Rh6BG101300

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002409
Physical Location & Seq
Reverse (-)
15835764 .. 15837381
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG101300.1

Sequence Viewer

Length: 687 bp
ATGAGATATTACAATGTCACAGTAGCTAAACATGGGGGAGTGATTGTATCAAGAGCCGACATGCAATGCCTACTGCCTGGTCAACTTTTGAGCGACTATGTCATCAACATGTTTGCAACCTACCTTAATGAAGATGGGGTTGGGGATTGCTCTAATGTGAAAAATATTCAGATGACCAGAATGGAATGGATCGAACACACCTGTCGCGTTAGCATGTTGGATAGATTCAAGGGGAAATTCAGGATGTGCAGAAGGATATACATTCCTCTGCGCGATCCTGCATCTGAGGGGCATTGGTATTTGTTGGTGTTGCACAAAGACTCCAGATTTGGGGAAATCGTTGACAGTGCACCTGATGATGATAGGACTTCATTCCGTGAGGAAGTTGCAAGAATGGCATATGTTTCAGATGAGCACCGCGCAAATTTGGTCCTTGAGTGTGTCAATCACCCTCGCAATGAGGTGGTAAATGTAAGAGAAATGGTGGCAGATTGTTTGTCGCAACGAGGGGGAGATGCGGTAGATGGAATGTGTAGCACTAGGGTTGGTGAGGCTCGTCACATGATGAACAGTGGTGGCATGACAATGGATGTTGATCCCATGGACAAGAGAAGAGGTTACTTGGGTAATGGAAACAAGCATGAATTTTGTAATCTGTGTTCAAGTTGCACATCTGACCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 Peptidase_C48

Protein Analysis

228

Amino Acids

25.98

Weight (kDa)

