Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004217.1

Orthogroup ID

OG0002163

Physical Location & Seq

Genomic Coordinates Reverse (-)

3252 .. 3930

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004217.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgatggtacaggtcgtggaaagagataagaggaagagaaagaagagaagagattttgagatcatcaaggaccaaaagtcgacgccagcagcctcctgcatctcctcccttcaactgaatctacatcgccaccttcctcgtcatcatcaccagtttgatcagggcatctgtctcctccgaccattcatagacccgccaactacaatcaccaatctgagggtgttcgccgatttgagggtgttcgctaatcatgggcgcagtccttcaccagagtccaagatccggctcgagaaggatccgttgctgccgatggctctaaccaactggatctggaaggcttttttgcctgcagggtcgacccgggaccatgaggtggtgaatgtgagtggatcgaacgcggtggagctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

136

Amino Acids

15.66

Weight (kDa)

10.09

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002163)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0297061 RchiOBHm_Chr7g0200861 RchiOBHm_Chr7g0230581
rosa_laevigata	RLG00000007368 RLG00000011884 RLG00000013442 RLG00000017274 RLG00000017275 RLG00000017988 RLG00000034354
rosa_multiflora	Rmu_sc0001750.1_g000005 Rmu_sc0004217.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047140 Rroxscaffold_2G00119870 Rroxscaffold_3G00251030 Rroxscaffold_4G00327060 Rroxscaffold_7G00214510
rosa_rugosa	Rorug02G0595700 Rorug02G0595700 Rorug03G0060600 Rorug03G0060700.1 Rorug03G0060800.1 Rorug05G0392400
rosa_samantha	Rh1AG166100 Rh1AG166200 Rh1AG166300 Rh1BG311800 Rh1CG154700 Rh1DG058100 Rh1DG343500 Rh2AG239200 Rh2AG239300 Rh2AG319700 Rh2CG016900 Rh3CG322700 Rh3DG271400 Rh4DG201000 Rh5DG159900 Rh6CG122200 Rh6CG122300 Rh6CG508600 Rh6DG109500 Rh7CG486800 Rh7DG455200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	2 cut(s)	80, 356
AccII	CGCG	1 cut(s)	398
AciI	CCGC	2 cut(s)	194, 398
AclWI	GGATC	5 cut(s)	274, 290, 303, 335, 397
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	4 cut(s)	216, 234, 282, 373
AgsI	TTSAA	1 cut(s)	113
AhdI	GACNNNNNGTC	1 cut(s)	76
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	5 cut(s)	274, 290, 303, 335, 397
Ama87I	CYCGRG	2 cut(s)	287, 360
ApeKI	GCWGC	2 cut(s)	89, 304
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	70, 364
AsuC2I	CCSGG	2 cut(s)	361, 362
AsuHPI	GGTGA	4 cut(s)	140, 199, 258, 388
AvaI	CYCGRG	2 cut(s)	287, 360
AvaII	GGWCC	2 cut(s)	70, 364
BamHI	GGATCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	101, 291
BccI	CCATC	1 cut(s)	304
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	361, 362
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	409
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	2 cut(s)	90, 305
BlsI	GCNGC	2 cut(s)	91, 306
Bme1390I	CCNGG	2 cut(s)	361, 362
Bme18I	GGWCC	2 cut(s)	70, 364
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmeT110I	CYCGRG	2 cut(s)	287, 360
BmgT120I	GGNCC	2 cut(s)	70, 364
BmiI	GGNNCC	2 cut(s)	297, 365
BmrFI	CCNGG	2 cut(s)	361, 362
BmsI	GCATC	2 cut(s)	108, 174
BpuMI	CCSGG	2 cut(s)	361, 362
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 234, 282, 373
Bse1I	ACTGG	2 cut(s)	151, 329
BseDI	CCNNGG	1 cut(s)	360
BseLI	CCNNNNNNNGG	4 cut(s)	216, 234, 282, 373
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	2 cut(s)	151, 329
BseRI	GAGGAG	2 cut(s)	94, 164
BseXI	GCAGC	2 cut(s)	101, 291
Bsh1236I	CGCG	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	2 cut(s)	287, 360
BsiSI	CCGG	2 cut(s)	283, 361
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	4 cut(s)	216, 234, 282, 373
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	377
BsoBI	CYCGRG	2 cut(s)	287, 360
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	6 cut(s)	60, 157, 279, 295, 327, 389
BspACI	CCGC	2 cut(s)	194, 398
BspCNI	CTCAG	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	297, 365
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	5 cut(s)	274, 290, 303, 335, 397
BsrI	ACTGG	2 cut(s)	151, 329
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	6 cut(s)	60, 157, 279, 295, 327, 389
BssNI	GRCGYC	1 cut(s)	83
Bst6I	CTCTTC	3 cut(s)	29, 38, 43
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	87, 348
BstDEI	CTNAG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	6 cut(s)	63, 160, 282, 298, 330, 392
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	6 cut(s)	60, 157, 279, 295, 327, 389
