Rh6BG101400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002409
Physical Location & Seq
Reverse (-)
15837568 .. 15838310
743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG101400.1

Sequence Viewer

Length: 594 bp
ATGGTTGCATGGAACACTACTTTAGTGAAGAAATTGATTAGGTGGGTGGAACAAAATGGGGGAGTCACCAACACAAACCAGAATGTTTGGAGGAGACAACCTATAATCCATGAGAAGGAGTCTGATGCAAAACAAATATTGTTGAGTGTAGAAGGCCTGCATAAAAGGGTTTCTAATATGGAACAAAAAGAAAGTCGACTGACAGAATCAATGGAGAGAATGGAGAGGATGCTAGGCTCATTCCAAGGGGCAACAATTAAACATATCGTTGGAGAGGTGTTGGTTCGTTTAGAACAGCGAGATGAAGGCAAGCATGGGGAGTGCCAAGATCAATTTAAGTTCAGAGCCGACCTTAATGAGCATGAATTCAGAGGCTCAGAGGCACAGTCTAATGATCCATCAAGACTATTGAAGGGCAAAAATATTTGCATGAACCCCCTGCCAGACAAGGTTTGCATGGCTAGAAAGATGAATCCCCCACTCAAAGTCCAATCAAAATGTTCATTTAGCCCAGATGGTCCTCCGAAGCCGGCTAAGCGATCAATAAAGGAAAAGAAACTAAGGGGTGTCGGGGTGCAGTCAATGCATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.57

Weight (kDa)

9.69

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 196
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 1 cut(s) 389
AoxI GGCC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 365
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AspS9I GGNCC 1 cut(s) 518
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 518
BccI CCATC 2 cut(s) 406, 509
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 233, 462
BlpI GCTNAGC 1 cut(s) 534
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 518
BmsI GCATC 2 cut(s) 115, 219
Bpu1102I GCTNAGC 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 529
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 106
BshFI GGCC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 530
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 88
BsnI GGCC 1 cut(s) 156
Bsp143I GATC 3 cut(s) 328, 394, 539
Bsp1720I GCTNAGC 1 cut(s) 534
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 389
BspPI GGATC 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 529
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 3 cut(s) 328, 394, 539
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 583
BstC8I GCNNGC 3 cut(s) 158, 311, 531
BstDEI CTNAG 3 cut(s) 376, 534, 560
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 3 cut(s) 331, 397, 542
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 3 cut(s) 328, 394, 539
BstMWI GCNNNNNNNGC 2 cut(s) 535, 583
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 158, 311, 531
Cfr10I RCCGGY 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 518
CviAII CATG 6 cut(s) 9, 110, 314, 362, 430, 457
CviJI RGCY 8 cut(s) 156, 237, 347, 375, 461, 510, 529, 533
CviKI_1 RGCY 8 cut(s) 156, 237, 347, 375, 461, 510, 529, 533
DdeI CTNAG 3 cut(s) 376, 534, 560
DpnI GATC 3 cut(s) 330, 396, 541
DpnII GATC 3 cut(s) 328, 394, 539
Eco130I CCWWGG 1 cut(s) 244
Eco147I AGGCCT 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 518
EcoRI GAATTC 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 6 cut(s) 12, 113, 317, 365, 433, 460
FatI CATG 6 cut(s) 8, 109, 313, 361, 429, 456
FblI GTMKAC 1 cut(s) 196
FokI GGATG 1 cut(s) 241
FspBI CTAG 2 cut(s) 233, 462
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 530
Hin1II CATG 6 cut(s) 12, 113, 317, 365, 433, 460
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HinfI GANTC 4 cut(s) 63, 119, 206, 472
HpaII CCGG 1 cut(s) 530
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 5 cut(s) 124, 344, 371, 379, 525
Hpy188III TCNNGA 1 cut(s) 402
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 4 cut(s) 109, 146, 299, 406
HpyCH4III ACNGT 1 cut(s) 387
HpyCH4V TGCA 7 cut(s) 8, 128, 160, 429, 456, 577, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 535, 583
HpyF3I CTNAG 3 cut(s) 376, 534, 560
Hsp92II CATG 6 cut(s) 12, 113, 317, 365, 433, 460
KroI GCCGGC 1 cut(s) 529
KroNI GCCGGC 1 cut(s) 531
Kzo9I GATC 3 cut(s) 328, 394, 539
LpnPI CCDG 6 cut(s) 92, 170, 452, 456, 525, 543
LweI GCATC 2 cut(s) 115, 219
MaeI CTAG 2 cut(s) 233, 462
MaeIII GTNAC 1 cut(s) 64
MalI GATC 3 cut(s) 330, 396, 541
MboI GATC 3 cut(s) 328, 394, 539
MboII GAAGA 1 cut(s) 40
MluCI AATT 4 cut(s) 32, 255, 332, 365
MlyI GAGTC 2 cut(s) 72, 128
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 6 cut(s) 84, 219, 268, 365, 373, 531
Mph1103I ATGCAT 1 cut(s) 588
MroNI GCCGGC 1 cut(s) 529
MseI TTAA 3 cut(s) 258, 336, 354
MspI CCGG 1 cut(s) 530
MwoI GCNNNNNNNGC 2 cut(s) 535, 583
NaeI GCCGGC 1 cut(s) 531
NdeII GATC 3 cut(s) 328, 394, 539
NgoMIV GCCGGC 1 cut(s) 529
NlaIII CATG 6 cut(s) 12, 113, 317, 365, 433, 460
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 588
PceI AGGCCT 1 cut(s) 156
PdiI GCCGGC 1 cut(s) 531
PfeI GAWTC 2 cut(s) 206, 472
PleI GAGTC 2 cut(s) 71, 127
PpsI GAGTC 2 cut(s) 71, 127
PspPI GGNCC 1 cut(s) 518
SalI GTCGAC 1 cut(s) 195
SaqAI TTAA 3 cut(s) 258, 336, 354
Sau3AI GATC 3 cut(s) 328, 394, 539
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 2 cut(s) 72, 128
SetI ASST 5 cut(s) 44, 103, 279, 354, 453
SfaNI GCATC 2 cut(s) 115, 219
SinI GGWCC 1 cut(s) 518
Sse9I AATT 4 cut(s) 32, 255, 332, 365
SseBI AGGCCT 1 cut(s) 156
SspI AATATT 2 cut(s) 138, 424
SspMI CTAG 2 cut(s) 233, 462
StuI AGGCCT 1 cut(s) 156
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 196
TasI AATT 4 cut(s) 32, 255, 332, 365
TfiI GAWTC 2 cut(s) 206, 472
Tru1I TTAA 3 cut(s) 258, 336, 354
Tru9I TTAA 3 cut(s) 258, 336, 354
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 5 cut(s) 318, 378, 446, 485, 492
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 196
XspI CTAG 2 cut(s) 233, 462
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.