Rh7AG275000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002409
Physical Location & Seq
Forward (+)
28712980 .. 28714266
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG275000.1

Sequence Viewer

Length: 1287 bp
ATGCAGGATACTAATATATCTCTGATATTAATATCAGATTCTATGTCAACGGGCGACGCCATTAATGTAGTGAAGAAGAACGAAATACAAGATGAGGAAGTGTGTACGTTTATGTTAACGCCAACGCAATTCATTGAAACCACTCAGGGTCTGACAATGGACCAAGCAAATGTCGTCTCCAGTATCGGCTTCGGGGAGTTACATCACCTGGGATGCAGCACAATATTTGACACGGTATGTGAGATGATGCTTAATAGCATTGATCCTCTAAATGAGATTGTGTTGATACATGGCAAGGAAATACCCTTTGGACCCGCAGATTTTGCACGTGTCATGGGCATAAAGGATGGTGGATTAGACATTCAGAACATGGGAGATACGAACGAAAGTCTTGTTAGGTTAATTAGGAAACAATTGGGGGGTGGAGAAGGTGGACTACACATTGCAAGTTTGAAGAAATGTATCATGGAAAGTACACGGGCTGATGAAATATTCAAGATAGCTTATGCACTTTATGCGGTCGCATGCATTTTATGTCCCAACGGAACCAATTTGGTCGACCAGTCATTGATTTCTACTCTAGTAGAGACGAACTTGATAAAGGATCTGAATTGGGCAACGTTCTGCTACTATAAGATGCAGGAATCAGTCATATCGATGCAATCGAAAGGGTTCCGCAACCAAGCAATTTGTGTGCTATTCCTACAAAACTTTTACTTTGACGTCGTTGATAATGAATCCAGATGGGTTGACAAAGGAATTACTCCAATCGCTGCATGGAACACTACTTTAGTGAAGAAATTGATTAGGTGGGTGGAACAAAATGGGGGAGTCACCAACACAAACCAGAATGTTTGGAGGAGACAACCTATAATCCATGAGAAGGAGTCTGATGCAAATGGGAAAATATATGATGCAAAACAAATATTGTTGAGTGTAGAAGGCCTGCATAAAAGGGTTTCTAATATGGAACAAAAAGAAAGTCGGCTGACAGAATCAATGGAGAGAATGGAGAGGATGCTAGGCTCATTCCAAGGGGCAACAATTAAACATATTGTTGGAGAGGTGTTGGCTCGTTTAGAACAGCGAGATGAAGGCAAGCATGGGGAGTGCCAAGATCAATTTAAGTTCAGAGCGGACCTTAATGTGCATGAATTCAGAGGCTCAGAGGCACAGTCTAATGATCCATCAAGACTATTGAAAGGCAAAAATATTTGCATGAACCCCCTGCCAGACGAGGTCATATGCTTTATTCTTTATATAACTCATTTCCTAGGCATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

428

Amino Acids

48.18

Weight (kDa)

