Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002048.1

Orthogroup ID

OG0002409

Physical Location & Seq

Genomic Coordinates Reverse (-)

65117 .. 66122

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002048.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgggcttcatgatggaggagcatgatcaaaagcattttgaagagtccaagccaggaccaagaggggtacatttggtggattctattaatttgaatgtcgcttgtttagaaacagaaattgggaggttggcatatacagttgattgcatggaacccaagctggaggagttaagattacatgtatttaacttagaacgtacgatgcttgaaatattgaatggtgattgcattgaagaaattgtttctgatgatgataggacttcattccgtgaggaagttgcaagaatgacgatgctagacaatgtttttggtgatgatattagggaggaaatgggagtgctacctcattttgttgatcttccattcatggataagcacaaccacccggttcaaagaaatgcgttcgactgtggtgtgtttgtaataagaaacatgcagcattatggcacacaatgggatgaggattatgtttcagatgaacaccgcgcaaatttggtccttgagtgtgtcaatcaccctcgcaatgaggtggtaaatgtaagagaaatggtggcagattgtttgttgcaacgaggggctgatgcggtagatggaatggttggtaaagctcatcacatgatgaccagtggtggcatggcaatagatgttgatcccatgcacgagagaagaggttacttgggtaatggaaacaagcaggaattttgcaatctgtgttcaagttgcacatctgacctacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

246

Amino Acids

28.14

Weight (kDa)

