Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002409

Physical Location & Seq

Genomic Coordinates Forward (+)

80183210 .. 80184916

Gene Structure 1707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG571500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAAGCAGCAATCAAAAGGATGGATATGCAAGCAACAAAAGAATTCCTTGCTGAACTGAAGGTTCTAACACATGTTCATCACTTAAATCTGGTGCGCTTGATAGGGTATTGTGTCGAGGACTCCTTGTTCTTAGAGTATGAGTACATTGAAAATGGTAACTTAAGTCAACATTTGCATGGCTCTTCTGGTCTAGGCCCATTGCCATGGCAAACCAGGATGCAAATAGCCTTAGATTCTGCAAGAGGACTAGAATATATCCATGAACACACTGTTCCTGTCTACGTTCATCGTGACATCAAGTCAGCAAACATCTTAATAGACAAAAACTTCCGCGCAAAGATGACCAGAATGGAATGGATTGAACACACCTGTCGCGTTAGCATGTTGGATAGATTCAAGGGGAAATTCAGGATGTGCAGAAGGATATACATTCCTTTGCGCGATCCTGCATCTGAGGGGCATTGGTATTTGTTGGTGGTGCACAAAGACTCCAGCTTTGGGGAAATCGTTGACAGTGCACCTGATGATGATAGGACTTCATTCCGTGAGGAAGTTGCAAGAATGGCGATGAAGATGCTAGACAGTGTTTTTGGTGATGATATTAGGGAGGAAATGGGACTGCTACCTCATTTTACTGATCTTCCATTCATGGATAAGCACAACCACCCGGTTCAAAGAAACTCGTTCGACTGTGGTGTGTTTGTAATAAGAAACATGCAGCATTATGGCACACAATGGAATGAGGATTATGTTTCAGATGAGCACCGCGCAAATTTGGTCCTTGAGTGTGTCAATCACCCTCGCAATAAGGTGGAAAATGTAAGAGAAATGGTGGCAGATTGTTTGTCGCAACGAGGGGGAGATGCGGTAGATGGAAACAAGCATGAATTTTGTAATCTGTGTTCAAGTTGCACATCTGACCTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

310

Amino Acids

36.01

Weight (kDa)