5.39

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 726
AccBSI CCGCTC 1 cut(s) 1136
AccI GTMKAC 1 cut(s) 558
AciI CCGC 4 cut(s) 315, 518, 676, 1136
AclI AACGTT 1 cut(s) 620
AclWI GGATC 3 cut(s) 257, 612, 1178
AcsI RAATTY 1 cut(s) 1154
AcvI CACGTG 1 cut(s) 329
AcyI GRCGYC 2 cut(s) 57, 723
AfaI GTAC 2 cut(s) 106, 475
AfiI CCNNNNNNNGG 1 cut(s) 883
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 4 cut(s) 137, 454, 496, 1201
AjnI CCWGG 1 cut(s) 207
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 1 cut(s) 503
AluI AGCT 1 cut(s) 503
Alw26I GTCTC 3 cut(s) 181, 581, 856
AlwI GGATC 3 cut(s) 257, 612, 1178
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 1 cut(s) 943
ApeKI GCWGC 2 cut(s) 216, 773
ApoI RAATTY 1 cut(s) 1154
ArsI GACNNNNNNTTYG 2 cut(s) 967, 999
AseI ATTAAT 2 cut(s) 29, 63
Asp700I GAANNNNTTC 1 cut(s) 671
AspA2I CCTAGG 1 cut(s) 1273
AspS9I GGNCC 3 cut(s) 160, 311, 1138
AsuHPI GGTGA 2 cut(s) 197, 826
AvaII GGWCC 3 cut(s) 160, 311, 1138
AvrII CCTAGG 1 cut(s) 1273
BarI GAAGNNNNNNTAC 2 cut(s) 420, 452
BbrPI CACGTG 1 cut(s) 329
BbvI GCAGC 2 cut(s) 228, 760
BccI CCATC 3 cut(s) 341, 738, 1195
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 3 cut(s) 181, 581, 856
BfaI CTAG 3 cut(s) 581, 1022, 1274
BisI GCNGC 2 cut(s) 217, 774
BlnI CCTAGG 1 cut(s) 1273
BlsI GCNGC 2 cut(s) 218, 775
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 3 cut(s) 160, 311, 1138
BmgT120I GGNCC 3 cut(s) 160, 311, 1138
BmiI GGNNCC 3 cut(s) 313, 547, 674
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 7 cut(s) 203, 237, 627, 648, 883, 904, 1008
BpmI CTGGAG 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 656
BsaAI YACGTR 1 cut(s) 329
BsaHI GRCGYC 2 cut(s) 57, 723
BsaJI CCNNGG 3 cut(s) 208, 1033, 1273
Bsc4I CCNNNNNNNGG 1 cut(s) 883
Bse1I ACTGG 2 cut(s) 180, 562
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 209
BseCI ATCGAT 1 cut(s) 656
BseDI CCNNGG 3 cut(s) 208, 1033, 1273
BseGI GGATG 3 cut(s) 218, 352, 1023
BseLI CCNNNNNNNGG 1 cut(s) 883
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 158, 1179
BseNI ACTGG 2 cut(s) 180, 562
BseRI GAGGAG 1 cut(s) 874
BseXI GCAGC 2 cut(s) 228, 760
Bsh1285I CGRYCG 1 cut(s) 522
BshFI GGCC 1 cut(s) 945
BshVI ATCGAT 1 cut(s) 656
BsiEI CGRYCG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 1 cut(s) 883
BsmAI GTCTC 3 cut(s) 181, 581, 856
BsmBI CGTCTC 2 cut(s) 181, 581
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 1 cut(s) 945
Bsp143I GATC 4 cut(s) 262, 604, 1117, 1183
BspACI CCGC 4 cut(s) 315, 518, 676, 1136
BspANI GGCC 1 cut(s) 945
BspCNI CTCAG 2 cut(s) 157, 1178
BspDI ATCGAT 1 cut(s) 656
BspLI GGNNCC 3 cut(s) 313, 547, 674
BspPI GGATC 3 cut(s) 257, 612, 1178
BsrBI CCGCTC 1 cut(s) 1136
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 2 cut(s) 180, 562
BssECI CCNNGG 3 cut(s) 208, 1033, 1273
BssMI GATC 4 cut(s) 262, 604, 1117, 1183
BssNI GRCGYC 2 cut(s) 57, 723
BssT1I CCWWGG 2 cut(s) 1033, 1273
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 235, 1176
