACAAGCAATGAAAAAATTGTCTCCATCACAGAAAGTTCTTCACAGGATATTTAATGCAAGACAGCTTGCACTAAAGCTGATAGCAAACGTGACATATGGTTATACAGCTGCTGGATTTAGTGGCCGCATGCCTTGTGCAGAGATTGCAGACAGTATTGTTCAGTGTGGCCGTAGCACACTTGAAAAGGCTATTTCATATGTAAATGCACATGACAGGTGGAAGGCTAGAGTTATTTATGGCGACACAGACAGCATGTTTGTCCTTCTAAAAGGCCGCACTAGGGAAGAGTCTTTTCAGATTGGACAGGAGATTGCATCTGAAATCAGTGCTATGAGTCCGACTCCAGTTGCTTTGAAGATGGAAAAAGTTTATCAGCCATGCTTCCTCCTTACCAAGAAGCGATATGTTGGTTACAGTTATGAAAGCCCTGGACAGAGTGAACCTATTTTTGATGCTAAAGGCATTGAGACAGTTCGCAGGGATACATGTGGGGCTGTTGCCAAGACAATGGAGCAGTCTCTGAGACTTTTTTTTGAACATCAAGACATGCCTGAGGTACAGGTGCATGCGTTAAGGCTCTTTCTAAGGGTAAATGCTTCATTTACTTGTTTGGGTGATCACCTATGTTTTTGTGCACAGGTCAAAGCATACTTACAGCGCCAGTGGAAGCGAATTCTTTCTGGAAGAGTGTCCCTTCAGGATTTTGTATTTGCAAAAGAGGTTCGTCTAGGAACTTACCGTGCTAGTGGTTCATCACTTCCACCAGCTGCAATTGTTGCTACAAAAGCTATGAGAATTGACCCTAGGGCAGAACCACGTTATGCAGAGAGGGTACCTTACGTTGTAATACATGGGGAGCCTGGGGCCCGTCTGGCTGATGTGGTTGTGGATCCTTTGAACCTCCTGGCCACTGATTCACCCTATAGACTAAATGATCTCTATTACATCCAAAAGCAGATAATCCCAGCTTTGCAGCGAGTGTTTGGGCTTGTTGGAGCCGACCTGCAGCAGTGGTTTTCAGATATGCCCCGCCCAGTAAGGGAAGCTTTTGGAAAACGCCCCTCTTATGCTTCAAATCCACACCGAACCAGAATTGACTATTACTATCTTTCAAGGCATTGCATATTGTGTGGTGAGTTGGTCCAGGGATCAGCCCATCTATGCAATCAATGTGCTGAAAACAAAACTGCTGCAGCAGCAGCTATAATCGGAAGAACTTCAAAGCTGGAGAGAGAGATGCAACACCTTGCTGCTATCTGTCGACATTGTGGAGGTGGGGACGCGCTTGAAGGAAATGGCATCAAATGCACTTCTCTTGCATGCTCAGTGTTTTATGAGAGACGCAAAGTTCAGAAAGAACTGCAGGGAACTGCTTCTGTTGCTGCAGAAACAGGTTTGTACCCTCAATGTTTGGTCGAGTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1990

Amino Acids

220.33

Weight (kDa)

5.82

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
REV3_N PF24065 7 - 60 7.5e-18 DNA polymerase zeta catalytic subunit, N-terminal
POL3_N PF24055 62 - 141 8.4e-22 DNA polymerase delta catalytic subunit-like, N-terminal domain
DNA_pol_B_exo1 PF03104 1100 - 1226 1.2e-08 DNA polymerase family B, exonuclease domain
DNA_pol_B PF00136 1368 - 1843 6.1e-99 DNA polymerase family B
zf-C4pol PF14260 1889 - 1962 2.3e-14 C4-type zinc-finger of DNA polymerase delta
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3173
AarI CACCTGC 1 cut(s) 2923
AasI GACNNNNNNGTC 2 cut(s) 627, 2380
Acc16I TGCGCA 2 cut(s) 3443, 3863
