Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002409

Physical Location & Seq

Genomic Coordinates Forward (+)

60658084 .. 60660418

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAGAGAATGAAGGGGATGCTAGGCTCATTCCAAGGGACAACAATTAAACATATCGTTGGAGAGGTGTTGGCTCGTTTAGAACAGCGAGATGAAGGCAAGCATGGGGAGTGGCAAGATCAATTTAAGTTCAGTGCCGACCTTAATGTTTGCATGGGTAGAAAGATGAATCCCCCACTCAAAGTCCAATCAAAATATTCATTTAGCCCAGATGGTCCTCCGAAGCCGGCTAAGCGATCAATAAAGGAAAAGAAACTAAGGGCTGTCGGGGTGCAGTCAATGCATATACAGAAGGCTCTCTTCAAAACACGAGGAAGAACATATGGCAAGCAAACAAGAGCGGAACTTAAGGATGATGAAAAACAAGAGGAACAAGGTCTTCGTTGCCTATTCAACGTCAAAGCAAATACTCCAAAGGAGGACATCGAGTTGTTGACTTTCATTGGGTTTAGTAAGAAGCTAATTACAAATCTTCAAATGAGATATTGCAATGTCACAGTAGCTAAACATGGGGGAGTGATTGTATCAAGAGCCGACATGCAATGCCTACTGCCTGGTCAACTTTTGAGCGACTATGCACGTCCTCTATTTCCCATACAATTAGCATTGCATGCAAAAACTGCACCTGATGATGATAGGACTTCATTACGTGAGGAAGTTGCAAGAATGGCGATGAAGATGCTAGACAATGTTTTTGGTGATGATATTAGGGAGGAAATGGGAGTGCTACCTCATTTTACTGATCTTCCATTCATGGATAAGCACAACCACCCGGTTCAAAGAAACTCGTTCGACTGTGGTGTGTTTGTAATAAGAAACATGCAGCATTATGGCACACAATGGAATGAGGATTATGTTTCAGATGAGCACCGCCCAAATTTGGTCCTTGAGTGTGTCAATCACCCTCGCAATGAGGTGGTAAATGTAAGAGAAATGGTGGCAGATTGTTTGTCGCAACGAGGGGGAGATGCAGTAGATGGAATGTGTAGCACTAGGGTTGGTGAGGCTCGTCACATGATGACCAGTGGTGGCATGACAATGGATGTTGATCCCATGGACGAGAGAAGAGGTTACTTGGGTAATGGAAACAAGCATGAATTTTGCAATCTGTGTTCAAGTTGCACATCTGACCTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

379

Amino Acids

43.04

Weight (kDa)