BstACI GRCGYC 2 cut(s) 57, 723
BstAPI GCANNNNNTGC 2 cut(s) 323, 515
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 4 cut(s) 526, 947, 1100, 1280
BstDEI CTNAG 2 cut(s) 144, 1165
BstF5I GGATG 3 cut(s) 218, 352, 1023
BstKTI GATC 4 cut(s) 265, 607, 1120, 1186
BstMAI GTCTC 3 cut(s) 181, 581, 856
BstMBI GATC 4 cut(s) 262, 604, 1117, 1183
BstMCI CGRYCG 1 cut(s) 522
BstMWI GCNNNNNNNGC 2 cut(s) 323, 515
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 2 cut(s) 528, 1282
BstSCI CCNGG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 228, 760
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
Bsu15I ATCGAT 1 cut(s) 656
BsuRI GGCC 1 cut(s) 945
BsuTUI ATCGAT 1 cut(s) 656
BtsCI GGATG 3 cut(s) 218, 352, 1023
Cac8I GCNNGC 4 cut(s) 526, 947, 1100, 1280
CaiI CAGNNNCTG 1 cut(s) 151
Cfr13I GGNCC 3 cut(s) 160, 311, 1138
ClaI ATCGAT 1 cut(s) 656
CseI GACGC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 105, 474
CviJI RGCY 8 cut(s) 189, 482, 503, 945, 988, 1026, 1073, 1164
CviKI_1 RGCY 8 cut(s) 189, 482, 503, 945, 988, 1026, 1073, 1164
CviQI GTAC 2 cut(s) 105, 474
DdeI CTNAG 2 cut(s) 144, 1165
DpnI GATC 4 cut(s) 264, 606, 1119, 1185
DpnII GATC 4 cut(s) 262, 604, 1117, 1183
Eco130I CCWWGG 2 cut(s) 1033, 1273
Eco147I AGGCCT 1 cut(s) 945
Eco47I GGWCC 3 cut(s) 160, 311, 1138
Eco72I CACGTG 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 1154
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 1033, 1273
EcoT22I ATGCAT 2 cut(s) 530, 1284
ErhI CCWWGG 2 cut(s) 1033, 1273
Esp3I CGTCTC 2 cut(s) 181, 581
FaqI GGGAC 1 cut(s) 522
FauI CCCGC 1 cut(s) 322
FauNDI CATATG 1 cut(s) 1244
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 2 cut(s) 217, 774
FokI GGATG 3 cut(s) 225, 359, 1030
Fsp4HI GCNGC 2 cut(s) 217, 774
FspBI CTAG 3 cut(s) 581, 1022, 1274
GluI GCNGC 2 cut(s) 217, 774
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 1 cut(s) 945
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 2 cut(s) 57, 723
HincII GTYRAC 4 cut(s) 48, 117, 559, 751
HindII GTYRAC 4 cut(s) 48, 117, 559, 751
HinfI GANTC 6 cut(s) 38, 644, 737, 831, 887, 995
HpaI GTTAAC 1 cut(s) 117
HphI GGTGA 2 cut(s) 197, 826
Hpy166II GTNNAC 7 cut(s) 48, 105, 117, 434, 476, 559, 751
Hpy188I TCNGA 9 cut(s) 24, 37, 153, 366, 609, 892, 1133, 1160, 1168
Hpy188III TCNNGA 3 cut(s) 496, 741, 1191
Hpy8I GTNNAC 7 cut(s) 48, 105, 117, 434, 476, 559, 751
Hpy99I CGWCG 2 cut(s) 59, 728
HpyAV CCTTC 4 cut(s) 422, 877, 935, 1088
HpyCH4III ACNGT 2 cut(s) 235, 1176
HpyCH4IV ACGT 4 cut(s) 107, 328, 620, 723
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 515
HpyF3I CTNAG 2 cut(s) 144, 1165
HpySE526I ACGT 4 cut(s) 107, 328, 620, 723
Hsp92I GRCGYC 2 cut(s) 57, 723
KspAI GTTAAC 1 cut(s) 117
Kzo9I GATC 4 cut(s) 262, 604, 1117, 1183
Lsp1109I GCAGC 2 cut(s) 228, 760
LweI GCATC 7 cut(s) 203, 237, 627, 648, 883, 904, 1008
MaeI CTAG 3 cut(s) 581, 1022, 1274
MaeII ACGT 4 cut(s) 107, 328, 620, 723
MaeIII GTNAC 2 cut(s) 198, 832
MalI GATC 4 cut(s) 264, 606, 1119, 1185
MbiI CCGCTC 1 cut(s) 1136
