Rw6G007570

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002409
Physical Location & Seq
Reverse (-)
12422885 .. 12426060
3176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007570.1

Sequence Viewer

Length: 1947 bp
ATGGACCAAGCAAATGTCGTCTCCAGTATCGGCTTCGGGGAGTTACATCACCTGGGATGCAACACAATATTTGACACGGTATGTGAGATGATGCTTAATAGTATTGATCCTCTAAATGAGATTGTGTTGATACATGGCAAGGAAATACCCTTTGGACCCACAGATTTTGCACGTGTCATGGGCATAAAGGATGGTGGATTAGACATTCAGAAGATGGGAGATACGAACGAAAGTCTTGTTAGGTTAATTAGGAAACAATTAGGGGGTGGAGAAGGTGGACTACACATTGCAAGTTTGAAGAAATGTATCATGGAAAGTACACGGGCTGATGAAATATTCAAGATAGCTTATGCACTTTATGCGGTCGCATGCGTTTTATGTCCCAACGGAACCAATTTGGTCGACCAGTCATTGATTTCTACTCTAGTAGAGACGAACATGATAAAGGATCTGAATTGGGCAATGTTCTGCTACTATAAGATATGGGTTGACAAAGGAATCACTCCAATCACTGCATGGAACACTACTTTAGTGAAGAAATTGATTATGTGGGTAGAACAAAATGGGGGAGTCACCAACACAAACCAGAATGTTTGGAGGAGACAACCTATAATCCATGAGAAGGAGTCTGATGCAAATGGGAAAATATATGATGCAAAACAAATATTGTTGAGTGTAGAAGGCCTGCATAAAAGGGTTTCTAATATGGAACAAAAAGAAAGTCGGCTGACAGAATCAATGGAGAGAATGGAGAGGATGCTAGGCTCATTCCAAGGGGCAACAATTAAACACATCGTTGGAGAGGTGTTGGCTCGTTTAGAACAGCGAGATGAAGGCAAGCATGGGGAGTGCCAAGATCAATTTAAGTTCAGAGCCGACCTTAATGTGCATGAATTCAGAGGCTCAGAGGCACAGTCTAATGATCCATCAAGACTATTGAAGGGCAAAAATATTTGCATGAACCCCCTGCCAGACGAGGTTTGCATGGCTAGAAAGATGAATCCCCCGCTCAAAGTCCAATCAAAATGTTCATTTAGCCCAGATGGTCCTCCGAAGCCGGCTAAGCGATCAATAAAGGAAAAGAAACTAAGGGGTGTCGGGGTGCAGTCAATGCATACACGGAAGGCTCTTTTCAAAACACGAGGAAGAACATATGGCAAGCAAACAAGAGTGGAACTGAAGGATGATGAAAAACAAGAGGAACAAGGTCTTCGTTGCCTATTTAACGTCAAAGCAAATACTCCAAAGGAGAACATCGAGTTGTTGACTTTCATTGGGTTTATAGCTAAACATGGGGGAGTGATTGTAGCAAGAGCCGACATGCAATGCCTACTGCCTGGTCAACTTTTGAGCGACTATGTCATCAACATGTTTACAAGCTACCTTAATGAAGATGGGTTTGGGGATTGCTCTAATGTGAAAAATATTCAGATGACCATAATGGAATGGATCGAACACACCTGTCGCGTTAGCATGTTGGATAGATTCAAGGGGAAATTCAGGATGTGCATAAGGATATACATTCCTCTACGCGATCCTGCATCTGAGGGGCATTGGTATTTGTTGGTGGTGCACAAAGACTCCAGATTTGGGGAAATCGTTGACAGTGCGCCTGATGATGATAGGACTTCATTCCATGAGGAAGTTGCAAGAATGGCGTATGTTTCAGATGAGCACCGCGCAAATTTGGTCCTTGAGTGTGTCAATCACCCTTGCAATGAGGTGGTAAATGTAAGAGAAATGGTGGCAGATTGTTTGTCGCAACGAGGGGGAGATGCGGTAGATGGAATGTGTAGCACTAGGGTTGGTGAGGCTCGTCACATGATTACCAGTGGTGGCATGACAATGGATGTTGATCCCATGGACGAGAGAAGAGGTTACTTGGGTAATGGAAACAAGCATGAATTTTGTAATCTGTGTTCAAGTTGCACATCTGACCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 Peptidase_C48

Protein Analysis

648

Amino Acids

73.03

Weight (kDa)

