Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002409

Physical Location & Seq

Genomic Coordinates Reverse (-)

34658616 .. 34660822

Gene Structure 2207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG156600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGAACAAAAAGAAAGTCGGCTGACAGAATCAATGGAGAGAATGGAGAGGATGCTAGGCTCATTCCAAGGGGCAACAATTAAACATATTGTTGGAGAGGTGTTGGCTCGTTTAGAACAGCGAGATGAGGGCAAGCATGGGGAGTGCCAAGATCAATTTAAGTTCAGAGCGGACCTTAATGTGCATGAATTCAGAGGCTCAGAGGCACAGTCTAATGATCCATCAAGACTATTGAAAGGCAAAAATATTTGCATGAACCCCCTGCCAGACGAGGTTTGCATGGGTAGAAAGATGAATCCCCCGCTCAAAGTCCAATCAAAATGTTCATTTAGCCCAGATGGTCCTCCGAAGCCGGCTAAGCGATCAATAAAGGAAAAGAAACTAAGGGGTGTCGGGGTGCAGTCAATGCATATACGGAAGGCTCTTTTCAGAACACGAGGAAGAACATATGGCAAGCAAACAAGAGTGGAACTGAAGGATGATGAAAAACAAGAGGAACAAGGTCTTCGTTGCCTATTCAACGTCAAAGCAAATACTCCAAAGGAGGACATTGAGTTGCTGACTTTCATTGGGTTTAGTAAGAAGCCACTTACAAATCTTCAAATGAGATATTACAATGTCACAGTAGCTAAACATGGGGGAGTGATTGTATCAAGAGCCGACATGCAATGCCTACTGCCTGGTCAACTTTTGAGCGACTATGTCATCAACATGTTTGCAAGCTACCTTAATGAAGATGGGTTTGGGGATTGGTACTTCCCAACCTATTTTGGTGCAAGCTCTAATGTGAAAAATATTCAGATGACCAGAATGGAATGGATTGAACACACCTGTCGCGTTAGCATGTTGGATAGATTCAAGGGGAAATTCAGGATGTGCAGAAGGATATACATTCCTTTGCGCGATCCTGCATCTGAGGGGCATTGGTATTTGTTGGTGGTGCACAAAGACTCCAGATTTGGGGAAATCGTTGACAGTGCACCTGATGATGATAGGACTTCATTCCGTGAGGAAGTTGCAAGAATGGCGATGAAGATGCTAGACAGTGTTTTTGGTGATGATATTAGGGAGGAAATGGGACTGCTACCTCATTTTACTGATCTTCCATTCATGGATAAGCACAACCACCCGGTTCAAAGAAACTCGTTCGACTGTGGTGTGTTTGTAATAAGAAACATGCAGCATTATGGCACACAATGGAATGAGGATTATGTTTCAGATGAGCACCGCGCAAATTTGGTCCTTGAGTGTGTCAATCACCCTCGCAATAAGGTGGAAAATGTAAGAGAAATGGTGGCAGATTGTTTGTCGCAACGAGGGGGAGATGCGGTAGATGGAAACAAGCATGAATTTTGTAATCTGTGTTCAAGTTGCACATCTGACCTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

463

Amino Acids

53.43

Weight (kDa)

