Rroxscaffold_3G00237010

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002409
Physical Location & Seq
Forward (+)
24534713 .. 24535366
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237010.1

Sequence Viewer

Length: 543 bp
ATGGACCAAGCAAATGTCGTCTCCACTATCGGCTTTGGAGAGATACATCGCCCGGGATGCATCACAATATATGACACGGATGGTGGATTAAACATTCAGATGATGGGAGATACGAATGAAAGTCTTGTTAGGTTAATTAGGAAACAATTGGGGGGTGGAGAAGGTGGACTACACATTACAAGTTTGAAGAAATGTATCATGGAAAGTACACGACCTGATGAAATATTCAAGACAAACTATACACTTTATGCGGTCGCATGCATTTTATGTCCCAACGCAACCAATTTGGTCGACCAGTCATTAATTTCTACTCTAGTAGAGACAAACATGATAAAGAATCTGAATTGGGCAACGTTCTGCTACTATAAGATACAGGAGTCGGTCATATCGATGCAGTCGAAAGAGTTCCGCAACCAAGCAATGTGTGCTATTCCTACGAACTTTTACTTTGATGTCGTTGATAATGGATCCAGATGGGTTGACAAAGGAATCACTCCAATCGCTGCTGCATGGGAACACTATTTTAGTAAAGAAATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

180

Amino Acids

20.19

Weight (kDa)