Acc36I ACCTGC 3 cut(s) 1579, 2923, 5556
Acc65I GGTACC 2 cut(s) 118, 5377
AccB1I GGYRCC 3 cut(s) 55, 118, 5377
AccB7I CCANNNNNTGG 3 cut(s) 1142, 2590, 4259
AccBSI CCGCTC 1 cut(s) 3198
AccI GTMKAC 6 cut(s) 42, 659, 735, 872, 2946, 5806
AccII CGCG 2 cut(s) 429, 5828
AccIII TCCGGA 1 cut(s) 3706
AcoI YGGCCR 6 cut(s) 150, 2338, 3295, 4666, 4711, 5451
AcsI RAATTY 6 cut(s) 132, 1034, 1150, 2186, 3004, 5217
AcvI CACGTG 1 cut(s) 4085
AcyI GRCGYC 1 cut(s) 56
AdeI CACNNNGTG 1 cut(s) 4388
AflIII ACRYGT 3 cut(s) 322, 4084, 5030
AgeI ACCGGT 1 cut(s) 706
AjiI CACGTC 1 cut(s) 901
AjuI GAANNNNNNNTTGG 2 cut(s) 2319, 2351
AloI GAACNNNNNNTCC 4 cut(s) 441, 473, 1541, 1573
Alw21I GWGCWC 1 cut(s) 5182
Alw44I GTGCAC 1 cut(s) 5178
AlwNI CAGNNNCTG 6 cut(s) 1889, 2390, 3304, 4259, 4655, 5065
Ama87I CYCGRG 2 cut(s) 821, 2318
Aor13HI TCCGGA 1 cut(s) 3706
ApaI GGGCCC 1 cut(s) 5413
ApaLI GTGCAC 1 cut(s) 5178
ApoI RAATTY 6 cut(s) 132, 1034, 1150, 2186, 3004, 5217
ArsI GACNNNNNNTTYG 6 cut(s) 795, 827, 1462, 1494, 4784, 4816
AseI ATTAAT 1 cut(s) 3572
AsiGI ACCGGT 1 cut(s) 706
Asp700I GAANNNNTTC 6 cut(s) 1377, 2252, 3120, 5221, 5761, 5917
Asp718I GGTACC 2 cut(s) 118, 5377
AspA2I CCTAGG 2 cut(s) 599, 5348
AspLEI GCGC 7 cut(s) 58, 431, 3444, 3864, 4366, 5205, 5830
AsuC2I CCSGG 2 cut(s) 627, 3278
AsuII TTCGAA 1 cut(s) 1165
AvaI CYCGRG 2 cut(s) 821, 2318
AvaII GGWCC 7 cut(s) 1028, 3083, 3224, 3559, 3974, 4483, 5686
AvrII CCTAGG 2 cut(s) 599, 5348
AxyI CCTNAGG 2 cut(s) 2860, 5097
BaeGI GKGCMC 2 cut(s) 5182, 5413
BaeI ACNNNNGTAYC 4 cut(s) 3982, 3982, 4015, 4015
BalI TGGCCA 2 cut(s) 3297, 5453
BamHI GGATCC 2 cut(s) 1834, 5434
BanI GGYRCC 3 cut(s) 55, 118, 5377
BanII GRGCYC 2 cut(s) 1763, 5413
BarI GAAGNNNNNNTAC 2 cut(s) 3417, 3449
BauI CACGAG 2 cut(s) 959, 2028
BbrPI CACGTG 1 cut(s) 4085
BbsI GAAGAC 2 cut(s) 1799, 2411
Bbv12I GWGCWC 1 cut(s) 5182
BbvCI CCTCAGC 2 cut(s) 2391, 3690
BceAI ACGGC 5 cut(s) 31, 154, 190, 2325, 4698
BcgI CGANNNNNNTGC 2 cut(s) 812, 846
BciVI GTATCC 3 cut(s) 948, 2518, 5020
BclI TGATCA 1 cut(s) 5161
BcnI CCSGG 2 cut(s) 627, 3278
BfmI CTRYAG 9 cut(s) 85, 660, 837, 1296, 5467, 5549, 5736, 5906, 5928