7.88

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	289 - 403	6.5e-10	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002409)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002091 RLG00000004454 RLG00000033140 RLG00000033141 RLG00000033142
rosa_multiflora	Rmu_sc0000077.1_g000043 Rmu_sc0000361.1_g000004 Rmu_sc0002048.1_g000017 Rmu_sc0007180.1_g000005 Rmu_sc0007223.1_g000007 Rmu_sc0008769.1_g000009
rosa_roxburghii	Rroxscaffold_2G00118160 Rroxscaffold_2G00118170 Rroxscaffold_2G00125280 Rroxscaffold_3G00237010 Rroxscaffold_5G00349960 Rroxscaffold_5G00349970 Rroxscaffold_5G00362900 Rroxscaffold_7G00197790 Rroxscaffold_7G00197870
rosa_rugosa	Rorug07G0208000
rosa_samantha	Rh1BG098800 Rh1CG156600 Rh2DG571500 Rh4AG336300 Rh4BG133300 Rh4BG219500 Rh4DG120500 Rh4DG338800 Rh5DG299800 Rh6AG195900 Rh6BG101300 Rh6BG101400 Rh6BG101500 Rh6CG173400 Rh6CG200800 Rh7AG275000 Rh7DG346800
rosa_wichuraiana	Rw4G010230 Rw5G035120 Rw6G007570 Rw6G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	170, 304
AccII	CGCG	3 cut(s)	837, 903, 1230
AciI	CCGC	4 cut(s)	170, 302, 1228, 1328
AclWI	GGATC	2 cut(s)	212, 899
AcsI	RAATTY	4 cut(s)	188, 866, 1234, 1349
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	755
AfiI	CCNNNNNNNGG	1 cut(s)	960
AflIII	ACRYGT	1 cut(s)	711
AgsI	TTSAA	7 cut(s)	235, 520, 602, 824, 859, 1136, 1368
AjnI	CCWGG	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
AluBI	AGCT	3 cut(s)	629, 723, 780
AluI	AGCT	3 cut(s)	629, 723, 780
Alw21I	GWGCWC	3 cut(s)	945, 982, 1227
Alw44I	GTGCAC	2 cut(s)	941, 978
AlwI	GGATC	2 cut(s)	212, 899
ApaLI	GTGCAC	2 cut(s)	941, 978
ApeKI	GCWGC	1 cut(s)	1180
ApoI	RAATTY	4 cut(s)	188, 866, 1234, 1349
ArsI	GACNNNNNNTTYG	5 cut(s)	33, 941, 973, 1034, 1066
AspLEI	GCGC	2 cut(s)	903, 1232
AspS9I	GGNCC	3 cut(s)	172, 341, 1240
AsuC2I	CCSGG	1 cut(s)	1130
AsuHPI	GGTGA	2 cut(s)	1067, 1250
AvaII	GGWCC	3 cut(s)	172, 341, 1240
BaeGI	GKGCMC	2 cut(s)	945, 982
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	3 cut(s)	945, 982, 1227
BbvI	GCAGC	1 cut(s)	1192
BccI	CCATC	4 cut(s)	229, 332, 731, 1328
BcgI	CGANNNNNNTGC	2 cut(s)	1018, 1052
BciT130I	CCWGG	1 cut(s)	681
BcnI	CCSGG	1 cut(s)	1130
BfaI	CTAG	2 cut(s)	56, 1040
BfmI	CTRYAG	1 cut(s)	1385
BisI	GCNGC	1 cut(s)	1181
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	1182
Bme1390I	CCNGG	2 cut(s)	681, 1130
Bme18I	GGWCC	3 cut(s)	172, 341, 1240
BmgT120I	GGNCC	3 cut(s)	172, 341, 1240
BmrFI	CCNGG	2 cut(s)	681, 1130
BmsI	GCATC	4 cut(s)	42, 920, 1026, 1315
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	937
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	1265
BpuMI	CCSGG	1 cut(s)	1130
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	6 cut(s)	633, 663, 935, 965, 1314, 1344
Bsc4I	CCNNNNNNNGG	1 cut(s)	960
Bse118I	RCCGGY	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	3 cut(s)	57, 484, 879
BseLI	CCNNNNNNNGG	1 cut(s)	960
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	2 cut(s)	213, 906
BseSI	GKGCMC	2 cut(s)	945, 982
BseXI	GCAGC	1 cut(s)	1192
