Rh2AG239300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002163
Physical Location & Seq
Reverse (-)
26104529 .. 26106526
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG239300.1

Sequence Viewer

Length: 555 bp
ATGGGGAGTCTTCTTCTCATAACATTTGAATATGACATTATTAGTAATACTACTGTCGATTCCAAATCCACCTTGGAGATCCAGACCCGATTGCTCGGGACCCACCGCCGTCGATACTTCACCAGGCAGCTGCGTAAACCAGATGATACATGGACCAACACAGCATACCTGACTGTTGCAACAATCAATCTTCCACACCAGTTCCCGTCTTCTCCTCTTCTCACAGTTCCAAAAAAAATTTTCAGAACCCAAATCCTTCCCTCCGATGAACCATGTCAAGAATTTGACAACCCATGTCAAGAATTTGATATCAAACACGTCTTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCGCCAGAGACCCAAAATAATATCCTTCGTGGTCGCCGCAGCTCTCCAGCTCCGACGCCGTCGCTCTCCACCACCTACACCCTCTCTGGAAAGTTACAAACACGTGGACATCATGGAAAATACATCAGAGGAATGGAAGTTTTTCCCAACAGAAACACAGATGGCATATATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.1

Weight (kDa)

8.57

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 3 cut(s) 106, 380, 415
AclWI GGATC 1 cut(s) 73
AcsI RAATTY 3 cut(s) 237, 281, 302
AcvI CACGTG 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 434
AflIII ACRYGT 2 cut(s) 316, 479
AgsI TTSAA 1 cut(s) 29
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 3 cut(s) 130, 420, 428
AluI AGCT 3 cut(s) 130, 420, 428
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 367
ApeKI GCWGC 3 cut(s) 127, 130, 417
ApoI RAATTY 3 cut(s) 237, 281, 302
Asp700I GAANNNNTTC 1 cut(s) 519
AspS9I GGNCC 2 cut(s) 99, 153
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 2 cut(s) 99, 153
BbrPI CACGTG 1 cut(s) 482
BbsI GAAGAC 3 cut(s) 2, 201, 313
BbvI GCAGC 3 cut(s) 117, 139, 429
BccI CCATC 1 cut(s) 533
BceAI ACGGC 2 cut(s) 93, 421
BciT130I CCWGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 380
BisI GCNGC 4 cut(s) 128, 131, 415, 418
BlsI GCNGC 4 cut(s) 129, 132, 416, 419
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 2 cut(s) 99, 153
BmeT110I CYCGRG 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 99, 153
BmiI GGNNCC 2 cut(s) 100, 101
BmrFI CCNGG 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 350
BmuI ACTGGG 1 cut(s) 350
BpiI GAAGAC 3 cut(s) 2, 201, 313
BpmI CTGGAG 1 cut(s) 408
BsaAI YACGTR 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 199, 356
BseAI TCCGGA 1 cut(s) 367
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 199, 356
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 3 cut(s) 117, 139, 429
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 368
BslFI GGGAC 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 112
Bso31I GGTCTC 1 cut(s) 380
BsoBI CYCGRG 1 cut(s) 95
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 3 cut(s) 106, 380, 415
BspEI TCCGGA 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 100, 101
BspPI GGATC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 199, 356
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 3 cut(s) 55, 175, 226
Bst6I CTCTTC 2 cut(s) 222, 331
BstACI GRCGYC 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 482
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 117, 139, 429
BstV2I GAAGAC 3 cut(s) 2, 201, 313
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BtrI CACGTC 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 99, 153
CseI GACGC 1 cut(s) 442
CviAII CATG 4 cut(s) 150, 273, 294, 491
CviJI RGCY 3 cut(s) 130, 420, 428
CviKI_1 RGCY 3 cut(s) 130, 420, 428
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 222, 331