BfoI RGCGCY 2 cut(s) 59, 5206
BfuAI ACCTGC 3 cut(s) 1579, 2923, 5556
BfuI GTATCC 3 cut(s) 948, 2518, 5020
BglI GCCNNNNNGGC 1 cut(s) 5417
BglII AGATCT 1 cut(s) 605
BlnI CCTAGG 2 cut(s) 599, 5348
BmcAI AGTACT 1 cut(s) 3521
Bme18I GGWCC 7 cut(s) 1028, 3083, 3224, 3559, 3974, 4483, 5686
BmeT110I CYCGRG 2 cut(s) 821, 2318
BmgBI CACGTC 1 cut(s) 901
BmrI ACTGGG 3 cut(s) 660, 1611, 5573
BmuI ACTGGG 3 cut(s) 660, 1611, 5573
BpiI GAAGAC 2 cut(s) 1799, 2411
BplI GAGNNNNNCTC 2 cut(s) 4870, 4902
BpmI CTGGAG 4 cut(s) 1454, 2247, 4872, 5792
Bpu10I CCTNAGC 2 cut(s) 2391, 3690
Bpu14I TTCGAA 1 cut(s) 1165
BpuEI CTTGAG 3 cut(s) 1251, 3072, 4055
BpuMI CCSGG 2 cut(s) 627, 3278
BsaAI YACGTR 1 cut(s) 4085
BsaBI GATNNNNATC 2 cut(s) 1533, 3241
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 3267
BsaWI WCCGGW 2 cut(s) 706, 3706
BsaXI ACNNNNNCTCC 4 cut(s) 441, 471, 1612, 1642
Bse118I RCCGGY 2 cut(s) 152, 706
Bse21I CCTNAGG 2 cut(s) 2860, 5097
Bse3DI GCAATG 4 cut(s) 2205, 4230, 4557, 5662
Bse8I GATNNNNATC 2 cut(s) 1533, 3241
BseAI TCCGGA 1 cut(s) 3706
BseJI GATNNNNATC 2 cut(s) 1533, 3241
BseMI GCAATG 4 cut(s) 2205, 4230, 4557, 5662
BseRI GAGGAG 5 cut(s) 395, 950, 1846, 1954, 3481
BseSI GKGCMC 2 cut(s) 5182, 5413
BseX3I CGGCCG 1 cut(s) 150
BseYI CCCAGC 1 cut(s) 5509
BsgI GTGCAG 4 cut(s) 155, 474, 778, 4701
Bsh1236I CGCG 2 cut(s) 429, 5828
Bsh1285I CGRYCG 1 cut(s) 153
BshNI GGYRCC 3 cut(s) 55, 118, 5377
BshTI ACCGGT 1 cut(s) 706
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 5182
BsiHKCI CYCGRG 2 cut(s) 821, 2318
BsiSI CCGG 7 cut(s) 149, 153, 627, 707, 1638, 3278, 3707
BslFI GGGAC 6 cut(s) 1943, 2852, 3810, 3914, 5221, 5837
BsmBI CGTCTC 3 cut(s) 40, 1223, 5878
BsmFI GGGAC 6 cut(s) 1943, 2852, 3810, 3914, 5221, 5837
BsmI GAATGC 1 cut(s) 4235
Bso31I GGTCTC 1 cut(s) 3267
BsoBI CYCGRG 2 cut(s) 821, 2318
Bsp119I TTCGAA 1 cut(s) 1165
Bsp120I GGGCCC 1 cut(s) 5409
Bsp1286I GDGCHC 3 cut(s) 1763, 5182, 5413
Bsp13I TCCGGA 1 cut(s) 3706
Bsp1407I TGTACA 3 cut(s) 325, 1818, 3885
BspEI TCCGGA 1 cut(s) 3706
BspFNI CGCG 2 cut(s) 429, 5828
BspHI TCATGA 3 cut(s) 2077, 3472, 3508
BspMAI CTGCAG 5 cut(s) 1300, 5553, 5740, 5910, 5932