BsgI	GTGCAG	2 cut(s)	419, 898
Bsh1236I	CGCG	3 cut(s)	837, 903, 1230
BsiHKAI	GWGCWC	3 cut(s)	945, 982, 1227
BsiSI	CCGG	2 cut(s)	353, 1130
BslFI	GGGAC	1 cut(s)	1092
BslI	CCNNNNNNNGG	1 cut(s)	960
BsmFI	GGGAC	1 cut(s)	1092
Bsp1286I	GDGCHC	3 cut(s)	945, 982, 1227
Bsp143I	GATC	5 cut(s)	151, 217, 362, 904, 1099
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	4 cut(s)	170, 302, 1228, 1328
BspCNI	CTCAG	2 cut(s)	212, 907
BspFNI	CGCG	3 cut(s)	837, 903, 1230
BspMAI	CTGCAG	1 cut(s)	1389
BspPI	GGATC	2 cut(s)	212, 899
BsrBI	CCGCTC	2 cut(s)	170, 304
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	5 cut(s)	151, 217, 362, 904, 1099
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	5 cut(s)	210, 625, 977, 1046, 1154
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstC8I	GCNNGC	5 cut(s)	134, 354, 455, 721, 778
BstDEI	CTNAG	4 cut(s)	199, 357, 383, 915
BstF5I	GGATG	3 cut(s)	57, 484, 879
BstFNI	CGCG	3 cut(s)	837, 903, 1230
BstHHI	GCGC	2 cut(s)	903, 1232
BstKTI	GATC	5 cut(s)	154, 220, 365, 907, 1102
BstMBI	GATC	5 cut(s)	151, 217, 362, 904, 1099
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 406, 1025
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	4 cut(s)	667, 715, 847, 1180
BstSCI	CCNGG	2 cut(s)	679, 1128
BstSFI	CTRYAG	1 cut(s)	1385
BstSLI	GKGCMC	2 cut(s)	945, 982
BstUI	CGCG	3 cut(s)	837, 903, 1230
BstV1I	GCAGC	1 cut(s)	1192
BstV2I	GAAGAC	1 cut(s)	497
BtgZI	GCGATG	1 cut(s)	1043
BtsCI	GGATG	3 cut(s)	57, 484, 879
BtsIMutI	CAGTG	2 cut(s)	982, 1051
Cac8I	GCNNGC	5 cut(s)	134, 354, 455, 721, 778
CfoI	GCGC	2 cut(s)	903, 1232
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	172, 341, 1240
Csp6I	GTAC	1 cut(s)	754
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	4 cut(s)	199, 357, 383, 915
DpnI	GATC	5 cut(s)	153, 219, 364, 906, 1101
DpnII	GATC	5 cut(s)	151, 217, 362, 904, 1099
Eco130I	CCWWGG	1 cut(s)	67
Eco47I	GGWCC	3 cut(s)	172, 341, 1240
Eco57I	CTGAAG	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	67
FaqI	GGGAC	1 cut(s)	1092
FauI	CCCGC	1 cut(s)	309
FauNDI	CATATG	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	1181
FokI	GGATG	3 cut(s)	64, 491, 886
Fsp4HI	GCNGC	1 cut(s)	1181
FspBI	CTAG	2 cut(s)	56, 1040
GlaI	GCGC	2 cut(s)	902, 1231
GluI	GCNGC	1 cut(s)	1181
GsuI	CTGGAG	1 cut(s)	937
HapII	CCGG	2 cut(s)	353, 1130
HhaI	GCGC	2 cut(s)	903, 1232
Hin6I	GCGC	2 cut(s)	901, 1230
HinP1I	GCGC	2 cut(s)	901, 1230
HincII	GTYRAC	2 cut(s)	686, 973
HindII	GTYRAC	2 cut(s)	686, 973
HinfI	GANTC	4 cut(s)	29, 295, 855, 950
HpaII	CCGG	2 cut(s)	353, 1130
HphI	GGTGA	2 cut(s)	1067, 1250
Hpy166II	GTNNAC	4 cut(s)	686, 943, 973, 980
Hpy188I	TCNGA	9 cut(s)	167, 194, 202, 348, 431, 801, 916, 1219, 1381
Hpy188III	TCNNGA	4 cut(s)	225, 654, 871, 954
Hpy8I	GTNNAC	4 cut(s)	686, 943, 973, 980
HpyAV	CCTTC	3 cut(s)	412, 469, 876
HpyCH4III	ACNGT	5 cut(s)	210, 625, 977, 1046, 1154
HpyCH4IV	ACGT	1 cut(s)	522
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 406, 1025
HpyF3I	CTNAG	4 cut(s)	199, 357, 383, 915
HpySE526I	ACGT	1 cut(s)	522