7.97

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002409)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002091 RLG00000004454 RLG00000033140 RLG00000033141 RLG00000033142
rosa_multiflora	Rmu_sc0000077.1_g000043 Rmu_sc0000361.1_g000004 Rmu_sc0002048.1_g000017 Rmu_sc0007180.1_g000005 Rmu_sc0007223.1_g000007 Rmu_sc0008769.1_g000009
rosa_roxburghii	Rroxscaffold_2G00118160 Rroxscaffold_2G00118170 Rroxscaffold_2G00125280 Rroxscaffold_3G00237010 Rroxscaffold_5G00349960 Rroxscaffold_5G00349970 Rroxscaffold_5G00362900 Rroxscaffold_7G00197790 Rroxscaffold_7G00197870
rosa_rugosa	Rorug07G0208000
rosa_samantha	Rh1BG098800 Rh1CG156600 Rh2DG571500 Rh4AG336300 Rh4BG133300 Rh4BG219500 Rh4DG120500 Rh4DG338800 Rh5DG299800 Rh6AG195900 Rh6BG101300 Rh6BG101400 Rh6BG101500 Rh6CG173400 Rh6CG200800 Rh7AG275000 Rh7DG346800
rosa_wichuraiana	Rw4G010230 Rw5G035120 Rw6G007570 Rw6G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	341
AciI	CCGC	2 cut(s)	341, 871
AclWI	GGATC	1 cut(s)	1043
AcsI	RAATTY	2 cut(s)	877, 1097
AfiI	CCNNNNNNNGG	1 cut(s)	880
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	5 cut(s)	304, 394, 476, 779, 1116
AjiI	CACGTC	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	2 cut(s)	460, 503
AluI	AGCT	2 cut(s)	460, 503
Alw21I	GWGCWC	1 cut(s)	870
AlwI	GGATC	1 cut(s)	1043
ApeKI	GCWGC	1 cut(s)	823
ApoI	RAATTY	2 cut(s)	877, 1097
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
AspS9I	GGNCC	2 cut(s)	215, 883
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	3 cut(s)	710, 893, 1013
AvaII	GGWCC	2 cut(s)	215, 883
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	1 cut(s)	835
BccI	CCATC	2 cut(s)	206, 971
BcgI	CGANNNNNNTGC	2 cut(s)	661, 695
BciT130I	CCWGG	1 cut(s)	555
BcnI	CCSGG	1 cut(s)	773
BfaI	CTAG	3 cut(s)	23, 683, 993
BfmI	CTRYAG	1 cut(s)	1133
BfrI	CTTAAG	1 cut(s)	347
BisI	GCNGC	1 cut(s)	824
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	825
Bme1390I	CCNGG	2 cut(s)	555, 773
Bme18I	GGWCC	2 cut(s)	215, 883
BmgBI	CACGTC	1 cut(s)	581
BmgT120I	GGNCC	2 cut(s)	215, 883
BmrFI	CCNGG	2 cut(s)	555, 773
BmsI	GCATC	3 cut(s)	9, 669, 958
BpiI	GAAGAC	1 cut(s)	371
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	908
BpuMI	CCSGG	1 cut(s)	773
BsaAI	YACGTR	1 cut(s)	650
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaJI	CCNNGG	2 cut(s)	34, 1053
BsaXI	ACNNNNNCTCC	4 cut(s)	507, 537, 957, 987
Bsc4I	CCNNNNNNNGG	1 cut(s)	880
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	1023
Bse3DI	GCAATG	4 cut(s)	496, 548, 605, 916
Bse8I	GATNNNNATC	1 cut(s)	1047
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	34, 1053
BseGI	GGATG	3 cut(s)	24, 358, 1048
BseJI	GATNNNNATC	1 cut(s)	1047
BseLI	CCNNNNNNNGG	1 cut(s)	880
BseMI	GCAATG	4 cut(s)	496, 548, 605, 916
BseNI	ACTGG	1 cut(s)	1023
BseXI	GCAGC	1 cut(s)	835
BsgI	GTGCAG	2 cut(s)	293, 606
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	2 cut(s)	227, 773
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	880
BsmFI	GGGAC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp143I	GATC	4 cut(s)	118, 236, 742, 1048
Bsp1720I	GCTNAGC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	1053
BspACI	CCGC	2 cut(s)	341, 871
BspMAI	CTGCAG	1 cut(s)	1137
BspPI	GGATC	1 cut(s)	1043
BspTI	CTTAAG	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	341
BsrDI	GCAATG	4 cut(s)	496, 548, 605, 916
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	1023
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	34, 1053
BssMI	GATC	4 cut(s)	118, 236, 742, 1048
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	2 cut(s)	34, 1053
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	499, 797
Bst6I	CTCTTC	2 cut(s)	305, 1060
BstAFI	CTTAAG	1 cut(s)	347
BstAPI	GCANNNNNTGC	3 cut(s)	280, 611, 620
BstBAI	YACGTR	1 cut(s)	650
BstC8I	GCNNGC	4 cut(s)	101, 228, 329, 612
BstDEI	CTNAG	2 cut(s)	231, 257
BstDSI	CCRYGG	1 cut(s)	1053
BstF5I	GGATG	3 cut(s)	24, 358, 1048
BstKTI	GATC	4 cut(s)	121, 239, 745, 1051
BstMBI	GATC	4 cut(s)	118, 236, 742, 1048
BstMWI	GCNNNNNNNGC	5 cut(s)	232, 280, 611, 620, 668
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	3 cut(s)	541, 614, 823
BstSCI	CCNGG	2 cut(s)	553, 771