6.57

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1009
AccI GTMKAC 1 cut(s) 402
AccII CGCG 3 cut(s) 1467, 1533, 1680
AciI CCGC 4 cut(s) 362, 1007, 1678, 1778
AclWI GGATC 6 cut(s) 101, 456, 917, 1457, 1529, 1850
AcsI RAATTY 4 cut(s) 893, 1496, 1684, 1904
AcuI CTGAAG 1 cut(s) 1199
AcvI CACGTG 1 cut(s) 173
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 2 cut(s) 622, 1590
AflIII ACRYGT 2 cut(s) 172, 1368
AgsI TTSAA 6 cut(s) 298, 340, 940, 1135, 1489, 1923
AjnI CCWGG 2 cut(s) 51, 1336
AjuI GAANNNNNNNTTGG 4 cut(s) 135, 167, 1383, 1415
AluBI AGCT 3 cut(s) 347, 1286, 1380
AluI AGCT 3 cut(s) 347, 1286, 1380
Alw21I GWGCWC 2 cut(s) 1575, 1677
Alw26I GTCTC 3 cut(s) 25, 425, 595
Alw44I GTGCAC 1 cut(s) 1571
AlwI GGATC 6 cut(s) 101, 456, 917, 1457, 1529, 1850
AoxI GGCC 1 cut(s) 682
ApaLI GTGCAC 1 cut(s) 1571
ApoI RAATTY 4 cut(s) 893, 1496, 1684, 1904
ArsI GACNNNNNNTTYG 4 cut(s) 706, 738, 1571, 1603
AspLEI GCGC 2 cut(s) 1612, 1682
AspS9I GGNCC 4 cut(s) 4, 155, 1046, 1690
AsuHPI GGTGA 4 cut(s) 41, 565, 1700, 1820
AvaII GGWCC 4 cut(s) 4, 155, 1046, 1690
BaeGI GKGCMC 1 cut(s) 1575
BarI GAAGNNNNNNTAC 2 cut(s) 264, 296
BauI CACGAG 1 cut(s) 1140
BbrPI CACGTG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 1202
Bbv12I GWGCWC 2 cut(s) 1575, 1677
BccI CCATC 6 cut(s) 185, 208, 934, 1037, 1388, 1778
BciT130I CCWGG 2 cut(s) 53, 1338
BcoDI GTCTC 3 cut(s) 25, 425, 595
BfaI CTAG 4 cut(s) 425, 761, 990, 1800
BfmI CTRYAG 1 cut(s) 1940
BlpI GCTNAGC 1 cut(s) 1062
Bme1390I CCNGG 2 cut(s) 53, 1338
Bme18I GGWCC 4 cut(s) 4, 155, 1046, 1690
BmgT120I GGNCC 4 cut(s) 4, 155, 1046, 1690
BmiI GGNNCC 2 cut(s) 157, 391
BmrFI CCNGG 2 cut(s) 53, 1338
BmsI GCATC 7 cut(s) 47, 81, 622, 643, 747, 1550, 1765
BpiI GAAGAC 1 cut(s) 1202
BpmI CTGGAG 2 cut(s) 7, 1567
Bpu1102I GCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 1 cut(s) 1715
BsaAI YACGTR 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 1854
BsaJI CCNNGG 3 cut(s) 52, 772, 1860
BsaXI ACNNNNNCTCC 6 cut(s) 1290, 1320, 1565, 1595, 1764, 1794
Bsc4I CCNNNNNNNGG 2 cut(s) 622, 1590
Bse118I RCCGGY 1 cut(s) 1057
Bse1I ACTGG 3 cut(s) 24, 406, 1830
Bse3DI GCAATG 4 cut(s) 285, 468, 1331, 1723
Bse8I GATNNNNATC 1 cut(s) 1854
BseBI CCWGG 2 cut(s) 53, 1338
BseDI CCNNGG 3 cut(s) 52, 772, 1860
BseGI GGATG 6 cut(s) 62, 196, 762, 1189, 1509, 1855
BseJI GATNNNNATC 1 cut(s) 1854
BseLI CCNNNNNNNGG 2 cut(s) 622, 1590
BseMI GCAATG 4 cut(s) 285, 468, 1331, 1723
BseMII CTCAG 2 cut(s) 918, 1536
BseNI ACTGG 3 cut(s) 24, 406, 1830
BseRI GAGGAG 1 cut(s) 613
BseSI GKGCMC 1 cut(s) 1575
BsgI GTGCAG 1 cut(s) 1124