5.89

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 116	4.2e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 115	7.7e-16	Protein kinase domain
Peptidase_C48	PF02902	136 - 250	1.6e-09	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002409)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002091 RLG00000004454 RLG00000033140 RLG00000033141 RLG00000033142
rosa_multiflora	Rmu_sc0000077.1_g000043 Rmu_sc0000361.1_g000004 Rmu_sc0002048.1_g000017 Rmu_sc0007180.1_g000005 Rmu_sc0007223.1_g000007 Rmu_sc0008769.1_g000009
rosa_roxburghii	Rroxscaffold_2G00118160 Rroxscaffold_2G00118170 Rroxscaffold_2G00125280 Rroxscaffold_3G00237010 Rroxscaffold_5G00349960 Rroxscaffold_5G00349970 Rroxscaffold_5G00362900 Rroxscaffold_7G00197790 Rroxscaffold_7G00197870
rosa_rugosa	Rorug07G0208000
rosa_samantha	Rh1BG098800 Rh1CG156600 Rh2DG571500 Rh4AG336300 Rh4BG133300 Rh4BG219500 Rh4DG120500 Rh4DG338800 Rh5DG299800 Rh6AG195900 Rh6BG101300 Rh6BG101400 Rh6BG101500 Rh6CG173400 Rh6CG200800 Rh7AG275000 Rh7DG346800
rosa_wichuraiana	Rw4G010230 Rw5G035120 Rw6G007570 Rw6G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	4 cut(s)	336, 378, 444, 771
AciI	CCGC	3 cut(s)	334, 769, 869
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	4 cut(s)	44, 407, 775, 890
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	501
AflII	CTTAAG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	5 cut(s)	152, 365, 400, 677, 909
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	215
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	1 cut(s)	498
AluI	AGCT	1 cut(s)	498
Alw21I	GWGCWC	3 cut(s)	486, 523, 768
Alw44I	GTGCAC	2 cut(s)	482, 519
AlwI	GGATC	1 cut(s)	440
AoxI	GGCC	1 cut(s)	196
ApaLI	GTGCAC	2 cut(s)	482, 519
ApeKI	GCWGC	2 cut(s)	8, 721
ApoI	RAATTY	4 cut(s)	44, 407, 775, 890
ArsI	GACNNNNNNTTYG	4 cut(s)	482, 514, 575, 607
AspLEI	GCGC	4 cut(s)	99, 338, 444, 773
AspS9I	GGNCC	2 cut(s)	197, 781
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	2 cut(s)	608, 791
AvaII	GGWCC	1 cut(s)	781
BaeGI	GKGCMC	2 cut(s)	486, 523
Bbv12I	GWGCWC	3 cut(s)	486, 523, 768
BbvI	GCAGC	2 cut(s)	20, 733
BccI	CCATC	2 cut(s)	16, 869
BcgI	CGANNNNNNTGC	2 cut(s)	559, 593
BciT130I	CCWGG	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	671
BfaI	CTAG	3 cut(s)	194, 251, 581
BfmI	CTRYAG	1 cut(s)	926
BfrI	CTTAAG	1 cut(s)	163
BisI	GCNGC	2 cut(s)	9, 722
BlsI	GCNGC	2 cut(s)	10, 723
Bme1390I	CCNGG	2 cut(s)	217, 671
Bme18I	GGWCC	1 cut(s)	781
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	197, 781
BmrFI	CCNGG	2 cut(s)	217, 671
BmsI	GCATC	4 cut(s)	210, 461, 567, 856
BpmI	CTGGAG	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	671
BsaJI	CCNNGG	1 cut(s)	206
BsaXI	ACNNNNNCTCC	4 cut(s)	476, 506, 855, 885
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	3 cut(s)	27, 225, 420
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	447
BseSI	GKGCMC	2 cut(s)	486, 523
BseXI	GCAGC	2 cut(s)	20, 733
BsgI	GTGCAG	1 cut(s)	439
Bsh1236I	CGCG	4 cut(s)	336, 378, 444, 771
BshFI	GGCC	1 cut(s)	198
BsiHKAI	GWGCWC	3 cut(s)	486, 523, 768
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmFI	GGGAC	1 cut(s)	633
BsnI	GGCC	1 cut(s)	198
Bsp1286I	GDGCHC	3 cut(s)	486, 523, 768
Bsp143I	GATC	2 cut(s)	445, 640
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	3 cut(s)	334, 769, 869
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	448
BspFNI	CGCG	4 cut(s)	336, 378, 444, 771
BspMAI	CTGCAG	1 cut(s)	930
BspPI	GGATC	1 cut(s)	440
BspQI	GCTCTTC	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	445, 640
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	4 cut(s)	274, 518, 587, 695
Bst6I	CTCTTC	1 cut(s)	190
BstAFI	CTTAAG	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	133, 232, 456
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	27, 225, 420
BstFNI	CGCG	4 cut(s)	336, 378, 444, 771
BstHHI	GCGC	4 cut(s)	99, 338, 444, 773
BstKTI	GATC	2 cut(s)	448, 643
BstMBI	GATC	2 cut(s)	445, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	3 cut(s)	77, 388, 721
BstSCI	CCNGG	2 cut(s)	215, 669
BstSFI	CTRYAG	1 cut(s)	926
BstSLI	GKGCMC	2 cut(s)	486, 523
BstUI	CGCG	4 cut(s)	336, 378, 444, 771
BstV1I	GCAGC	2 cut(s)	20, 733
BstXI	CCANNNNNNTGG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	584
BtsCI	GGATG	3 cut(s)	27, 225, 420
BtsIMutI	CAGTG	3 cut(s)	270, 523, 592
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	4 cut(s)	99, 338, 444, 773
Cfr13I	GGNCC	2 cut(s)	197, 781
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	8 cut(s)	74, 179, 207, 263, 385, 652, 718, 887
CviJI	RGCY	4 cut(s)	183, 198, 230, 498
