Rh4BG133300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002409
Physical Location & Seq
Forward (+)
22411487 .. 22413023
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG133300.1

Sequence Viewer

Length: 498 bp
ATGGTAAACCGGGATACATCTGACACAGTTGTAGAAATGTTGAAGTTTGTGTTTATGCCGAGGCTACTAACTGTGAAGATGGCACGGTACGATACTGCTAATGTTGCAAGGTATGACTATGGTAGCTTGCATCGGGACGACCTTGAAGTTTCTCTTGCACCAGACGGACTAGTTTGCAGCCATATATTTATTCCATTGCGTGATCCAGCTGGGATTGGACATTGGTATATGTTGATGGTTAAACCTAAAGCTAAAACTGCTGAGATAGTTGATAGCTACCCTGAAAAAGATGCGGAAGCAAGGAGGAAACAATGGGCTACTAATGCGTATGTGTCGGAAGACCACAGAGCTTCCCTTGTTATGGAATGTATAGGGAACAACCGAAACGAGGTCGACAATTTGGAGGAAATGATGGTGGAATGCTTGCACAATCTTGAGCAACTACCAATTCTGCAGTTAGACGAAAGGAATGAAGGAGGAATGGGGAAACCGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.87

Weight (kDa)

5.11

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 393
AciI CCGC 1 cut(s) 293
AclWI GGATC 1 cut(s) 197
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 361, 388
AgsI TTSAA 2 cut(s) 43, 146
AhlI ACTAGT 1 cut(s) 169
AluBI AGCT 5 cut(s) 126, 209, 251, 276, 350
AluI AGCT 5 cut(s) 126, 209, 251, 276, 350
AlwI GGATC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 177
AsuC2I CCSGG 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 189
BccI CCATC 3 cut(s) 73, 229, 406
BciVI GTATCC 1 cut(s) 7
BcnI CCSGG 1 cut(s) 11
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 452
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 2 cut(s) 139, 280
BpiI GAAGAC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 388
Bse3DI GCAATG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 2 cut(s) 361, 388
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 361, 388
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 425
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 456
BspPI GGATC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 3 cut(s) 28, 73, 87
BstC8I GCNNGC 2 cut(s) 128, 425
BstDEI CTNAG 1 cut(s) 261
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 104, 257, 323
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 345
BsuI GTATCC 1 cut(s) 7
Cac8I GCNNGC 2 cut(s) 128, 425
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 8 cut(s) 64, 126, 180, 209, 251, 276, 317, 350
CviKI_1 RGCY 8 cut(s) 64, 126, 180, 209, 251, 276, 317, 350
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 261
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 1 cut(s) 149
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 178
GsaI CCCAGC 1 cut(s) 213
HapII CCGG 1 cut(s) 10
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HpaII CCGG 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 7, 394
Hpy188I TCNGA 2 cut(s) 22, 337
Hpy188III TCNNGA 2 cut(s) 134, 434
Hpy8I GTNNAC 2 cut(s) 7, 394
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 3 cut(s) 28, 73, 87
HpyCH4V TGCA 6 cut(s) 107, 130, 158, 177, 427, 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 257, 323
HpyF3I CTNAG 1 cut(s) 261
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 23, 174, 195, 219, 294
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 2 cut(s) 139, 280
MaeI CTAG 1 cut(s) 170
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 88, 350
MluCI AATT 3 cut(s) 397, 447, 493
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 5 cut(s) 54, 297, 382, 397, 470
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 425
MwoI GCNNNNNNNGC 3 cut(s) 104, 257, 323
NciI CCSGG 1 cut(s) 11
NdeII GATC 1 cut(s) 202
NmeAIII GCCGAG 1 cut(s) 84
PctI GAATGC 1 cut(s) 425
PkrI GCNGC 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 209
PstI CTGCAG 1 cut(s) 456
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 11
SetI ASST 9 cut(s) 113, 128, 144, 211, 247, 253, 278, 352, 393
SfaNI GCATC 2 cut(s) 139, 280
SfcI CTRYAG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SpeI ACTAGT 1 cut(s) 169
Sse9I AATT 3 cut(s) 397, 447, 493
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 3 cut(s) 28, 73, 87
TaqI TCGA 1 cut(s) 393
TasI AATT 3 cut(s) 397, 447, 493
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 486
TspGWI ACGGA 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.