Bsh1236I CGCG 3 cut(s) 1467, 1533, 1680
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 684
BsiEI CGRYCG 1 cut(s) 366
BsiHKAI GWGCWC 2 cut(s) 1575, 1677
BsiSI CCGG 1 cut(s) 1058
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 622, 1590
BsmAI GTCTC 3 cut(s) 25, 425, 595
BsmBI CGTCTC 2 cut(s) 25, 425
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 1 cut(s) 684
Bsp1286I GDGCHC 2 cut(s) 1575, 1677
Bsp143I GATC 8 cut(s) 106, 448, 856, 922, 1067, 1449, 1534, 1855
Bsp1720I GCTNAGC 1 cut(s) 1062
Bsp19I CCATGG 1 cut(s) 1860
BspACI CCGC 4 cut(s) 362, 1007, 1678, 1778
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 2 cut(s) 917, 1537
BspFNI CGCG 3 cut(s) 1467, 1533, 1680
BspLI GGNNCC 2 cut(s) 157, 391
BspMAI CTGCAG 1 cut(s) 1944
BspPI GGATC 6 cut(s) 101, 456, 917, 1457, 1529, 1850
BsrBI CCGCTC 1 cut(s) 1009
BsrDI GCAATG 4 cut(s) 285, 468, 1331, 1723
BsrFI RCCGGY 1 cut(s) 1057
BsrI ACTGG 3 cut(s) 24, 406, 1830
BssAI RCCGGY 1 cut(s) 1057
BssECI CCNNGG 3 cut(s) 52, 772, 1860
BssMI GATC 8 cut(s) 106, 448, 856, 922, 1067, 1449, 1534, 1855
BssSI CACGAG 1 cut(s) 1140
BssT1I CCWWGG 2 cut(s) 772, 1860
Bst2BI CACGAG 1 cut(s) 1140
Bst2UI CCWGG 2 cut(s) 53, 1338
Bst4CI ACNGT 3 cut(s) 79, 915, 1607
Bst6I CTCTTC 1 cut(s) 1867
BstAPI GCANNNNNTGC 2 cut(s) 359, 1111
BstBAI YACGTR 1 cut(s) 173
BstC8I GCNNGC 5 cut(s) 370, 686, 839, 1059, 1160
BstDEI CTNAG 4 cut(s) 904, 1062, 1088, 1545
BstDSI CCRYGG 1 cut(s) 1860
BstF5I GGATG 6 cut(s) 62, 196, 762, 1189, 1509, 1855
BstFNI CGCG 3 cut(s) 1467, 1533, 1680
BstHHI GCGC 2 cut(s) 1612, 1682
BstKTI GATC 8 cut(s) 109, 451, 859, 925, 1070, 1452, 1537, 1858
BstMAI GTCTC 3 cut(s) 25, 425, 595
BstMBI GATC 8 cut(s) 106, 448, 856, 922, 1067, 1449, 1534, 1855
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 4 cut(s) 359, 1063, 1111, 1655
BstNI CCWGG 2 cut(s) 53, 1338
BstNSI RCATGY 4 cut(s) 372, 1324, 1372, 1477
BstSCI CCNGG 2 cut(s) 51, 1336
BstSFI CTRYAG 1 cut(s) 1940
BstSLI GKGCMC 1 cut(s) 1575
BstUI CGCG 3 cut(s) 1467, 1533, 1680
BstV2I GAAGAC 1 cut(s) 1202
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 1 cut(s) 684
BtgI CCRYGG 1 cut(s) 1860
BtsCI GGATG 6 cut(s) 62, 196, 762, 1189, 1509, 1855
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 3 cut(s) 510, 1612, 1837
Cac8I GCNNGC 5 cut(s) 370, 686, 839, 1059, 1160
CfoI GCGC 2 cut(s) 1612, 1682
Cfr10I RCCGGY 1 cut(s) 1057
Cfr13I GGNCC 4 cut(s) 4, 155, 1046, 1690
Csp6I GTAC 1 cut(s) 318
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 4 cut(s) 904, 1062, 1088, 1545
DpnI GATC 8 cut(s) 108, 450, 858, 924, 1069, 1451, 1536, 1857