BspMI ACCTGC 3 cut(s) 1579, 2923, 5556
BspQI GCTCTTC 1 cut(s) 3976
BspT104I TTCGAA 1 cut(s) 1165
BspT107I GGYRCC 3 cut(s) 55, 118, 5377
BspTNI GGTCTC 1 cut(s) 3267
BsrBI CCGCTC 1 cut(s) 3198
BsrDI GCAATG 4 cut(s) 2205, 4230, 4557, 5662
BsrFI RCCGGY 2 cut(s) 152, 706
BsrGI TGTACA 3 cut(s) 325, 1818, 3885
BssAI RCCGGY 2 cut(s) 152, 706
BssNAI GTATAC 2 cut(s) 873, 2947
BssNI GRCGYC 1 cut(s) 56
BssSI CACGAG 2 cut(s) 959, 2028
BssT1I CCWWGG 6 cut(s) 599, 2335, 3079, 3601, 4351, 5348
Bst1107I GTATAC 2 cut(s) 873, 2947
Bst2BI CACGAG 2 cut(s) 959, 2028
Bst6I CTCTTC 6 cut(s) 1221, 2269, 3507, 3976, 4824, 5224
BstACI GRCGYC 1 cut(s) 56
BstAPI GCANNNNNTGC 3 cut(s) 4688, 5321, 5850
BstAUI TGTACA 3 cut(s) 325, 1818, 3885
BstBAI YACGTR 1 cut(s) 4085
BstBI TTCGAA 1 cut(s) 1165
BstDSI CCRYGG 1 cut(s) 97
BstEII GGTNACC 1 cut(s) 365
BstENI CCTNNNNNAGG 2 cut(s) 344, 2680
BstFNI CGCG 2 cut(s) 429, 5828
BstH2I RGCGCY 2 cut(s) 59, 5206
BstHHI GCGC 7 cut(s) 58, 431, 3444, 3864, 4366, 5205, 5830
BstMCI CGRYCG 1 cut(s) 153
BstPI GGTNACC 1 cut(s) 365
BstSFI CTRYAG 9 cut(s) 85, 660, 837, 1296, 5467, 5549, 5736, 5906, 5928
BstSLI GKGCMC 2 cut(s) 5182, 5413
BstUI CGCG 2 cut(s) 429, 5828
BstV2I GAAGAC 2 cut(s) 1799, 2411
BstX2I RGATCY 8 cut(s) 605, 1199, 1834, 2975, 3772, 4273, 4408, 5434
BstXI CCANNNNNNTGG 6 cut(s) 738, 1595, 3685, 3827, 4537, 5053
BstYI RGATCY 8 cut(s) 605, 1199, 1834, 2975, 3772, 4273, 4408, 5434
BstZ17I GTATAC 2 cut(s) 873, 2947
BstZI CGGCCG 1 cut(s) 150
Bsu36I CCTNAGG 2 cut(s) 2860, 5097
BsuI GTATCC 3 cut(s) 948, 2518, 5020
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 3462
BtrI CACGTC 1 cut(s) 901
BtsI GCAGTG 4 cut(s) 307, 2155, 3871, 5561
BveI ACCTGC 3 cut(s) 1579, 2923, 5556
CaiI CAGNNNCTG 6 cut(s) 1889, 2390, 3304, 4259, 4655, 5065
CciI TCATGA 3 cut(s) 2077, 3472, 3508
CfoI GCGC 7 cut(s) 58, 431, 3444, 3864, 4366, 5205, 5830
Cfr10I RCCGGY 2 cut(s) 152, 706
CseI GACGC 3 cut(s) 13, 5834, 5895
CspAI ACCGGT 1 cut(s) 706
CspCI CAANNNNNGTGG 2 cut(s) 4491, 4526
DinI GGCGCC 1 cut(s) 57
DraI TTTAAA 3 cut(s) 2163, 2562, 4431
DraIII CACNNNGTG 1 cut(s) 4388