HspAI	GCGC	2 cut(s)	901, 1230
KroI	GCCGGC	1 cut(s)	352
KroNI	GCCGGC	1 cut(s)	354
Kzo9I	GATC	5 cut(s)	151, 217, 362, 904, 1099
Lsp1109I	GCAGC	1 cut(s)	1192
LweI	GCATC	4 cut(s)	42, 920, 1026, 1315
MaeI	CTAG	2 cut(s)	56, 1040
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	5 cut(s)	153, 219, 364, 906, 1101
MbiI	CCGCTC	2 cut(s)	170, 304
MboI	GATC	5 cut(s)	151, 217, 362, 904, 1099
MboII	GAAGA	6 cut(s)	453, 497, 590, 746, 1045, 1094
MhlI	GDGCHC	3 cut(s)	945, 982, 1227
MluCI	AATT	6 cut(s)	78, 155, 188, 866, 1234, 1349
MlyI	GAGTC	1 cut(s)	944
MmeI	TCCRAC	2 cut(s)	73, 828
Mph1103I	ATGCAT	1 cut(s)	411
MroNI	GCCGGC	1 cut(s)	352
MseI	TTAA	4 cut(s)	81, 159, 177, 729
MslI	CAYNNNNRTG	1 cut(s)	710
MspI	CCGG	2 cut(s)	353, 1130
MspR9I	CCNGG	2 cut(s)	681, 1130
MvaI	CCWGG	1 cut(s)	681
MvnI	CGCG	3 cut(s)	837, 903, 1230
MwoI	GCNNNNNNNGC	3 cut(s)	358, 406, 1025
NaeI	GCCGGC	1 cut(s)	354
NciI	CCSGG	1 cut(s)	1130
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	5 cut(s)	151, 217, 362, 904, 1099
NgoMIV	GCCGGC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	619
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	4 cut(s)	667, 715, 847, 1180
PciI	ACATGT	1 cut(s)	711
PdiI	GCCGGC	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	29, 295, 855
PflFI	GACNNNGTC	1 cut(s)	701
PkrI	GCNGC	1 cut(s)	1182
PleI	GAGTC	1 cut(s)	944
PpsI	GAGTC	1 cut(s)	944
PscI	ACATGT	1 cut(s)	711
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspPI	GGNCC	3 cut(s)	172, 341, 1240
PsrI	GAACNNNNNNTAC	2 cut(s)	1348, 1380
PstI	CTGCAG	1 cut(s)	1389
PsyI	GACNNNGTC	1 cut(s)	701
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	4 cut(s)	81, 159, 177, 729
SatI	GCNGC	1 cut(s)	1181
Sau3AI	GATC	5 cut(s)	151, 217, 362, 904, 1099
Sau96I	GGNCC	3 cut(s)	172, 341, 1240
SchI	GAGTC	1 cut(s)	944
ScrFI	CCNGG	2 cut(s)	681, 1130
SduI	GDGCHC	3 cut(s)	945, 982, 1227
SfaNI	GCATC	4 cut(s)	42, 920, 1026, 1315
SfcI	CTRYAG	1 cut(s)	1385
SinI	GGWCC	3 cut(s)	172, 341, 1240
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	1244
SmoI	CTYRAG	1 cut(s)	1244
Sse9I	AATT	6 cut(s)	78, 155, 188, 866, 1234, 1349
SsiI	CCGC	4 cut(s)	170, 302, 1228, 1328
SspI	AATATT	2 cut(s)	247, 796
SspMI	CTAG	2 cut(s)	56, 1040
StyD4I	CCNGG	2 cut(s)	679, 1128
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	5 cut(s)	210, 625, 977, 1046, 1154
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	1149
TasI	AATT	6 cut(s)	78, 155, 188, 866, 1234, 1349
TfiI	GAWTC	3 cut(s)	29, 295, 855
Tru1I	TTAA	4 cut(s)	81, 159, 177, 729
Tru9I	TTAA	4 cut(s)	81, 159, 177, 729
TscAI	CASTG	2 cut(s)	982, 1051
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	1 cut(s)	1180
Tsp45I	GTSAC	1 cut(s)	619
TspGWI	ACGGA	2 cut(s)	430, 995
TspRI	CASTG	2 cut(s)	982, 1051
Tth111I	GACNNNGTC	1 cut(s)	701
VneI	GTGCAC	2 cut(s)	941, 978
VpaK11BI	GGWCC	3 cut(s)	172, 341, 1240
XapI	RAATTY	4 cut(s)	188, 866, 1234, 1349
XceI	RCATGY	4 cut(s)	667, 715, 847, 1180
XspI	CTAG	2 cut(s)	56, 1040
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.