DpnII GATC 8 cut(s) 106, 448, 856, 922, 1067, 1449, 1534, 1855
Eam1104I CTCTTC 1 cut(s) 1867
EarI CTCTTC 1 cut(s) 1867
Eco130I CCWWGG 2 cut(s) 772, 1860
Eco147I AGGCCT 1 cut(s) 684
Eco47I GGWCC 4 cut(s) 4, 155, 1046, 1690
Eco57I CTGAAG 1 cut(s) 1199
Eco72I CACGTG 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 893
EcoRII CCWGG 2 cut(s) 51, 1336
EcoT14I CCWWGG 2 cut(s) 772, 1860
EcoT22I ATGCAT 1 cut(s) 1116
ErhI CCWWGG 2 cut(s) 772, 1860
Esp3I CGTCTC 2 cut(s) 25, 425
FaqI GGGAC 1 cut(s) 366
FauI CCCGC 1 cut(s) 1014
FauNDI CATATG 1 cut(s) 1153
FblI GTMKAC 1 cut(s) 402
FokI GGATG 6 cut(s) 69, 203, 769, 1196, 1516, 1862
FspBI CTAG 4 cut(s) 425, 761, 990, 1800
GlaI GCGC 2 cut(s) 1611, 1681
GsuI CTGGAG 2 cut(s) 7, 1567
HaeIII GGCC 1 cut(s) 684
HapII CCGG 1 cut(s) 1058
HhaI GCGC 2 cut(s) 1612, 1682
Hin6I GCGC 2 cut(s) 1610, 1680
HinP1I GCGC 2 cut(s) 1610, 1680
HincII GTYRAC 5 cut(s) 403, 490, 1266, 1343, 1603
HindII GTYRAC 5 cut(s) 403, 490, 1266, 1343, 1603
HinfI GANTC 7 cut(s) 498, 570, 626, 734, 1000, 1485, 1580
HpaII CCGG 1 cut(s) 1058
HphI GGTGA 4 cut(s) 41, 565, 1700, 1820
Hpy166II GTNNAC 9 cut(s) 278, 320, 403, 490, 1266, 1343, 1374, 1573, 1603
Hpy188III TCNNGA 4 cut(s) 340, 930, 1501, 1584
Hpy8I GTNNAC 9 cut(s) 278, 320, 403, 490, 1266, 1343, 1374, 1573, 1603
HpyAV CCTTC 7 cut(s) 266, 616, 674, 827, 934, 1117, 1174
HpyCH4III ACNGT 3 cut(s) 79, 915, 1607
HpyCH4IV ACGT 2 cut(s) 172, 1227
HpyF10VI GCNNNNNNNGC 4 cut(s) 359, 1063, 1111, 1655
HpyF3I CTNAG 4 cut(s) 904, 1062, 1088, 1545
HpySE526I ACGT 2 cut(s) 172, 1227
HspAI GCGC 2 cut(s) 1610, 1680
KroI GCCGGC 1 cut(s) 1057
KroNI GCCGGC 1 cut(s) 1059
Kzo9I GATC 8 cut(s) 106, 448, 856, 922, 1067, 1449, 1534, 1855
LweI GCATC 7 cut(s) 47, 81, 622, 643, 747, 1550, 1765
MaeI CTAG 4 cut(s) 425, 761, 990, 1800
MaeII ACGT 2 cut(s) 172, 1227
MaeIII GTNAC 4 cut(s) 42, 571, 1817, 1877
MalI GATC 8 cut(s) 108, 450, 858, 924, 1069, 1451, 1536, 1857
MbiI CCGCTC 1 cut(s) 1009
MboI GATC 8 cut(s) 106, 448, 856, 922, 1067, 1449, 1534, 1855
MboII GAAGA 7 cut(s) 223, 310, 547, 1158, 1202, 1403, 1884
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 2 cut(s) 1575, 1677
MlyI GAGTC 3 cut(s) 579, 635, 1574
MmeI TCCRAC 2 cut(s) 778, 1458
Mph1103I ATGCAT 1 cut(s) 1116
MroNI GCCGGC 1 cut(s) 1057
MseI TTAA 7 cut(s) 96, 245, 786, 864, 882, 1224, 1386
MslI CAYNNNNRTG 2 cut(s) 1367, 1844
MspI CCGG 1 cut(s) 1058
MspR9I CCNGG 2 cut(s) 53, 1338
MvaI CCWGG 2 cut(s) 53, 1338
MvnI CGCG 3 cut(s) 1467, 1533, 1680
MwoI GCNNNNNNNGC 4 cut(s) 359, 1063, 1111, 1655
NaeI GCCGGC 1 cut(s) 1059