DrdI GACNNNNNNGTC 2 cut(s) 627, 2380
DseDI GACNNNNNNGTC 2 cut(s) 627, 2380
EaeI YGGCCR 6 cut(s) 150, 2338, 3295, 4666, 4711, 5451
EagI CGGCCG 1 cut(s) 150
Eam1104I CTCTTC 6 cut(s) 1221, 2269, 3507, 3976, 4824, 5224
EarI CTCTTC 6 cut(s) 1221, 2269, 3507, 3976, 4824, 5224
EciI GGCGGA 1 cut(s) 3937
EclXI CGGCCG 1 cut(s) 150
Eco130I CCWWGG 6 cut(s) 599, 2335, 3079, 3601, 4351, 5348
Eco24I GRGCYC 2 cut(s) 1763, 5413
Eco31I GGTCTC 1 cut(s) 3267
Eco32I GATATC 3 cut(s) 79, 717, 3657
Eco47I GGWCC 7 cut(s) 1028, 3083, 3224, 3559, 3974, 4483, 5686
Eco52I CGGCCG 1 cut(s) 150
Eco72I CACGTG 1 cut(s) 4085
Eco81I CCTNAGG 2 cut(s) 2860, 5097
Eco88I CYCGRG 2 cut(s) 821, 2318
Eco91I GGTNACC 1 cut(s) 365
EcoNI CCTNNNNNAGG 2 cut(s) 344, 2680
EcoO109I RGGNCCY 2 cut(s) 3083, 5409
EcoO65I GGTNACC 1 cut(s) 365
EcoRI GAATTC 2 cut(s) 3004, 5217
EcoRV GATATC 3 cut(s) 79, 717, 3657
EcoT14I CCWWGG 6 cut(s) 599, 2335, 3079, 3601, 4351, 5348
EcoT22I ATGCAT 1 cut(s) 4235
EcoT38I GRGCYC 2 cut(s) 1763, 5413
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
ErhI CCWWGG 6 cut(s) 599, 2335, 3079, 3601, 4351, 5348
Esp3I CGTCTC 3 cut(s) 40, 1223, 5878
FaqI GGGAC 6 cut(s) 1943, 2852, 3810, 3914, 5221, 5837
FauI CCCGC 2 cut(s) 1920, 5582
FauNDI CATATG 3 cut(s) 256, 4639, 4741
FbaI TGATCA 1 cut(s) 5161
FblI GTMKAC 6 cut(s) 42, 659, 735, 872, 2946, 5806
FriOI GRGCYC 2 cut(s) 1763, 5413
FspI TGCGCA 2 cut(s) 3443, 3863
GlaI GCGC 7 cut(s) 57, 430, 3443, 3863, 4365, 5204, 5829
GsaI CCCAGC 1 cut(s) 5513
GsuI CTGGAG 4 cut(s) 1454, 2247, 4872, 5792
HaeII RGCGCY 2 cut(s) 59, 5206
HapII CCGG 7 cut(s) 149, 153, 627, 707, 1638, 3278, 3707
HgaI GACGC 3 cut(s) 13, 5834, 5895
HhaI GCGC 7 cut(s) 58, 431, 3444, 3864, 4366, 5205, 5830
Hin1I GRCGYC 1 cut(s) 56
Hin6I GCGC 7 cut(s) 56, 429, 3442, 3862, 4364, 5203, 5828
HinP1I GCGC 7 cut(s) 56, 429, 3442, 3862, 4364, 5203, 5828
HincII GTYRAC 6 cut(s) 43, 1209, 2155, 2910, 4527, 5807
HindII GTYRAC 6 cut(s) 43, 1209, 2155, 2910, 4527, 5807
HindIII AAGCTT 6 cut(s) 162, 282, 356, 2328, 3875, 5589
HpaI GTTAAC 1 cut(s) 2910
HpaII CCGG 7 cut(s) 149, 153, 627, 707, 1638, 3278, 3707
Hpy99I CGWCG 2 cut(s) 17, 44
