Rh6BG101500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002409
Physical Location & Seq
Reverse (-)
15838437 .. 15838922
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG101500.1

Sequence Viewer

Length: 486 bp
ATGGACCAAGCAAATGTCGTCTCCAGTATCGGCTTCGGGGAGTTACATCACTTGAGATGCAGCACAATATTTGACACGGTATGTGAGATGATGCTTAATAGTATTGATCCTCTAAATGAGATTGTGTTGATACATGGCAAGGAAATACCCTTTGGACCCACAGATTTTGCACGTGTCATGGGCATAAAGGACGGTGGATTAGACATTCAGAAGATCGGAGATATGAACGAAAGTCTTGTTAGGTTAATTAGGAAACAATTGGGGGGTGGAGAAGGTGGACTACACATTGCAAGTTTGAAGAAATGTATCATGGAAAGTACACAGGTTGATGAAATATTCAAGATAGCTTATACACTTTATGCGGTCGCATGCATTTTATGTCCCAACGGAACCAATTTGGTCGACCAGTCATTGATTTCTACTCTAGTAGAGACGAACATGATAAAGGATCTGAATTGGGCAACGTTCTGCTACTATAAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

161

Amino Acids

17.82

Weight (kDa)

5.1

Isoelectric Point (pI)

24.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 402
AciI CCGC 1 cut(s) 362
AclI AACGTT 1 cut(s) 464
AclWI GGATC 2 cut(s) 101, 456
AcvI CACGTG 1 cut(s) 173
AfaI GTAC 1 cut(s) 319
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 2 cut(s) 298, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw26I GTCTC 2 cut(s) 25, 425
AlwI GGATC 2 cut(s) 101, 456
ApeKI GCWGC 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 4, 155
AvaII GGWCC 2 cut(s) 4, 155
BarI GAAGNNNNNNTAC 2 cut(s) 264, 296
BbrPI CACGTG 1 cut(s) 173
BbvI GCAGC 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 25, 425
BfaI CTAG 1 cut(s) 425
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme18I GGWCC 2 cut(s) 4, 155
BmgT120I GGNCC 2 cut(s) 4, 155
BmiI GGNNCC 2 cut(s) 157, 391
BmsI GCATC 2 cut(s) 47, 81
BpmI CTGGAG 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 24, 406
Bse3DI GCAATG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 24, 406
BseXI GCAGC 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 366
BsiEI CGRYCG 1 cut(s) 366
BslFI GGGAC 1 cut(s) 366
BsmAI GTCTC 2 cut(s) 25, 425
BsmBI CGTCTC 2 cut(s) 25, 425
BsmFI GGGAC 1 cut(s) 366
Bsp143I GATC 3 cut(s) 106, 213, 448
BspACI CCGC 1 cut(s) 362
BspLI GGNNCC 2 cut(s) 157, 391
BspPI GGATC 2 cut(s) 101, 456
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 2 cut(s) 24, 406
BssMI GATC 3 cut(s) 106, 213, 448
Bst4CI ACNGT 2 cut(s) 79, 194
BstBAI YACGTR 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 370
BstKTI GATC 3 cut(s) 109, 216, 451
BstMAI GTCTC 2 cut(s) 25, 425
BstMBI GATC 3 cut(s) 106, 213, 448
BstMCI CGRYCG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 4, 155
Csp6I GTAC 1 cut(s) 318
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 5 cut(s) 134, 178, 310, 369, 439
CviJI RGCY 2 cut(s) 33, 347
CviKI_1 RGCY 2 cut(s) 33, 347
CviQI GTAC 1 cut(s) 318
DpnI GATC 3 cut(s) 108, 215, 450
DpnII GATC 3 cut(s) 106, 213, 448
Eco47I GGWCC 2 cut(s) 4, 155
Eco72I CACGTG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 374
Esp3I CGTCTC 2 cut(s) 25, 425
FaeI CATG 5 cut(s) 137, 181, 313, 372, 442
FaqI GGGAC 1 cut(s) 366
FatI CATG 5 cut(s) 133, 177, 309, 368, 438
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 1 cut(s) 425
GluI GCNGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 7
Hin1II CATG 5 cut(s) 137, 181, 313, 372, 442
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
Hpy166II GTNNAC 3 cut(s) 278, 320, 403
Hpy188I TCNGA 3 cut(s) 210, 218, 453
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 3 cut(s) 278, 320, 403
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 79, 194
HpyCH4IV ACGT 2 cut(s) 172, 464
HpyCH4V TGCA 4 cut(s) 60, 170, 290, 372
HpySE526I ACGT 2 cut(s) 172, 464
Hsp92II CATG 5 cut(s) 137, 181, 313, 372, 442
Kzo9I GATC 3 cut(s) 106, 213, 448
LpnPI CCDG 3 cut(s) 37, 308, 419
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 2 cut(s) 47, 81
MaeI CTAG 1 cut(s) 425
MaeII ACGT 2 cut(s) 172, 464
MaeIII GTNAC 1 cut(s) 42
MalI GATC 3 cut(s) 108, 215, 450
MboI GATC 3 cut(s) 106, 213, 448
MboII GAAGA 2 cut(s) 223, 310
MfeI CAATTG 1 cut(s) 257
MflI RGATCY 1 cut(s) 448
MluCI AATT 4 cut(s) 246, 257, 394, 454
MnlI CCTC 1 cut(s) 120
Mph1103I ATGCAT 1 cut(s) 374
MseI TTAA 2 cut(s) 96, 245
MunI CAATTG 1 cut(s) 257
NdeII GATC 3 cut(s) 106, 213, 448
NlaIII CATG 5 cut(s) 137, 181, 313, 372, 442
NlaIV GGNNCC 2 cut(s) 157, 391
NsiI ATGCAT 1 cut(s) 374
NspI RCATGY 1 cut(s) 372
PaeI GCATGC 1 cut(s) 372
PkrI GCNGC 1 cut(s) 62
PmaCI CACGTG 1 cut(s) 173
PmlI CACGTG 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 173
Psp1406I AACGTT 1 cut(s) 464
PspCI CACGTG 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 157, 391
PspPI GGNCC 2 cut(s) 4, 155
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SalI GTCGAC 1 cut(s) 401
SaqAI TTAA 2 cut(s) 96, 245
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 3 cut(s) 106, 213, 448
Sau96I GGNCC 2 cut(s) 4, 155
SetI ASST 6 cut(s) 175, 245, 277, 327, 349, 467
SfaNI GCATC 2 cut(s) 47, 81
SinI GGWCC 2 cut(s) 4, 155
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SphI GCATGC 1 cut(s) 372
Sse9I AATT 4 cut(s) 246, 257, 394, 454
SsiI CCGC 1 cut(s) 362
SspI AATATT 2 cut(s) 69, 336
SspMI CTAG 1 cut(s) 425
TaaI ACNGT 2 cut(s) 79, 194
TaiI ACGT 2 cut(s) 175, 467
TaqI TCGA 1 cut(s) 402
TasI AATT 4 cut(s) 246, 257, 394, 454
TatI WGTACW 1 cut(s) 317
Tru1I TTAA 2 cut(s) 96, 245
Tru9I TTAA 2 cut(s) 96, 245
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 2 cut(s) 239, 345
TspGWI ACGGA 1 cut(s) 402
VpaK11BI GGWCC 2 cut(s) 4, 155
XceI RCATGY 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 1 cut(s) 425
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.