NcoI CCATGG 1 cut(s) 1860
NdeI CATATG 1 cut(s) 1153
NdeII GATC 8 cut(s) 106, 448, 856, 922, 1067, 1449, 1534, 1855
NgoMIV GCCGGC 1 cut(s) 1057
NlaIV GGNNCC 2 cut(s) 157, 391
NmuCI GTSAC 2 cut(s) 571, 1817
NsiI ATGCAT 1 cut(s) 1116
NspI RCATGY 4 cut(s) 372, 1324, 1372, 1477
PaeI GCATGC 1 cut(s) 372
PceI AGGCCT 1 cut(s) 684
PciI ACATGT 1 cut(s) 1368
PdiI GCCGGC 1 cut(s) 1059
PfeI GAWTC 4 cut(s) 498, 734, 1000, 1485
PflFI GACNNNGTC 1 cut(s) 1358
PleI GAGTC 3 cut(s) 578, 634, 1574
PmaCI CACGTG 1 cut(s) 173
PmlI CACGTG 1 cut(s) 173
PpsI GAGTC 3 cut(s) 578, 634, 1574
Ppu21I YACGTR 1 cut(s) 173
PscI ACATGT 1 cut(s) 1368
Psp6I CCWGG 2 cut(s) 51, 1336
PspCI CACGTG 1 cut(s) 173
PspGI CCWGG 2 cut(s) 51, 1336
PspN4I GGNNCC 2 cut(s) 157, 391
PspPI GGNCC 4 cut(s) 4, 155, 1046, 1690
PsrI GAACNNNNNNTAC 2 cut(s) 1903, 1935
PstI CTGCAG 1 cut(s) 1944
PsuI RGATCY 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 1358
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
RseI CAYNNNNRTG 2 cut(s) 1367, 1844
SalI GTCGAC 1 cut(s) 401
SaqAI TTAA 7 cut(s) 96, 245, 786, 864, 882, 1224, 1386
Sau3AI GATC 8 cut(s) 106, 448, 856, 922, 1067, 1449, 1534, 1855
Sau96I GGNCC 4 cut(s) 4, 155, 1046, 1690
SchI GAGTC 3 cut(s) 579, 635, 1574
ScrFI CCNGG 2 cut(s) 53, 1338
SduI GDGCHC 2 cut(s) 1575, 1677
SfaNI GCATC 7 cut(s) 47, 81, 622, 643, 747, 1550, 1765
SfcI CTRYAG 1 cut(s) 1940
SinI GGWCC 4 cut(s) 4, 155, 1046, 1690
SmiMI CAYNNNNRTG 2 cut(s) 1367, 1844
SmlI CTYRAG 1 cut(s) 1694
SmoI CTYRAG 1 cut(s) 1694
SphI GCATGC 1 cut(s) 372
SseBI AGGCCT 1 cut(s) 684
SsiI CCGC 4 cut(s) 362, 1007, 1678, 1778
SspI AATATT 5 cut(s) 69, 336, 666, 952, 1426
SspMI CTAG 4 cut(s) 425, 761, 990, 1800
StuI AGGCCT 1 cut(s) 684
StyD4I CCNGG 2 cut(s) 51, 1336
StyI CCWWGG 2 cut(s) 772, 1860
TaaI ACNGT 3 cut(s) 79, 915, 1607
TaiI ACGT 2 cut(s) 175, 1230
TaqI TCGA 3 cut(s) 402, 1257, 1452
TatI WGTACW 1 cut(s) 317
TfiI GAWTC 4 cut(s) 498, 734, 1000, 1485
Tru1I TTAA 7 cut(s) 96, 245, 786, 864, 882, 1224, 1386
Tru9I TTAA 7 cut(s) 96, 245, 786, 864, 882, 1224, 1386
TscAI CASTG 3 cut(s) 517, 1612, 1837
TseFI GTSAC 2 cut(s) 571, 1817
Tsp45I GTSAC 2 cut(s) 571, 1817
TspGWI ACGGA 2 cut(s) 402, 1135
TspRI CASTG 3 cut(s) 517, 1612, 1837
Tth111I GACNNNGTC 1 cut(s) 1358
VneI GTGCAC 1 cut(s) 1571
VpaK11BI GGWCC 4 cut(s) 4, 155, 1046, 1690
XapI RAATTY 4 cut(s) 893, 1496, 1684, 1904
XceI RCATGY 4 cut(s) 372, 1324, 1372, 1477
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 4 cut(s) 425, 761, 990, 1800
Zsp2I ATGCAT 1 cut(s) 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.