MboI GATC 4 cut(s) 262, 604, 1117, 1183
MboII GAAGA 4 cut(s) 85, 88, 466, 808
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 1 cut(s) 604
MlyI GAGTC 2 cut(s) 840, 896
MmeI TCCRAC 1 cut(s) 1039
MnlI CCTC 8 cut(s) 88, 276, 852, 1008, 1057, 1154, 1162, 1231
Mph1103I ATGCAT 2 cut(s) 530, 1284
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 9 cut(s) 29, 63, 116, 252, 401, 1047, 1125, 1143, 1285
MslI CAYNNNNRTG 1 cut(s) 656
MspR9I CCNGG 1 cut(s) 209
MunI CAATTG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 323, 515
NdeI CATATG 1 cut(s) 1244
NdeII GATC 4 cut(s) 262, 604, 1117, 1183
NlaIV GGNNCC 3 cut(s) 313, 547, 674
NmuCI GTSAC 1 cut(s) 832
NsiI ATGCAT 2 cut(s) 530, 1284
NspI RCATGY 2 cut(s) 528, 1282
PaeI GCATGC 2 cut(s) 528, 1282
PceI AGGCCT 1 cut(s) 945
PcsI WCGNNNNNNNCGW 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 4 cut(s) 38, 644, 737, 995
PflFI GACNNNGTC 1 cut(s) 1238
PkrI GCNGC 2 cut(s) 218, 775
PleI GAGTC 2 cut(s) 839, 895
PmaCI CACGTG 1 cut(s) 329
PmlI CACGTG 1 cut(s) 329
PpsI GAGTC 2 cut(s) 839, 895
Ppu21I YACGTR 1 cut(s) 329
PshBI ATTAAT 2 cut(s) 29, 63
Psp1406I AACGTT 1 cut(s) 620
Psp6I CCWGG 1 cut(s) 207
PspCI CACGTG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 313, 547, 674
PspPI GGNCC 3 cut(s) 160, 311, 1138
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 1238
RsaI GTAC 2 cut(s) 106, 475
RsaNI GTAC 2 cut(s) 105, 474
RseI CAYNNNNRTG 1 cut(s) 656
SalI GTCGAC 1 cut(s) 557
SaqAI TTAA 9 cut(s) 29, 63, 116, 252, 401, 1047, 1125, 1143, 1285
SatI GCNGC 2 cut(s) 217, 774
Sau3AI GATC 4 cut(s) 262, 604, 1117, 1183
Sau96I GGNCC 3 cut(s) 160, 311, 1138
SchI GAGTC 2 cut(s) 840, 896
ScrFI CCNGG 1 cut(s) 209
SfaNI GCATC 7 cut(s) 203, 237, 627, 648, 883, 904, 1008
SinI GGWCC 3 cut(s) 160, 311, 1138
SmiMI CAYNNNNRTG 1 cut(s) 656
SphI GCATGC 2 cut(s) 528, 1282
SseBI AGGCCT 1 cut(s) 945
SsiI CCGC 4 cut(s) 315, 518, 676, 1136
SspI AATATT 4 cut(s) 225, 492, 927, 1213
SspMI CTAG 3 cut(s) 581, 1022, 1274
StuI AGGCCT 1 cut(s) 945
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 2 cut(s) 1033, 1273
TaaI ACNGT 2 cut(s) 235, 1176
TaiI ACGT 4 cut(s) 110, 331, 623, 726
TaqI TCGA 3 cut(s) 558, 656, 665
TatI WGTACW 1 cut(s) 473
TfiI GAWTC 4 cut(s) 38, 644, 737, 995
Tru1I TTAA 9 cut(s) 29, 63, 116, 252, 401, 1047, 1125, 1143, 1285
Tru9I TTAA 9 cut(s) 29, 63, 116, 252, 401, 1047, 1125, 1143, 1285
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 2 cut(s) 216, 773
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 6 cut(s) 121, 501, 750, 1107, 1167, 1235
TspGWI ACGGA 1 cut(s) 558
Tth111I GACNNNGTC 1 cut(s) 1238
VpaK11BI GGWCC 3 cut(s) 160, 311, 1138
VspI ATTAAT 2 cut(s) 29, 63
XapI RAATTY 1 cut(s) 1154
XceI RCATGY 2 cut(s) 528, 1282
XcmI CCANNNNNNNNNTGG 1 cut(s) 774
XmaJI CCTAGG 1 cut(s) 1273
XmiI GTMKAC 1 cut(s) 558
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 3 cut(s) 581, 1022, 1274
ZraI GACGTC 1 cut(s) 724
Zsp2I ATGCAT 2 cut(s) 530, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.