BstSCI	CCNGG	2 cut(s)	359, 360
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	101, 291
BstX2I	RGATCY	3 cut(s)	279, 295, 327
BstYI	RGATCY	3 cut(s)	279, 295, 327
BtgZI	GCGATG	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	87, 348
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	70, 364
Cfr9I	CCCGGG	1 cut(s)	360
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	2 cut(s)	251, 368
CviJI	RGCY	5 cut(s)	92, 286, 314, 338, 406
CviKI_1	RGCY	5 cut(s)	92, 286, 314, 338, 406
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	6 cut(s)	62, 159, 281, 297, 329, 391
DpnII	GATC	6 cut(s)	60, 157, 279, 295, 327, 389
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	29, 38, 43
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	3 cut(s)	29, 38, 43
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	70, 364
Eco53kI	GAGCTC	1 cut(s)	406
Eco88I	CYCGRG	2 cut(s)	287, 360
EcoICRI	GAGCTC	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	2 cut(s)	254, 371
FaiI	YATR	3 cut(s)	188, 252, 369
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	2 cut(s)	250, 367
FauI	CCCGC	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	157
FblI	GTMKAC	2 cut(s)	80, 356
Fnu4HI	GCNGC	2 cut(s)	90, 305
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	2 cut(s)	90, 305
FspBI	CTAG	1 cut(s)	409
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	2 cut(s)	90, 305
HapII	CCGG	2 cut(s)	283, 361
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	254, 371
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	2 cut(s)	81, 357
HindII	GTYRAC	2 cut(s)	81, 357
HinfI	GANTC	2 cut(s)	118, 272
HpaII	CCGG	2 cut(s)	283, 361
HphI	GGTGA	4 cut(s)	140, 199, 258, 388
Hpy166II	GTNNAC	2 cut(s)	81, 357
Hpy188I	TCNGA	2 cut(s)	179, 216
Hpy188III	TCNNGA	2 cut(s)	289, 331
Hpy8I	GTNNAC	2 cut(s)	81, 357
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	5 cut(s)	119, 143, 273, 286, 328
HpyCH4V	TGCA	2 cut(s)	99, 350
HpyF3I	CTNAG	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	254, 371
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	6 cut(s)	60, 157, 279, 295, 327, 389
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	2 cut(s)	101, 291
LweI	GCATC	2 cut(s)	108, 174
MaeI	CTAG	1 cut(s)	409
MalI	GATC	6 cut(s)	62, 159, 281, 297, 329, 391
MboI	GATC	6 cut(s)	60, 157, 279, 295, 327, 389
MboII	GAAGA	3 cut(s)	46, 55, 60
MflI	RGATCY	3 cut(s)	279, 295, 327
MhlI	GDGCHC	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	8 cut(s)	24, 103, 115, 147, 185, 210, 228, 364
MspI	CCGG	2 cut(s)	283, 361
MspR9I	CCNGG	2 cut(s)	361, 362
MvnI	CGCG	1 cut(s)	398
NciI	CCSGG	2 cut(s)	361, 362
NdeII	GATC	6 cut(s)	60, 157, 279, 295, 327, 389
NlaIII	CATG	2 cut(s)	254, 371
NlaIV	GGNNCC	2 cut(s)	297, 365
PaeR7I	CTCGAG	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	91, 306
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	297, 365
PspPI	GGNCC	2 cut(s)	70, 364
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	3 cut(s)	279, 295, 327
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SacI	GAGCTC	1 cut(s)	408
SalI	GTCGAC	2 cut(s)	79, 355
SatI	GCNGC	2 cut(s)	90, 305
Sau3AI	GATC	6 cut(s)	60, 157, 279, 295, 327, 389
Sau96I	GGNCC	2 cut(s)	70, 364
SbfI	CCTGCAGG	1 cut(s)	352
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	361, 362
SdaI	CCTGCAGG	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	4 cut(s)	15, 135, 375, 408
SfaNI	GCATC	2 cut(s)	108, 174
SfcI	CTRYAG	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	287
SinI	GGWCC	2 cut(s)	70, 364
SlaI	CTCGAG	1 cut(s)	287
SmaI	CCCGGG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse8387I	CCTGCAGG	1 cut(s)	352
SsiI	CCGC	2 cut(s)	194, 398
SspMI	CTAG	1 cut(s)	409
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	359, 360
TaqI	TCGA	4 cut(s)	80, 288, 356, 392
TfiI	GAWTC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	89, 304
TspDTI	ATGAA	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	288
TspMI	CCCGGG	1 cut(s)	360
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	70, 364
XhoI	CTCGAG	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	360
XmiI	GTMKAC	2 cut(s)	80, 356
XspI	CTAG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.