RLG00000002091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002409
Physical Location & Seq
Reverse (-)
25289618 .. 25290991
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002091

Sequence Viewer

Length: 1029 bp
ATGGGCCTCACAAACGTTCAAGTTTTACGTGGAATTGGATTGGGCAATGACAAGAACACGAGGAAAAGCAAAAATTGCCGTTTCATAATACCTGACAAATTTGTGAACACGGTTAAACGGCTCCGCATTTCACACTTGAGGGCGGCTGCGGGTATCGATTTAGGGAATCTAGATCTAATTGGATGCACTATTGTATATGATGACGTTTGTAAGATGATGGTATGTAGTCTAGATCCCCTTAATGCGAAAGTAAACATACATGGCAACGAATTCAATATAAGACCGATTGATTTCTCGTGCATAATGGGGATACGTGATGGAGGTGAAGATGTGGAGTTAAGTAGTCCGGTCAATGATGTAAGGTTGCTAAATTTACGGAAGTATTTGGCATTCGGTCACGGGGAAGTCCACATTCACCATGTGCATAATTTGATGCTGGAAAGAAATGTCCCGGATAACACTTTCAATGTGGCATACGCACTGTATGCATTGTCCACTTTCTTGTGCCCTAATGGCTCCTATTTGATAGATCAATCTTTGGTCTTACCCCTTCTAGATACTGATAATATCAATAAAAAGAATTGGGCCACTTTTTGTTATAACAAGGTGATGGAGTCAGCAATGAGTATGTGGTCCACATCGTATAGGCAGGACTGTGCTTGCATGATATTTCTGCAGGTATTCTACTTTCAGGCGGTCGCTTTGGGATCGAAGTGGGTGGACAACCACATTACTCCTTTGCATGCATGGACAAAAAAGGAGGTCATGAAGTTGTTGCTTTGGGTGGAAAATCAAGGCTTTGAATGGCACGAGTATGAATCAAAGAGTAATCAATTCGTTGTGCCTCAAAAGACATCTGGACAACATAGTGCTGGGCCGAAACTGTTGGCCAATAACATGGAAGATGTTGAGGAGGACATGAATGGAATGCAAGCAAAATTTGTTGTCTTGGACAAAAGGGTTGCAGGTTTGGAACCCGCTGTTGTGAAGATAGCGAATGCGCTGAAGGACATGAAAACTACGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

343

Amino Acids

38.63

Weight (kDa)