HpyCH4IV ACGT 7 cut(s) 900, 1907, 3308, 4084, 4632, 5362, 5385
HpySE526I ACGT 7 cut(s) 900, 1907, 3308, 4084, 4632, 5362, 5385
Hsp92I GRCGYC 1 cut(s) 56
HspAI GCGC 7 cut(s) 56, 429, 3442, 3862, 4364, 5203, 5828
KasI GGCGCC 1 cut(s) 55
Kpn2I TCCGGA 1 cut(s) 3706
KpnI GGTACC 2 cut(s) 122, 5381
Ksp22I TGATCA 1 cut(s) 5161
KspAI GTTAAC 1 cut(s) 2910
LguI GCTCTTC 1 cut(s) 3976
LmnI GCTCC 8 cut(s) 1727, 2228, 2278, 2750, 4130, 5056, 5401, 5540
MaeII ACGT 7 cut(s) 900, 1907, 3308, 4084, 4632, 5362, 5385
MbiI CCGCTC 1 cut(s) 3198
MfeI CAATTG 3 cut(s) 2232, 2694, 5316
MflI RGATCY 8 cut(s) 605, 1199, 1834, 2975, 3772, 4273, 4408, 5434
MhlI GDGCHC 3 cut(s) 1763, 5182, 5413
MlsI TGGCCA 2 cut(s) 3297, 5453
MluNI TGGCCA 2 cut(s) 3297, 5453
Mly113I GGCGCC 1 cut(s) 56
MmeI TCCRAC 5 cut(s) 36, 1138, 3537, 4907, 5518
Mox20I TGGCCA 2 cut(s) 3297, 5453
Mph1103I ATGCAT 1 cut(s) 4235
MroI TCCGGA 1 cut(s) 3706
MroXI GAANNNNTTC 6 cut(s) 1377, 2252, 3120, 5221, 5761, 5917
MscI TGGCCA 2 cut(s) 3297, 5453
MslI CAYNNNNRTG 2 cut(s) 327, 3825
Msp20I TGGCCA 2 cut(s) 3297, 5453
MspA1I CMGCKG 6 cut(s) 1349, 2952, 3304, 3813, 4652, 5312
MspI CCGG 7 cut(s) 149, 153, 627, 707, 1638, 3278, 3707
MunI CAATTG 3 cut(s) 2232, 2694, 5316
Mva1269I GAATGC 1 cut(s) 4235
MvnI CGCG 2 cut(s) 429, 5828
NarI GGCGCC 1 cut(s) 56
NciI CCSGG 2 cut(s) 627, 3278
NdeI CATATG 3 cut(s) 256, 4639, 4741
NmuCI GTSAC 6 cut(s) 421, 683, 2462, 2539, 3410, 4633
NsbI TGCGCA 2 cut(s) 3443, 3863
NsiI ATGCAT 1 cut(s) 4235
NspV TTCGAA 1 cut(s) 1165
PaeI GCATGC 3 cut(s) 4675, 5114, 5868
PaeR7I CTCGAG 2 cut(s) 821, 2318
PagI TCATGA 3 cut(s) 2077, 3472, 3508
PaqCI CACCTGC 1 cut(s) 2923
PasI CCCWGGG 1 cut(s) 4193
PciI ACATGT 2 cut(s) 322, 5030
PciSI GCTCTTC 1 cut(s) 3976
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 39
PctI GAATGC 1 cut(s) 4235
PdmI GAANNNNTTC 6 cut(s) 1377, 2252, 3120, 5221, 5761, 5917
PflMI CCANNNNNTGG 3 cut(s) 1142, 2590, 4259
PfoI TCCNGGA 1 cut(s) 3976
PinAI ACCGGT 1 cut(s) 706
PluTI GGCGCC 1 cut(s) 59
PmaCI CACGTG 1 cut(s) 4085
PmlI CACGTG 1 cut(s) 4085
Ppu21I YACGTR 1 cut(s) 4085
PpuMI RGGWCCY 1 cut(s) 3083
PscI ACATGT 2 cut(s) 322, 5030