5.18

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AciI CCGC 2 cut(s) 251, 409
AclI AACGTT 1 cut(s) 353
AclWI GGATC 2 cut(s) 462, 475
AfaI GTAC 1 cut(s) 208
AgsI TTSAA 2 cut(s) 187, 229
Alw26I GTCTC 2 cut(s) 25, 314
AlwI GGATC 2 cut(s) 462, 475
Ama87I CYCGRG 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 503, 506
AseI ATTAAT 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 404
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 53, 54
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 4
BaeI ACNNNNGTAYC 2 cut(s) 362, 395
BamHI GGATCC 1 cut(s) 467
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbvI GCAGC 2 cut(s) 490, 493
BccI CCATC 3 cut(s) 74, 97, 468
BcnI CCSGG 2 cut(s) 53, 54
BcoDI GTCTC 2 cut(s) 25, 314
BfaI CTAG 1 cut(s) 314
BisI GCNGC 2 cut(s) 504, 507
BlsI GCNGC 2 cut(s) 505, 508
Bme1390I CCNGG 2 cut(s) 53, 54
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 2 cut(s) 53, 54
BmsI GCATC 3 cut(s) 47, 69, 381
BpuMI CCSGG 2 cut(s) 53, 54
Bsa29I ATCGAT 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 426
BseCI ATCGAT 1 cut(s) 389
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 2 cut(s) 62, 85
BseMI GCAATG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 295
BseXI GCAGC 2 cut(s) 490, 493
Bsh1285I CGRYCG 1 cut(s) 255
BshVI ATCGAT 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 25, 314
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 52
Bsp143I GATC 1 cut(s) 467
BspACI CCGC 2 cut(s) 251, 409
BspDI ATCGAT 1 cut(s) 389
BspLI GGNNCC 1 cut(s) 469
BspPI GGATC 2 cut(s) 462, 475
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 259
BstF5I GGATG 2 cut(s) 62, 85
BstKTI GATC 1 cut(s) 470
BstMAI GTCTC 2 cut(s) 25, 314
BstMBI GATC 1 cut(s) 467
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 2 cut(s) 57, 425
BstNSI RCATGY 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 51, 52
BstV1I GCAGC 2 cut(s) 490, 493
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
Bsu15I ATCGAT 1 cut(s) 389
BsuTUI ATCGAT 1 cut(s) 389
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 62, 85
Cac8I GCNNGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 4
Cfr9I CCCGGG 1 cut(s) 52
ClaI ATCGAT 1 cut(s) 389
Csp6I GTAC 1 cut(s) 207
CviAII CATG 4 cut(s) 199, 258, 328, 510
CviJI RGCY 1 cut(s) 33
CviKI_1 RGCY 1 cut(s) 33
CviQI GTAC 1 cut(s) 207
DpnI GATC 1 cut(s) 469
DpnII GATC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 52
EcoT22I ATGCAT 2 cut(s) 62, 263
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 4 cut(s) 202, 261, 331, 513
FaqI GGGAC 1 cut(s) 255
FatI CATG 4 cut(s) 198, 257, 327, 509
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 504, 507
FokI GGATG 2 cut(s) 69, 92
Fsp4HI GCNGC 2 cut(s) 504, 507
FspBI CTAG 1 cut(s) 314
GluI GCNGC 2 cut(s) 504, 507
HapII CCGG 1 cut(s) 53
Hin1II CATG 4 cut(s) 202, 261, 331, 513
HincII GTYRAC 2 cut(s) 292, 481
HindII GTYRAC 2 cut(s) 292, 481
HinfI GANTC 3 cut(s) 337, 377, 489
HpaII CCGG 1 cut(s) 53
Hpy166II GTNNAC 4 cut(s) 167, 209, 292, 481
Hpy188I TCNGA 2 cut(s) 99, 342
Hpy188III TCNNGA 2 cut(s) 229, 471
Hpy8I GTNNAC 4 cut(s) 167, 209, 292, 481
HpyAV CCTTC 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 60, 261, 394, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 425
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 4 cut(s) 202, 261, 331, 513
Kzo9I GATC 1 cut(s) 467
LpnPI CCDG 5 cut(s) 66, 228, 308, 359, 484
Lsp1109I GCAGC 2 cut(s) 490, 493
LweI GCATC 3 cut(s) 47, 69, 381
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 353
MalI GATC 1 cut(s) 469
MboI GATC 1 cut(s) 467
MboII GAAGA 1 cut(s) 199
MfeI CAATTG 1 cut(s) 146
MflI RGATCY 1 cut(s) 467
MluCI AATT 6 cut(s) 135, 146, 283, 303, 343, 534
MlyI GAGTC 1 cut(s) 386
Mph1103I ATGCAT 2 cut(s) 62, 263
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 3 cut(s) 89, 134, 302
MslI CAYNNNNRTG 2 cut(s) 98, 389
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 53, 54
MunI CAATTG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 57, 425
NciI CCSGG 2 cut(s) 53, 54
NdeII GATC 1 cut(s) 467
NlaIII CATG 4 cut(s) 202, 261, 331, 513
NlaIV GGNNCC 1 cut(s) 469
NsiI ATGCAT 2 cut(s) 62, 263
NspI RCATGY 1 cut(s) 261
PaeI GCATGC 1 cut(s) 261
PcsI WCGNNNNNNNCGW 2 cut(s) 386, 395
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 337, 489
PkrI GCNGC 2 cut(s) 505, 508
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PshBI ATTAAT 1 cut(s) 302
Psp1406I AACGTT 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
RseI CAYNNNNRTG 2 cut(s) 98, 389
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 3 cut(s) 89, 134, 302
SatI GCNGC 2 cut(s) 504, 507
Sau3AI GATC 1 cut(s) 467
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 2 cut(s) 53, 54
SetI ASST 4 cut(s) 134, 166, 217, 356
SfaNI GCATC 3 cut(s) 47, 69, 381
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 54
SmiMI CAYNNNNRTG 2 cut(s) 98, 389
SphI GCATGC 1 cut(s) 261
Sse9I AATT 6 cut(s) 135, 146, 283, 303, 343, 534
SsiI CCGC 2 cut(s) 251, 409
SspI AATATT 1 cut(s) 225
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 51, 52
TaiI ACGT 1 cut(s) 356
TaqI TCGA 3 cut(s) 291, 389, 398
TaqII GACCGA 1 cut(s) 370
TasI AATT 6 cut(s) 135, 146, 283, 303, 343, 534
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 2 cut(s) 337, 489
Tru1I TTAA 3 cut(s) 89, 134, 302
Tru9I TTAA 3 cut(s) 89, 134, 302
TseI GCWGC 2 cut(s) 503, 506
TspDTI ATGAA 2 cut(s) 132, 234
TspGWI ACGGA 1 cut(s) 92
TspMI CCCGGG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 302
XceI RCATGY 1 cut(s) 261
XmaI CCCGGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 1 cut(s) 314
Zsp2I ATGCAT 2 cut(s) 62, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.