Rroxscaffold_7G00197870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002409
Physical Location & Seq
Forward (+)
42495079 .. 42499339
4261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197870.1

Sequence Viewer

Length: 408 bp
ATGGGGATACGTGATGGAGGTGAAGATGTGGAGTTAAGTAGTTCAATCAATGATGTAAGGGTGCTAAGTATACCGAAGTATTTGCCACTCGGTCATCGGGAAGTCCACATTCACCATGTGAAGAATTTGATGCTGGAAATAAACATCCCGGATGACACTTTCAAGCACTTAAATATTAGAACTGAAAAGCTGATTGTTTGTGGTTTTGTGTTTGCAGATAATGGGACCTTTGACATGAAGACCTTCTTCTCAAGCACTAGCAGTGGCCAAAAGAATGAGAGAAATCCAGCTACGGATAAGGATGGAAAACTATGGATGGATGTGGGAGAGAGGAAGCATGAGAGAAGAAGAGTGCTAGAGAGCTTGCTAGCACACCCCGTTCGATCCCTCCTCATTTGGTTACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.53

Weight (kDa)

7.96

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 70
AclWI GGATC 1 cut(s) 378
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 124
AdeI CACNNNGTG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 45, 163
AluBI AGCT 3 cut(s) 190, 290, 363
AluI AGCT 3 cut(s) 190, 290, 363
AlwI GGATC 1 cut(s) 378
AoxI GGCC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 32, 104
AsuNHI GCTAGC 1 cut(s) 367
AvaII GGWCC 1 cut(s) 225
BalI TGGCCA 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 245
BccI CCATC 3 cut(s) 8, 296, 310
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BcnI CCSGG 1 cut(s) 149
BfaI CTAG 3 cut(s) 258, 356, 368
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 120
BmtI GCTAGC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 11
BseGI GGATG 5 cut(s) 144, 157, 307, 321, 325
BseRI GAGGAG 1 cut(s) 380
BshFI GGCC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 383
BspANI GGCC 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 371
BspPI GGATC 1 cut(s) 378
BssMI GATC 1 cut(s) 383
BssNAI GTATAC 1 cut(s) 71
Bst1107I GTATAC 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 343
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 365, 369
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 5 cut(s) 144, 157, 307, 321, 325
BstKTI GATC 1 cut(s) 386
BstMBI GATC 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 245
BstZ17I GTATAC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 5 cut(s) 144, 157, 307, 321, 325
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 365, 369
Cfr13I GGNCC 1 cut(s) 225
CviAII CATG 3 cut(s) 116, 235, 338
CviJI RGCY 4 cut(s) 190, 267, 290, 363
CviKI_1 RGCY 4 cut(s) 190, 267, 290, 363
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 385
DpnII GATC 1 cut(s) 383
DraIII CACNNNGTG 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 225
FaeI CATG 3 cut(s) 119, 238, 341
FaiI YATR 5 cut(s) 71, 117, 236, 313, 339
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 1 cut(s) 238
FatI CATG 3 cut(s) 115, 234, 337
FblI GTMKAC 1 cut(s) 70
FokI GGATG 5 cut(s) 131, 164, 314, 328, 332
FspBI CTAG 3 cut(s) 258, 356, 368
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 149
Hin1II CATG 3 cut(s) 119, 238, 341
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 32, 104
Hpy166II GTNNAC 2 cut(s) 71, 106
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 2 cut(s) 71, 106
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 3 cut(s) 119, 238, 341
Kzo9I GATC 1 cut(s) 383
LpnPI CCDG 3 cut(s) 119, 162, 300
LweI GCATC 1 cut(s) 120
MaeI CTAG 3 cut(s) 258, 356, 368
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 399
MalI GATC 1 cut(s) 385
MboI GATC 1 cut(s) 383
MboII GAAGA 6 cut(s) 35, 133, 238, 250, 357, 360
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 1 cut(s) 124
MluNI TGGCCA 1 cut(s) 267
MnlI CCTC 4 cut(s) 11, 324, 398, 401
Mox20I TGGCCA 1 cut(s) 267
MroXI GAANNNNTTC 1 cut(s) 242
MscI TGGCCA 1 cut(s) 267
MseI TTAA 2 cut(s) 35, 170
Msp20I TGGCCA 1 cut(s) 267
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 149
NciI CCSGG 1 cut(s) 149
NdeII GATC 1 cut(s) 383
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 3 cut(s) 119, 238, 341
NlaIV GGNNCC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 242
PfoI TCCNGGA 1 cut(s) 147
Ppu21I YACGTR 1 cut(s) 11
PpuMI RGGWCCY 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 225
PspPPI RGGWCCY 1 cut(s) 225
SaqAI TTAA 2 cut(s) 35, 170
Sau3AI GATC 1 cut(s) 383
Sau96I GGNCC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 149
SetI ASST 7 cut(s) 13, 22, 192, 230, 245, 292, 365
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 124
SspI AATATT 1 cut(s) 175
SspMI CTAG 3 cut(s) 258, 356, 368
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 405
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 382
TaqII GACCGA 1 cut(s) 80
TasI AATT 1 cut(s) 124
Tru1I TTAA 2 cut(s) 35, 170
Tru9I TTAA 2 cut(s) 35, 170
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 251
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 3 cut(s) 258, 356, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.