PshBI ATTAAT 1 cut(s) 3572
PsiI TTATAA 1 cut(s) 3173
Psp5II RGGWCCY 1 cut(s) 3083
PspCI CACGTG 1 cut(s) 4085
PspEI GGTNACC 1 cut(s) 365
PspFI CCCAGC 1 cut(s) 5509
PspOMI GGGCCC 1 cut(s) 5409
PspPPI RGGWCCY 1 cut(s) 3083
PspXI VCTCGAGB 2 cut(s) 821, 2318
PstI CTGCAG 5 cut(s) 1300, 5553, 5740, 5910, 5932
PstNI CAGNNNCTG 6 cut(s) 1889, 2390, 3304, 4259, 4655, 5065
PsuI RGATCY 8 cut(s) 605, 1199, 1834, 2975, 3772, 4273, 4408, 5434
PvuII CAGCTG 4 cut(s) 1349, 3304, 4652, 5312
RseI CAYNNNNRTG 2 cut(s) 327, 3825
SalI GTCGAC 2 cut(s) 41, 5805
SapI GCTCTTC 1 cut(s) 3976
ScaI AGTACT 1 cut(s) 3521
SduI GDGCHC 3 cut(s) 1763, 5182, 5413
SfcI CTRYAG 9 cut(s) 85, 660, 837, 1296, 5467, 5549, 5736, 5906, 5928
SfoI GGCGCC 1 cut(s) 57
Sfr274I CTCGAG 2 cut(s) 821, 2318
SfuI TTCGAA 1 cut(s) 1165
SinI GGWCC 7 cut(s) 1028, 3083, 3224, 3559, 3974, 4483, 5686
SlaI CTCGAG 2 cut(s) 821, 2318
SmiMI CAYNNNNRTG 2 cut(s) 327, 3825
SmlI CTYRAG 5 cut(s) 821, 1266, 2318, 3087, 4034
SmoI CTYRAG 5 cut(s) 821, 1266, 2318, 3087, 4034
SphI GCATGC 3 cut(s) 4675, 5114, 5868
SspDI GGCGCC 1 cut(s) 55
SspI AATATT 4 cut(s) 1654, 3044, 3382, 4521
StyI CCWWGG 6 cut(s) 599, 2335, 3079, 3601, 4351, 5348
TaiI ACGT 7 cut(s) 903, 1910, 3311, 4087, 4635, 5365, 5388
TatI WGTACW 6 cut(s) 325, 1818, 3433, 3519, 3838, 3885
TauI GCSGC 7 cut(s) 7, 61, 434, 1781, 3856, 4671, 4821
TseFI GTSAC 6 cut(s) 421, 683, 2462, 2539, 3410, 4633
Tsp45I GTSAC 6 cut(s) 421, 683, 2462, 2539, 3410, 4633
TspGWI ACGGA 4 cut(s) 28, 1247, 3814, 4475
Van91I CCANNNNNTGG 3 cut(s) 1142, 2590, 4259
VneI GTGCAC 1 cut(s) 5178
VpaK11BI GGWCC 7 cut(s) 1028, 3083, 3224, 3559, 3974, 4483, 5686
VspI ATTAAT 1 cut(s) 3572
XagI CCTNNNNNAGG 2 cut(s) 344, 2680
XapI RAATTY 6 cut(s) 132, 1034, 1150, 2186, 3004, 5217
XbaI TCTAGA 3 cut(s) 3338, 3659, 4118
XcmI CCANNNNNNNNNTGG 3 cut(s) 442, 695, 2700
XhoI CTCGAG 2 cut(s) 821, 2318
XmaJI CCTAGG 2 cut(s) 599, 5348
XmiI GTMKAC 6 cut(s) 42, 659, 735, 872, 2946, 5806
XmnI GAANNNNTTC 6 cut(s) 1377, 2252, 3120, 5221, 5761, 5917
ZrmI AGTACT 1 cut(s) 3521
Zsp2I ATGCAT 1 cut(s) 4235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.