7.15

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
Acc36I ACCTGC 2 cut(s) 667, 956
AciI CCGC 5 cut(s) 124, 143, 149, 695, 978
AclI AACGTT 1 cut(s) 15
AclWI GGATC 2 cut(s) 227, 715
AcoI YGGCCR 1 cut(s) 888
AcsI RAATTY 4 cut(s) 98, 269, 370, 938
AcuI CTGAAG 1 cut(s) 1025
AdeI CACNNNGTG 1 cut(s) 421
AgsI TTSAA 4 cut(s) 20, 274, 466, 803
AlwI GGATC 2 cut(s) 227, 715
AoxI GGCC 4 cut(s) 4, 585, 875, 888
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 4 cut(s) 98, 269, 370, 938
AspLEI GCGC 1 cut(s) 1003
AspS9I GGNCC 4 cut(s) 4, 585, 633, 875
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 3 cut(s) 335, 407, 619
AvaII GGWCC 1 cut(s) 633
BaeGI GKGCMC 1 cut(s) 509
BalI TGGCCA 1 cut(s) 890
BauI CACGAG 3 cut(s) 58, 295, 809
BbvI GCAGC 1 cut(s) 133
BccI CCATC 3 cut(s) 211, 311, 604
BceAI ACGGC 2 cut(s) 63, 134
BciVI GTATCC 1 cut(s) 303
BcnI CCSGG 1 cut(s) 452
BfaI CTAG 3 cut(s) 170, 230, 554
BfmI CTRYAG 1 cut(s) 674
BfuAI ACCTGC 2 cut(s) 667, 956
BfuI GTATCC 1 cut(s) 303
BglI GCCNNNNNGGC 1 cut(s) 513
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 144, 147
BlsI GCNGC 2 cut(s) 145, 148
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 1 cut(s) 633
BmgT120I GGNCC 4 cut(s) 4, 585, 633, 875
BmiI GGNNCC 3 cut(s) 122, 517, 975
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 2 cut(s) 173, 423
BpuEI CTTGAG 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 452
Bsa29I ATCGAT 1 cut(s) 156
BsaAI YACGTR 2 cut(s) 29, 314
BsaWI WCCGGW 1 cut(s) 346
Bse3DI GCAATG 2 cut(s) 52, 627
BseCI ATCGAT 1 cut(s) 156
BseGI GGATG 1 cut(s) 188
BseMI GCAATG 2 cut(s) 52, 627
BseRI GAGGAG 1 cut(s) 926
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 872
Bsh1285I CGRYCG 1 cut(s) 699
BshFI GGCC 4 cut(s) 6, 587, 877, 890
BshVI ATCGAT 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 699
BsiSI CCGG 2 cut(s) 347, 452
BslFI GGGAC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 3 cut(s) 389, 933, 1003
BsnI GGCC 4 cut(s) 6, 587, 877, 890
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 4 cut(s) 172, 232, 529, 707
BspACI CCGC 5 cut(s) 124, 143, 149, 695, 978
BspANI GGCC 4 cut(s) 6, 587, 877, 890
BspDI ATCGAT 1 cut(s) 156
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 3 cut(s) 122, 517, 975
BspMAI CTGCAG 1 cut(s) 678
BspMI ACCTGC 2 cut(s) 667, 956
BspPI GGATC 2 cut(s) 227, 715
BsrDI GCAATG 2 cut(s) 52, 627
BssMI GATC 4 cut(s) 172, 232, 529, 707
BssSI CACGAG 3 cut(s) 58, 295, 809
Bst2BI CACGAG 3 cut(s) 58, 295, 809
Bst4CI ACNGT 4 cut(s) 112, 483, 656, 885
BstAPI GCANNNNNTGC 2 cut(s) 75, 485
BstBAI YACGTR 2 cut(s) 29, 314
BstC8I GCNNGC 3 cut(s) 661, 744, 933
BstF5I GGATG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 1003
BstKTI GATC 4 cut(s) 175, 235, 532, 710
BstMBI GATC 4 cut(s) 172, 232, 529, 707
BstMCI CGRYCG 1 cut(s) 699
BstMWI GCNNNNNNNGC 3 cut(s) 75, 485, 513
BstNSI RCATGY 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 674
BstSLI GKGCMC 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 172, 232
BstXI CCANNNNNNTGG 1 cut(s) 898
BstYI RGATCY 2 cut(s) 172, 232
Bsu15I ATCGAT 1 cut(s) 156
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 4 cut(s) 6, 587, 877, 890
BsuTUI ATCGAT 1 cut(s) 156
BtsCI GGATG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 479
BveI ACCTGC 2 cut(s) 667, 956
Cac8I GCNNGC 3 cut(s) 661, 744, 933
CciI TCATGA 1 cut(s) 765
CfoI GCGC 1 cut(s) 1003
Cfr13I GGNCC 4 cut(s) 4, 585, 633, 875
ClaI ATCGAT 1 cut(s) 156
CviAII CATG 9 cut(s) 260, 419, 664, 743, 747, 766, 898, 919, 1012
CviJI RGCY 8 cut(s) 6, 121, 146, 516, 587, 798, 877, 890
CviKI_1 RGCY 8 cut(s) 6, 121, 146, 516, 587, 798, 877, 890
DpnI GATC 4 cut(s) 174, 234, 531, 709
DpnII GATC 4 cut(s) 172, 232, 529, 707
DraIII CACNNNGTG 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 888
Eco47I GGWCC 1 cut(s) 633
Eco57I CTGAAG 1 cut(s) 1025
EcoRI GAATTC 1 cut(s) 269
EcoT22I ATGCAT 2 cut(s) 490, 748
FaeI CATG 9 cut(s) 263, 422, 667, 746, 750, 769, 901, 922, 1015