4.75

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002409)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002091 RLG00000004454 RLG00000033140 RLG00000033141 RLG00000033142
rosa_multiflora	Rmu_sc0000077.1_g000043 Rmu_sc0000361.1_g000004 Rmu_sc0002048.1_g000017 Rmu_sc0007180.1_g000005 Rmu_sc0007223.1_g000007 Rmu_sc0008769.1_g000009
rosa_roxburghii	Rroxscaffold_2G00118160 Rroxscaffold_2G00118170 Rroxscaffold_2G00125280 Rroxscaffold_3G00237010 Rroxscaffold_5G00349960 Rroxscaffold_5G00349970 Rroxscaffold_5G00362900 Rroxscaffold_7G00197790 Rroxscaffold_7G00197870
rosa_rugosa	Rorug07G0208000
rosa_samantha	Rh1BG098800 Rh1CG156600 Rh2DG571500 Rh4AG336300 Rh4BG133300 Rh4BG219500 Rh4DG120500 Rh4DG338800 Rh5DG299800 Rh6AG195900 Rh6BG101300 Rh6BG101400 Rh6BG101500 Rh6CG173400 Rh6CG200800 Rh7AG275000 Rh7DG346800
rosa_wichuraiana	Rw4G010230 Rw5G035120 Rw6G007570 Rw6G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	486
AciI	CCGC	2 cut(s)	484, 584
AclWI	GGATC	1 cut(s)	644
AcsI	RAATTY	2 cut(s)	490, 698
AfaI	GTAC	2 cut(s)	69, 199
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	7 cut(s)	41, 94, 209, 217, 233, 392, 717
AjnI	CCWGG	1 cut(s)	52
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	2 cut(s)	160, 608
AluI	AGCT	2 cut(s)	160, 608
AlwI	GGATC	1 cut(s)	644
ApeKI	GCWGC	1 cut(s)	436
ApoI	RAATTY	2 cut(s)	490, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AseI	ATTAAT	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	2 cut(s)	56, 496
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	3 cut(s)	233, 323, 506
AvaII	GGWCC	2 cut(s)	56, 496
BauI	CACGAG	1 cut(s)	659
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	2 cut(s)	7, 584
BciT130I	CCWGG	1 cut(s)	54
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	386
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	734
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
Bme1390I	CCNGG	2 cut(s)	54, 386
Bme18I	GGWCC	2 cut(s)	56, 496
BmgT120I	GGNCC	2 cut(s)	56, 496
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	2 cut(s)	54, 386
BmsI	GCATC	3 cut(s)	192, 282, 571
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	648
Bse1I	ACTGG	1 cut(s)	624
Bse3DI	GCAATG	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	463
BseJI	GATNNNNATC	1 cut(s)	648
BseMI	GCAATG	1 cut(s)	529
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	2 cut(s)	32, 179
BseXI	GCAGC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	386
BsiWI	CGTACG	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	25, 355, 649
BspACI	CCGC	2 cut(s)	484, 584
BspFNI	CGCG	1 cut(s)	486
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	624
BssMI	GATC	3 cut(s)	25, 355, 649
BssSI	CACGAG	1 cut(s)	659
Bst2BI	CACGAG	1 cut(s)	659
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	3 cut(s)	139, 410, 738
Bst6I	CTCTTC	2 cut(s)	36, 661
BstDEI	CTNAG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	3 cut(s)	28, 358, 652
BstMBI	GATC	3 cut(s)	25, 355, 649
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	2 cut(s)	182, 436
BstSCI	CCNGG	2 cut(s)	52, 384
BstSFI	CTRYAG	1 cut(s)	734
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	631
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	2 cut(s)	56, 496
Csp6I	GTAC	2 cut(s)	68, 198
CviAII	CATG	9 cut(s)	10, 23, 148, 179, 367, 433, 616, 634, 655
CviJI	RGCY	5 cut(s)	6, 52, 160, 578, 608
CviKI_1	RGCY	5 cut(s)	6, 52, 160, 578, 608
CviQI	GTAC	2 cut(s)	68, 198
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	3 cut(s)	27, 357, 651
DpnII	GATC	3 cut(s)	25, 355, 649
Eam1104I	CTCTTC	2 cut(s)	36, 661
EarI	CTCTTC	2 cut(s)	36, 661
Eco47I	GGWCC	2 cut(s)	56, 496
EcoRII	CCWGG	1 cut(s)	52
FaeI	CATG	9 cut(s)	13, 26, 151, 182, 370, 436, 619, 637, 658
FatI	CATG	9 cut(s)	9, 22, 147, 178, 366, 432, 615, 633, 654
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	1 cut(s)	437
GsuI	CTGGAG	1 cut(s)	182
HapII	CCGG	1 cut(s)	386
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	9 cut(s)	13, 26, 151, 182, 370, 436, 619, 637, 658
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	2 cut(s)	44, 80
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	3 cut(s)	233, 323, 506
Hpy188I	TCNGA	3 cut(s)	247, 475, 730
Hpy188III	TCNNGA	1 cut(s)	10
HpyCH4III	ACNGT	3 cut(s)	139, 410, 738
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	8 cut(s)	147, 228, 281, 436, 568, 658, 705, 723
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	9 cut(s)	13, 26, 151, 182, 370, 436, 619, 637, 658
HspAI	GCGC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	25, 355, 649
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	6 cut(s)	39, 66, 146, 399, 637, 680
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	3 cut(s)	192, 282, 571
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	671
MalI	GATC	3 cut(s)	27, 357, 651
MboI	GATC	3 cut(s)	25, 355, 649
MboII	GAAGA	4 cut(s)	53, 245, 350, 678
MluCI	AATT	5 cut(s)	88, 117, 237, 490, 698
MlyI	GAGTC	1 cut(s)	53
MseI	TTAA	3 cut(s)	87, 170, 186
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	54, 386
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	486
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	3 cut(s)	25, 355, 649
NlaIII	CATG	9 cut(s)	13, 26, 151, 182, 370, 436, 619, 637, 658
NlaIV	GGNNCC	1 cut(s)	153
NspI	RCATGY	2 cut(s)	182, 436
PagI	TCATGA	1 cut(s)	9
PciI	ACATGT	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	80
Pfl23II	CGTACG	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	438
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PscI	ACATGT	1 cut(s)	178
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspLI	CGTACG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	56, 496
RsaI	GTAC	2 cut(s)	69, 199
RsaNI	GTAC	2 cut(s)	68, 198
SaqAI	TTAA	3 cut(s)	87, 170, 186
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	3 cut(s)	25, 355, 649
Sau96I	GGNCC	2 cut(s)	56, 496
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	54, 386
SetI	ASST	8 cut(s)	128, 162, 199, 346, 531, 610, 673, 735
SfaNI	GCATC	3 cut(s)	192, 282, 571
SfcI	CTRYAG	1 cut(s)	734
SinI	GGWCC	2 cut(s)	56, 496
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	5 cut(s)	88, 117, 237, 490, 698
SsiI	CCGC	2 cut(s)	484, 584
SspI	AATATT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	52, 384
TaaI	ACNGT	3 cut(s)	139, 410, 738
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	405
TasI	AATT	5 cut(s)	88, 117, 237, 490, 698
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	87, 170, 186
Tru9I	TTAA	3 cut(s)	87, 170, 186
TscAI	CASTG	1 cut(s)	631
TseI	GCWGC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	252, 355, 492
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	631
VpaK11BI	GGWCC	2 cut(s)	56, 496
VspI	ATTAAT	1 cut(s)	87
XapI	RAATTY	2 cut(s)	490, 698
XceI	RCATGY	2 cut(s)	182, 436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.