CviKI_1	RGCY	4 cut(s)	183, 198, 230, 498
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	133, 232, 456
DpnI	GATC	2 cut(s)	447, 642
DpnII	GATC	2 cut(s)	445, 640
DriI	GACNNNNNGTC	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	190
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	781
Eco57I	CTGAAG	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	8 cut(s)	77, 182, 210, 266, 388, 655, 721, 890
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	8 cut(s)	73, 178, 206, 262, 384, 651, 717, 886
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	9, 722
FokI	GGATG	3 cut(s)	34, 232, 427
Fsp4HI	GCNGC	2 cut(s)	9, 722
FspBI	CTAG	3 cut(s)	194, 251, 581
GlaI	GCGC	4 cut(s)	98, 337, 443, 772
GluI	GCNGC	2 cut(s)	9, 722
GsuI	CTGGAG	1 cut(s)	478
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	671
HhaI	GCGC	4 cut(s)	99, 338, 444, 773
Hin1II	CATG	8 cut(s)	77, 182, 210, 266, 388, 655, 721, 890
Hin6I	GCGC	4 cut(s)	97, 336, 442, 771
HinP1I	GCGC	4 cut(s)	97, 336, 442, 771
HincII	GTYRAC	2 cut(s)	170, 514
HindII	GTYRAC	2 cut(s)	170, 514
HinfI	GANTC	4 cut(s)	122, 236, 396, 491
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	2 cut(s)	608, 791
Hpy166II	GTNNAC	5 cut(s)	170, 283, 484, 514, 521
Hpy188I	TCNGA	3 cut(s)	457, 760, 922
Hpy188III	TCNNGA	2 cut(s)	293, 412
Hpy8I	GTNNAC	5 cut(s)	170, 283, 484, 514, 521
HpyAV	CCTTC	2 cut(s)	55, 417
HpyCH4III	ACNGT	4 cut(s)	274, 518, 587, 695
HpyCH4IV	ACGT	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	3 cut(s)	133, 232, 456
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	8 cut(s)	77, 182, 210, 266, 388, 655, 721, 890
HspAI	GCGC	4 cut(s)	97, 336, 442, 771
Kzo9I	GATC	2 cut(s)	445, 640
LguI	GCTCTTC	1 cut(s)	190
Lsp1109I	GCAGC	2 cut(s)	20, 733
LweI	GCATC	4 cut(s)	210, 461, 567, 856
MaeI	CTAG	3 cut(s)	194, 251, 581
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	158, 293
MalI	GATC	2 cut(s)	447, 642
MboI	GATC	2 cut(s)	445, 640
MboII	GAAGA	3 cut(s)	177, 586, 635
MhlI	GDGCHC	3 cut(s)	486, 523, 768
MluCI	AATT	4 cut(s)	44, 407, 775, 890
MlyI	GAGTC	2 cut(s)	116, 485
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	9 cut(s)	112, 239, 451, 544, 604, 639, 739, 813, 851
MseI	TTAA	3 cut(s)	86, 164, 317
MslI	CAYNNNNRTG	2 cut(s)	177, 205
MspCI	CTTAAG	1 cut(s)	163
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	2 cut(s)	217, 671
MvaI	CCWGG	1 cut(s)	217
MvnI	CGCG	4 cut(s)	336, 378, 444, 771
MwoI	GCNNNNNNNGC	1 cut(s)	566
NciI	CCSGG	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	445, 640
NlaIII	CATG	8 cut(s)	77, 182, 210, 266, 388, 655, 721, 890
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	3 cut(s)	77, 388, 721
PciI	ACATGT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	236, 396
PkrI	GCNGC	2 cut(s)	10, 723
PleI	GAGTC	2 cut(s)	116, 485
PpsI	GAGTC	2 cut(s)	116, 485
PscI	ACATGT	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspPI	GGNCC	2 cut(s)	197, 781
PsrI	GAACNNNNNNTAC	2 cut(s)	889, 921
PstI	CTGCAG	1 cut(s)	930
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	2 cut(s)	177, 205
SapI	GCTCTTC	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	86, 164, 317
SatI	GCNGC	2 cut(s)	9, 722
Sau3AI	GATC	2 cut(s)	445, 640
Sau96I	GGNCC	2 cut(s)	197, 781
SchI	GAGTC	2 cut(s)	116, 485
ScrFI	CCNGG	2 cut(s)	217, 671
SduI	GDGCHC	3 cut(s)	486, 523, 768
SetI	ASST	8 cut(s)	66, 288, 374, 500, 526, 631, 816, 927
SfaNI	GCATC	4 cut(s)	210, 461, 567, 856
SfcI	CTRYAG	1 cut(s)	926
SinI	GGWCC	1 cut(s)	781
SmiMI	CAYNNNNRTG	2 cut(s)	177, 205
SmlI	CTYRAG	2 cut(s)	163, 785
SmoI	CTYRAG	2 cut(s)	163, 785
Sse9I	AATT	4 cut(s)	44, 407, 775, 890
SsiI	CCGC	3 cut(s)	334, 769, 869
SspMI	CTAG	3 cut(s)	194, 251, 581
StyD4I	CCNGG	2 cut(s)	215, 669
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	4 cut(s)	274, 518, 587, 695
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	117, 690
TasI	AATT	4 cut(s)	44, 407, 775, 890
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	236, 396
Tru1I	TTAA	3 cut(s)	86, 164, 317
Tru9I	TTAA	3 cut(s)	86, 164, 317
TscAI	CASTG	3 cut(s)	277, 523, 592
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	8, 721
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	7 cut(s)	68, 278, 279, 531, 587, 640, 903
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	3 cut(s)	277, 523, 592
Vha464I	CTTAAG	1 cut(s)	163
VneI	GTGCAC	2 cut(s)	482, 519
VpaK11BI	GGWCC	1 cut(s)	781
XapI	RAATTY	4 cut(s)	44, 407, 775, 890
XceI	RCATGY	3 cut(s)	77, 388, 721
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	3 cut(s)	194, 251, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.