Rroxscaffold_5G00362900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002409
Physical Location & Seq
Forward (+)
43953789 .. 43956616
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362900.1

Sequence Viewer

Length: 231 bp
ATGATTGTCTATGCCGGACTTTTCGCCACCACCGCCGACCCAACTCCGGAACAGAACGACCCCCAAGATCGCGAAAAGAAGATTGTCTCTACCACACCTATACTCAAGCCCAGCAAAATACCTTTTGGAATCAACTCGATTCGAGGTCAGATGAGAGAGATATCGGCCGGTGAAGGAAGAGCAGCATTGGGCGAATTCCAGCTCGAGCTGTGCAGCTTCTCGGCCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.23

Weight (kDa)

5.25

Isoelectric Point (pI)

17.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 46
AluBI AGCT 3 cut(s) 202, 208, 216
AluI AGCT 3 cut(s) 202, 208, 216
Alw26I GTCTC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 203
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 2 cut(s) 165, 222
ApeKI GCWGC 2 cut(s) 182, 213
ApoI RAATTY 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 203
BbvI GCAGC 2 cut(s) 194, 225
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 229
BisI GCNGC 2 cut(s) 183, 214
BlsI GCNGC 2 cut(s) 184, 215
BmeT110I CYCGRG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 167
BseAI TCCGGA 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 46
BseX3I CGGCCG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 194, 225
BseYI CCCAGC 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 2 cut(s) 167, 224
BsiEI CGRYCG 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 3 cut(s) 15, 47, 168
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 2 cut(s) 167, 224
BsoBI CYCGRG 1 cut(s) 203
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 1 cut(s) 67
Bsp68I TCGCGA 1 cut(s) 72
BspACI CCGC 1 cut(s) 33
BspANI GGCC 2 cut(s) 167, 224
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 72
BspQI GCTCTTC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssMI GATC 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 172
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 67
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 194, 225
BstZI CGGCCG 1 cut(s) 165
BsuRI GGCC 2 cut(s) 167, 224
BtuMI TCGCGA 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 167
CviJI RGCY 6 cut(s) 109, 167, 202, 208, 216, 224
CviKI_1 RGCY 6 cut(s) 109, 167, 202, 208, 216, 224
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 165
EagI CGGCCG 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 165
Eco32I GATATC 1 cut(s) 162
Eco52I CGGCCG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 194
EcoRV GATATC 1 cut(s) 162
FaiI YATR 2 cut(s) 12, 101
Fnu4HI GCNGC 2 cut(s) 183, 214
Fsp4HI GCNGC 2 cut(s) 183, 214
FspBI CTAG 1 cut(s) 229
GluI GCNGC 2 cut(s) 183, 214
GsaI CCCAGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 167, 224
HapII CCGG 3 cut(s) 15, 47, 168
HinfI GANTC 2 cut(s) 129, 139
HpaII CCGG 3 cut(s) 15, 47, 168
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 47, 71
HpyAV CCTTC 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 67
LguI GCTCTTC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 28, 60, 124, 181, 212
Lsp1109I GCAGC 2 cut(s) 194, 225
MaeI CTAG 1 cut(s) 229
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 2 cut(s) 91, 189
MluCI AATT 1 cut(s) 194
MnlI CCTC 1 cut(s) 137
MroI TCCGGA 1 cut(s) 46
MspI CCGG 3 cut(s) 15, 47, 168
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 1 cut(s) 67
NmeAIII GCCGAG 1 cut(s) 200
NruI TCGCGA 1 cut(s) 72
PaeR7I CTCGAG 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 129, 139
PkrI GCNGC 2 cut(s) 184, 215
PspFI CCCAGC 1 cut(s) 110
PspXI VCTCGAGB 1 cut(s) 203
RruI TCGCGA 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 172
SatI GCNGC 2 cut(s) 183, 214
Sau3AI GATC 1 cut(s) 67
SetI ASST 6 cut(s) 100, 124, 148, 204, 210, 218
Sfr274I CTCGAG 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 104, 203
SmoI CTYRAG 2 cut(s) 104, 203
Sse9I AATT 1 cut(s) 194
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 229
TaqI TCGA 3 cut(s) 137, 142, 204
TasI AATT 1 cut(s) 194
TfiI GAWTC 2 cut(s) 129, 139
TseI GCWGC 2 cut(s) 182, 213
XapI RAATTY 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 203
XspI CTAG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.