EarI CTCTTC 2 cut(s) 222, 331
Eco130I CCWWGG 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 380
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 99, 153
Eco72I CACGTG 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 122
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 4 cut(s) 153, 276, 297, 494
FaiI YATR 9 cut(s) 20, 33, 151, 166, 274, 295, 492, 545, 547
FaqI GGGAC 1 cut(s) 112
FatI CATG 4 cut(s) 149, 272, 293, 490
FauI CCCGC 1 cut(s) 387
Fnu4HI GCNGC 4 cut(s) 128, 131, 415, 418
Fsp4HI GCNGC 4 cut(s) 128, 131, 415, 418
GluI GCNGC 4 cut(s) 128, 131, 415, 418
GsuI CTGGAG 1 cut(s) 408
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 442
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 4 cut(s) 153, 276, 297, 494
HinfI GANTC 3 cut(s) 7, 59, 371
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 137, 485
Hpy188I TCNGA 4 cut(s) 245, 265, 432, 506
Hpy188III TCNNGA 6 cut(s) 82, 97, 278, 299, 368, 465
Hpy8I GTNNAC 2 cut(s) 137, 485
Hpy99I CGWCG 3 cut(s) 114, 436, 442
HpyAV CCTTC 2 cut(s) 266, 413
HpyCH4III ACNGT 3 cut(s) 55, 175, 226
HpyCH4IV ACGT 2 cut(s) 318, 481
HpyCH4V TGCA 2 cut(s) 179, 349
HpySE526I ACGT 2 cut(s) 318, 481
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 4 cut(s) 153, 276, 297, 494
KflI GGGWCCC 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 367
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 433
Lsp1109I GCAGC 3 cut(s) 117, 139, 429
MaeII ACGT 2 cut(s) 318, 481
MaeIII GTNAC 1 cut(s) 471
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 7 cut(s) 5, 182, 201, 209, 313, 318, 353
MflI RGATCY 1 cut(s) 78
MluCI AATT 4 cut(s) 237, 281, 302, 344
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 4 cut(s) 225, 271, 470, 500
MroI TCCGGA 1 cut(s) 367
MroXI GAANNNNTTC 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
NdeII GATC 1 cut(s) 78
NlaIII CATG 4 cut(s) 153, 276, 297, 494
NlaIV GGNNCC 2 cut(s) 100, 101
PdmI GAANNNNTTC 1 cut(s) 519
PfeI GAWTC 2 cut(s) 59, 371
PflFI GACNNNGTC 1 cut(s) 436
PkrI GCNGC 4 cut(s) 129, 132, 416, 419
PleI GAGTC 1 cut(s) 15
PmaCI CACGTG 1 cut(s) 482
PmlI CACGTG 1 cut(s) 482
PpsI GAGTC 1 cut(s) 15
Ppu21I YACGTR 1 cut(s) 482
PpuMI RGGWCCY 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 122
PspCI CACGTG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 100, 101
PspPI GGNCC 2 cut(s) 99, 153
PspPPI RGGWCCY 1 cut(s) 99
PsuI RGATCY 1 cut(s) 78
PsyI GACNNNGTC 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 130
SatI GCNGC 4 cut(s) 128, 131, 415, 418
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 2 cut(s) 99, 153
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 124
SetI ASST 8 cut(s) 74, 132, 171, 321, 422, 430, 455, 484
SinI GGWCC 2 cut(s) 99, 153
Sse9I AATT 4 cut(s) 237, 281, 302, 344
SsiI CCGC 3 cut(s) 106, 380, 415
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 3 cut(s) 55, 175, 226
TaiI ACGT 2 cut(s) 321, 484
TaqI TCGA 2 cut(s) 57, 112
TasI AATT 4 cut(s) 237, 281, 302, 344
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 2 cut(s) 59, 371
TseI GCWGC 3 cut(s) 127, 130, 417
TspDTI ATGAA 1 cut(s) 282
Tth111I GACNNNGTC 1 cut(s) 436
VpaK11BI GGWCC 2 cut(s) 99, 153
XapI RAATTY 3 cut(s) 237, 281, 302
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 147
XmnI GAANNNNTTC 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.