BstSFI	CTRYAG	1 cut(s)	1133
BstV1I	GCAGC	1 cut(s)	835
BstV2I	GAAGAC	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	1053
BtgZI	GCGATG	1 cut(s)	686
BtrI	CACGTC	1 cut(s)	581
BtsCI	GGATG	3 cut(s)	24, 358, 1048
BtsIMutI	CAGTG	2 cut(s)	139, 1030
Cac8I	GCNNGC	4 cut(s)	101, 228, 329, 612
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	215, 883
DdeI	CTNAG	2 cut(s)	231, 257
DpnI	GATC	4 cut(s)	120, 238, 744, 1050
DpnII	GATC	4 cut(s)	118, 236, 742, 1048
Eam1104I	CTCTTC	2 cut(s)	305, 1060
EarI	CTCTTC	2 cut(s)	305, 1060
Eco130I	CCWWGG	2 cut(s)	34, 1053
Eco47I	GGWCC	2 cut(s)	215, 883
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	34, 1053
EcoT22I	ATGCAT	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	34, 1053
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	824
FokI	GGATG	3 cut(s)	31, 365, 1055
Fsp4HI	GCNGC	1 cut(s)	824
FspBI	CTAG	3 cut(s)	23, 683, 993
GluI	GCNGC	1 cut(s)	824
HapII	CCGG	2 cut(s)	227, 773
HincII	GTYRAC	2 cut(s)	435, 560
HindII	GTYRAC	2 cut(s)	435, 560
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	227, 773
HphI	GGTGA	3 cut(s)	710, 893, 1013
Hpy166II	GTNNAC	2 cut(s)	435, 560
Hpy188I	TCNGA	3 cut(s)	222, 862, 1129
Hpy188III	TCNNGA	1 cut(s)	528
Hpy8I	GTNNAC	2 cut(s)	435, 560
HpyAV	CCTTC	3 cut(s)	7, 89, 286
HpyCH4III	ACNGT	2 cut(s)	499, 797
HpyCH4IV	ACGT	3 cut(s)	396, 580, 649
HpyF10VI	GCNNNNNNNGC	5 cut(s)	232, 280, 611, 620, 668
HpyF3I	CTNAG	2 cut(s)	231, 257
HpySE526I	ACGT	3 cut(s)	396, 580, 649
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	118, 236, 742, 1048
LpnPI	CCDG	7 cut(s)	222, 240, 540, 567, 639, 786, 1036
Lsp1109I	GCAGC	1 cut(s)	835
LweI	GCATC	3 cut(s)	9, 669, 958
MaeI	CTAG	3 cut(s)	23, 683, 993
MaeII	ACGT	3 cut(s)	396, 580, 649
MaeIII	GTNAC	3 cut(s)	493, 1010, 1070
MalI	GATC	4 cut(s)	120, 238, 744, 1050
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	4 cut(s)	118, 236, 742, 1048
MboII	GAAGA	7 cut(s)	292, 327, 371, 464, 688, 737, 1077
MhlI	GDGCHC	1 cut(s)	870
MluCI	AATT	6 cut(s)	45, 122, 462, 599, 877, 1097
MmeI	TCCRAC	1 cut(s)	40
Mph1103I	ATGCAT	1 cut(s)	285
MroNI	GCCGGC	1 cut(s)	226
MseI	TTAA	4 cut(s)	48, 126, 144, 348
MslI	CAYNNNNRTG	1 cut(s)	1037
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	227, 773
MspR9I	CCNGG	2 cut(s)	555, 773
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	5 cut(s)	232, 280, 611, 620, 668
NaeI	GCCGGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	773
NcoI	CCATGG	1 cut(s)	1053
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	4 cut(s)	118, 236, 742, 1048
NgoMIV	GCCGGC	1 cut(s)	226
NmuCI	GTSAC	2 cut(s)	493, 1010
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	3 cut(s)	541, 614, 823
PaeI	GCATGC	1 cut(s)	614
PdiI	GCCGGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	825
Ppu21I	YACGTR	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspPI	GGNCC	2 cut(s)	215, 883
PstI	CTGCAG	1 cut(s)	1137
RseI	CAYNNNNRTG	1 cut(s)	1037
SaqAI	TTAA	4 cut(s)	48, 126, 144, 348
SatI	GCNGC	1 cut(s)	824
Sau3AI	GATC	4 cut(s)	118, 236, 742, 1048
Sau96I	GGNCC	2 cut(s)	215, 883
ScrFI	CCNGG	2 cut(s)	555, 773
SduI	GDGCHC	1 cut(s)	870
SfaNI	GCATC	3 cut(s)	9, 669, 958
SfcI	CTRYAG	1 cut(s)	1133
SinI	GGWCC	2 cut(s)	215, 883
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SmlI	CTYRAG	2 cut(s)	347, 887
SmoI	CTYRAG	2 cut(s)	347, 887
SphI	GCATGC	1 cut(s)	614
Sse9I	AATT	6 cut(s)	45, 122, 462, 599, 877, 1097
SsiI	CCGC	2 cut(s)	341, 871
SspI	AATATT	1 cut(s)	197
SspMI	CTAG	3 cut(s)	23, 683, 993
StyD4I	CCNGG	2 cut(s)	553, 771
StyI	CCWWGG	2 cut(s)	34, 1053
TaaI	ACNGT	2 cut(s)	499, 797
TaiI	ACGT	3 cut(s)	399, 583, 652
TaqI	TCGA	2 cut(s)	426, 792
TasI	AATT	6 cut(s)	45, 122, 462, 599, 877, 1097
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	4 cut(s)	48, 126, 144, 348
Tru9I	TTAA	4 cut(s)	48, 126, 144, 348
TscAI	CASTG	2 cut(s)	139, 1030
TseFI	GTSAC	2 cut(s)	493, 1010
TseI	GCWGC	1 cut(s)	823
Tsp45I	GTSAC	2 cut(s)	493, 1010
TspRI	CASTG	2 cut(s)	139, 1030
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	215, 883
XapI	RAATTY	2 cut(s)	877, 1097
XceI	RCATGY	3 cut(s)	541, 614, 823
XspI	CTAG	3 cut(s)	23, 683, 993
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.