FaqI GGGAC 1 cut(s) 434
FatI CATG 9 cut(s) 259, 418, 663, 742, 746, 765, 897, 918, 1011
FauI CCCGC 2 cut(s) 142, 985
Fnu4HI GCNGC 2 cut(s) 144, 147
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 144, 147
FspBI CTAG 3 cut(s) 170, 230, 554
GlaI GCGC 1 cut(s) 1002
GluI GCNGC 2 cut(s) 144, 147
GsaI CCCAGC 1 cut(s) 876
HaeIII GGCC 4 cut(s) 6, 587, 877, 890
HapII CCGG 2 cut(s) 347, 452
HhaI GCGC 1 cut(s) 1003
Hin1II CATG 9 cut(s) 263, 422, 667, 746, 750, 769, 901, 922, 1015
Hin6I GCGC 1 cut(s) 1001
HinP1I GCGC 1 cut(s) 1001
HinfI GANTC 3 cut(s) 166, 614, 818
HpaII CCGG 2 cut(s) 347, 452
HphI GGTGA 3 cut(s) 335, 407, 619
Hpy166II GTNNAC 6 cut(s) 106, 253, 409, 495, 636, 721
Hpy188III TCNNGA 5 cut(s) 170, 230, 554, 766, 858
Hpy8I GTNNAC 6 cut(s) 106, 253, 409, 495, 636, 721
HpyAV CCTTC 2 cut(s) 560, 1000
HpyCH4III ACNGT 4 cut(s) 112, 483, 656, 885
HpyCH4IV ACGT 5 cut(s) 15, 28, 204, 313, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 485, 513
HpySE526I ACGT 5 cut(s) 15, 28, 204, 313, 1022
Hsp92II CATG 9 cut(s) 263, 422, 667, 746, 750, 769, 901, 922, 1015
HspAI GCGC 1 cut(s) 1001
Kzo9I GATC 4 cut(s) 172, 232, 529, 707
LmnI GCTCC 2 cut(s) 126, 521
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 2 cut(s) 173, 423
MaeI CTAG 3 cut(s) 170, 230, 554
MaeII ACGT 5 cut(s) 15, 28, 204, 313, 1022
MaeIII GTNAC 1 cut(s) 395
MalI GATC 4 cut(s) 174, 234, 531, 709
MboI GATC 4 cut(s) 172, 232, 529, 707
MboII GAAGA 3 cut(s) 338, 914, 1000
MflI RGATCY 2 cut(s) 172, 232
MhlI GDGCHC 1 cut(s) 509
MlsI TGGCCA 1 cut(s) 890
MluNI TGGCCA 1 cut(s) 890
MlyI GAGTC 1 cut(s) 623
MnlI CCTC 8 cut(s) 17, 54, 132, 314, 754, 855, 904, 907
Mox20I TGGCCA 1 cut(s) 890
Mph1103I ATGCAT 2 cut(s) 490, 748
MscI TGGCCA 1 cut(s) 890
MseI TTAA 3 cut(s) 114, 240, 338
MslI CAYNNNNRTG 1 cut(s) 813
Msp20I TGGCCA 1 cut(s) 890
MspA1I CMGCKG 1 cut(s) 980
MspI CCGG 2 cut(s) 347, 452
MspR9I CCNGG 1 cut(s) 452
Mva1269I GAATGC 3 cut(s) 389, 933, 1003
MwoI GCNNNNNNNGC 3 cut(s) 75, 485, 513
NciI CCSGG 1 cut(s) 452
NdeII GATC 4 cut(s) 172, 232, 529, 707
NlaIII CATG 9 cut(s) 263, 422, 667, 746, 750, 769, 901, 922, 1015
NlaIV GGNNCC 3 cut(s) 122, 517, 975
NmuCI GTSAC 1 cut(s) 395
NsiI ATGCAT 2 cut(s) 490, 748
NspI RCATGY 1 cut(s) 746
PaeI GCATGC 1 cut(s) 746
PagI TCATGA 1 cut(s) 765
PctI GAATGC 3 cut(s) 389, 933, 1003
PfeI GAWTC 2 cut(s) 166, 818
PfoI TCCNGGA 1 cut(s) 450
PkrI GCNGC 2 cut(s) 145, 148
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
Ppu21I YACGTR 2 cut(s) 29, 314
PsiI TTATAA 1 cut(s) 600
Psp1406I AACGTT 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 872
PspN4I GGNNCC 3 cut(s) 122, 517, 975
PspPI GGNCC 4 cut(s) 4, 585, 633, 875
PstI CTGCAG 1 cut(s) 678
PsuI RGATCY 2 cut(s) 172, 232
RseI CAYNNNNRTG 1 cut(s) 813
SaqAI TTAA 3 cut(s) 114, 240, 338
SatI GCNGC 2 cut(s) 144, 147
Sau3AI GATC 4 cut(s) 172, 232, 529, 707
Sau96I GGNCC 4 cut(s) 4, 585, 633, 875
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 1 cut(s) 509
SfaNI GCATC 2 cut(s) 173, 423
SfcI CTRYAG 1 cut(s) 674
SinI GGWCC 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 813
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
SphI GCATGC 1 cut(s) 746
SsiI CCGC 5 cut(s) 124, 143, 149, 695, 978
SspMI CTAG 3 cut(s) 170, 230, 554
StyD4I CCNGG 1 cut(s) 450
TaaI ACNGT 4 cut(s) 112, 483, 656, 885
TaiI ACGT 5 cut(s) 18, 31, 207, 316, 1025
TaqI TCGA 2 cut(s) 156, 710
TaqII GACCGA 2 cut(s) 298, 383
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 2 cut(s) 166, 818
Tru1I TTAA 3 cut(s) 114, 240, 338
Tru9I TTAA 3 cut(s) 114, 240, 338
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 5 cut(s) 73, 782, 831, 935, 1028
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 633
XapI RAATTY 4 cut(s) 98, 269, 370, 938
XbaI TCTAGA 3 cut(s) 169, 229, 553
XceI RCATGY 1 cut(s) 746
XspI CTAG 3 cut(s) 170, 230, 554
Zsp2I ATGCAT 2 cut(s) 490, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.