6.06

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 207, 273, 420
AciI CCGC 2 cut(s) 418, 518
AclWI GGATC 3 cut(s) 197, 269, 590
AcsI RAATTY 3 cut(s) 236, 424, 644
AfiI CCNNNNNNNGG 1 cut(s) 330
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 2 cut(s) 229, 663
AjnI CCWGG 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw21I GWGCWC 2 cut(s) 352, 417
Alw44I GTGCAC 1 cut(s) 348
AlwI GGATC 3 cut(s) 197, 269, 590
ApaLI GTGCAC 1 cut(s) 348
ApoI RAATTY 3 cut(s) 236, 424, 644
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspLEI GCGC 2 cut(s) 273, 422
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 2 cut(s) 440, 560
AvaII GGWCC 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 352
Bbv12I GWGCWC 2 cut(s) 352, 417
BccI CCATC 2 cut(s) 128, 518
BciT130I CCWGG 1 cut(s) 78
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 680
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 430
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 290, 505
BpmI CTGGAG 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 600
BsaXI ACNNNNNCTCC 6 cut(s) 30, 60, 305, 335, 504, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse3DI GCAATG 2 cut(s) 71, 463
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 2 cut(s) 249, 595
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMI GCAATG 2 cut(s) 71, 463
BseMII CTCAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 352
BsgI GTGCAG 1 cut(s) 268
Bsh1236I CGCG 3 cut(s) 207, 273, 420
BsiHKAI GWGCWC 2 cut(s) 352, 417
BslI CCNNNNNNNGG 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 352, 417
Bsp143I GATC 3 cut(s) 189, 274, 595
Bsp19I CCATGG 1 cut(s) 600
BspACI CCGC 2 cut(s) 418, 518
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 3 cut(s) 207, 273, 420
BspMAI CTGCAG 1 cut(s) 684
BspPI GGATC 3 cut(s) 197, 269, 590
BsrDI GCAATG 2 cut(s) 71, 463
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 3 cut(s) 189, 274, 595
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 3 cut(s) 22, 347, 572
Bst6I CTCTTC 1 cut(s) 607
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 600
BstF5I GGATG 2 cut(s) 249, 595
BstFNI CGCG 3 cut(s) 207, 273, 420
BstHHI GCGC 2 cut(s) 273, 422
BstKTI GATC 3 cut(s) 192, 277, 598
BstMBI GATC 3 cut(s) 189, 274, 595
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 3 cut(s) 64, 112, 217
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 680
BstSLI GKGCMC 1 cut(s) 352
BstUI CGCG 3 cut(s) 207, 273, 420
BtgI CCRYGG 1 cut(s) 600
BtsCI GGATG 2 cut(s) 249, 595
BtsIMutI CAGTG 2 cut(s) 352, 577
CfoI GCGC 2 cut(s) 273, 422
Cfr13I GGNCC 1 cut(s) 430
CviAII CATG 8 cut(s) 32, 61, 109, 214, 562, 580, 601, 641
CviJI RGCY 3 cut(s) 26, 56, 554
CviKI_1 RGCY 3 cut(s) 26, 56, 554
DdeI CTNAG 1 cut(s) 285
DpnI GATC 3 cut(s) 191, 276, 597
DpnII GATC 3 cut(s) 189, 274, 595
Eam1104I CTCTTC 1 cut(s) 607
EarI CTCTTC 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 8 cut(s) 35, 64, 112, 217, 565, 583, 604, 644
FatI CATG 8 cut(s) 31, 60, 108, 213, 561, 579, 600, 640
FauNDI CATATG 1 cut(s) 400
FokI GGATG 2 cut(s) 256, 602
FspBI CTAG 1 cut(s) 540
GlaI GCGC 2 cut(s) 272, 421
GsuI CTGGAG 1 cut(s) 307
HhaI GCGC 2 cut(s) 273, 422
Hin1II CATG 8 cut(s) 35, 64, 112, 217, 565, 583, 604, 644
Hin6I GCGC 2 cut(s) 271, 420
HinP1I GCGC 2 cut(s) 271, 420
HincII GTYRAC 2 cut(s) 83, 343
HindII GTYRAC 2 cut(s) 83, 343
HinfI GANTC 2 cut(s) 225, 320
HphI GGTGA 2 cut(s) 440, 560
Hpy166II GTNNAC 3 cut(s) 83, 343, 350
Hpy188I TCNGA 4 cut(s) 171, 286, 409, 676
Hpy188III TCNNGA 3 cut(s) 51, 241, 324
Hpy8I GTNNAC 3 cut(s) 83, 343, 350
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 3 cut(s) 22, 347, 572
HpyCH4V TGCA 9 cut(s) 64, 116, 249, 281, 313, 350, 389, 669, 682
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 8 cut(s) 35, 64, 112, 217, 565, 583, 604, 644
HspAI GCGC 2 cut(s) 271, 420
Kzo9I GATC 3 cut(s) 189, 274, 595
LpnPI CCDG 8 cut(s) 63, 90, 190, 214, 226, 291, 337, 366
LweI GCATC 2 cut(s) 290, 505
MaeI CTAG 1 cut(s) 540
MaeIII GTNAC 3 cut(s) 16, 557, 617
MalI GATC 3 cut(s) 191, 276, 597
MboI GATC 3 cut(s) 189, 274, 595
MboII GAAGA 2 cut(s) 143, 624
MhlI GDGCHC 2 cut(s) 352, 417
MluCI AATT 3 cut(s) 236, 424, 644
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 8 cut(s) 276, 280, 373, 454, 462, 500, 544, 608
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 107, 584
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 3 cut(s) 207, 273, 420
MwoI GCNNNNNNNGC 1 cut(s) 395
NcoI CCATGG 1 cut(s) 600
NdeI CATATG 1 cut(s) 400
NdeII GATC 3 cut(s) 189, 274, 595
NlaIII CATG 8 cut(s) 35, 64, 112, 217, 565, 583, 604, 644
NmuCI GTSAC 2 cut(s) 16, 557
NspI RCATGY 3 cut(s) 64, 112, 217
PciI ACATGT 1 cut(s) 108
PfeI GAWTC 1 cut(s) 225
PflFI GACNNNGTC 1 cut(s) 98
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
PscI ACATGT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspPI GGNCC 1 cut(s) 430
PsrI GAACNNNNNNTAC 2 cut(s) 643, 675
PstI CTGCAG 1 cut(s) 684
PsyI GACNNNGTC 1 cut(s) 98
RseI CAYNNNNRTG 2 cut(s) 107, 584
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 3 cut(s) 189, 274, 595
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 352, 417
SetI ASST 8 cut(s) 28, 122, 126, 203, 355, 465, 619, 681
SfaNI GCATC 2 cut(s) 290, 505
SfcI CTRYAG 1 cut(s) 680
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 107, 584
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 3 cut(s) 236, 424, 644
SsiI CCGC 2 cut(s) 418, 518
SspI AATATT 1 cut(s) 166
SspMI CTAG 1 cut(s) 540
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 3 cut(s) 22, 347, 572
TaqI TCGA 1 cut(s) 192
TasI AATT 3 cut(s) 236, 424, 644
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 352, 577
TseFI GTSAC 2 cut(s) 16, 557
Tsp45I GTSAC 2 cut(s) 16, 557
TspDTI ATGAA 4 cut(s) 144, 360, 581, 657
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 2 cut(s) 352, 577
Tth111I GACNNNGTC 1 cut(s) 98
VneI GTGCAC 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 3 cut(s) 236, 424, 644
XceI RCATGY 3 cut(s) 64, 112, 217
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.