Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002409

Physical Location & Seq

Genomic Coordinates Forward (+)

64542092 .. 64543425

Gene Structure 1334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG336300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCACAATCGAACAAGAAACATTATTCAATCCCATTTGCTGAAATTGTGTCTTATATGCAGATATACATTCCTTTGCGCGATCCTGCATCTGAGGGGCATTGGTATTTGTTGGTGGTGCACAAAGACTCCAGATTTGGGGAAATCGTTGACAGTGCACCTGATGATGATAGGACTTCATTCCGTGAGGAAGTTGCAAGAATGGCGATGAAGATGCTAGACAGTGTTTTTGGTGATGATATTAGGGAGGAAATGGGACTGCTACCTCATTTTACTGATCTTCCATTCATGGATAAGCACAACCACCCGGTTCAAAGAAACTCGTTCGACTGTGGTGTGTTTGTAATAAGAAACATGCAGCATTATGGCACACAATGGAATGAGGATTATGTTTCAGATGAGCACCGCGCAAATTTGGTCCTTGAGTGTGTCAATCACCCTCGCAATAAGGTGGAAAATGTAAGAGAAATGGTGGCAGATTGTTTGTCGCAACGAGGGGGAGATGCGGTAGATGGAAACAAGCATGAATTTTGTAATCTGTGTTCAAGTTGCACATCTGACCTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

189

Amino Acids

21.83

Weight (kDa)

5.17

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	22 - 129	3.2e-10	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002409)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002091 RLG00000004454 RLG00000033140 RLG00000033141 RLG00000033142
rosa_multiflora	Rmu_sc0000077.1_g000043 Rmu_sc0000361.1_g000004 Rmu_sc0002048.1_g000017 Rmu_sc0007180.1_g000005 Rmu_sc0007223.1_g000007 Rmu_sc0008769.1_g000009
rosa_roxburghii	Rroxscaffold_2G00118160 Rroxscaffold_2G00118170 Rroxscaffold_2G00125280 Rroxscaffold_3G00237010 Rroxscaffold_5G00349960 Rroxscaffold_5G00349970 Rroxscaffold_5G00362900 Rroxscaffold_7G00197790 Rroxscaffold_7G00197870
rosa_rugosa	Rorug07G0208000
rosa_samantha	Rh1BG098800 Rh1CG156600 Rh2DG571500 Rh4AG336300 Rh4BG133300 Rh4BG219500 Rh4DG120500 Rh4DG338800 Rh5DG299800 Rh6AG195900 Rh6BG101300 Rh6BG101400 Rh6BG101500 Rh6CG173400 Rh6CG200800 Rh7AG275000 Rh7DG346800
rosa_wichuraiana	Rw4G010230 Rw5G035120 Rw6G007570 Rw6G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	81, 408
AciI	CCGC	2 cut(s)	406, 506
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	412, 527
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	30, 314, 546
Alw21I	GWGCWC	3 cut(s)	123, 160, 405
Alw44I	GTGCAC	2 cut(s)	119, 156
AlwI	GGATC	1 cut(s)	77
ApaLI	GTGCAC	2 cut(s)	119, 156
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	2 cut(s)	412, 527
ArsI	GACNNNNNNTTYG	4 cut(s)	119, 151, 212, 244
AspLEI	GCGC	2 cut(s)	81, 410
AspS9I	GGNCC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	245, 428
AvaII	GGWCC	1 cut(s)	418
BaeGI	GKGCMC	2 cut(s)	123, 160
Bbv12I	GWGCWC	3 cut(s)	123, 160, 405
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	1 cut(s)	506
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BcnI	CCSGG	1 cut(s)	308
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	563
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	3 cut(s)	98, 204, 493
BpmI	CTGGAG	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	308
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	84
BseSI	GKGCMC	2 cut(s)	123, 160
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	2 cut(s)	81, 408
BsiHKAI	GWGCWC	3 cut(s)	123, 160, 405
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	270
Bsp1286I	GDGCHC	3 cut(s)	123, 160, 405
Bsp143I	GATC	2 cut(s)	82, 277
BspACI	CCGC	2 cut(s)	406, 506
BspCNI	CTCAG	1 cut(s)	85
BspFNI	CGCG	2 cut(s)	81, 408
BspMAI	CTGCAG	1 cut(s)	567
BspPI	GGATC	1 cut(s)	77
BssMI	GATC	2 cut(s)	82, 277
Bst4CI	ACNGT	3 cut(s)	155, 224, 332
BstDEI	CTNAG	1 cut(s)	93
BstFNI	CGCG	2 cut(s)	81, 408
BstHHI	GCGC	2 cut(s)	81, 410
BstKTI	GATC	2 cut(s)	85, 280
BstMBI	GATC	2 cut(s)	82, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	563
BstSLI	GKGCMC	2 cut(s)	123, 160
BstUI	CGCG	2 cut(s)	81, 408
BstV1I	GCAGC	1 cut(s)	370
BtgZI	GCGATG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	160, 229
CfoI	GCGC	2 cut(s)	81, 410
Cfr13I	GGNCC	1 cut(s)	418
CviAII	CATG	3 cut(s)	289, 355, 524
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	84, 279
DpnII	GATC	2 cut(s)	82, 277
Eco47I	GGWCC	1 cut(s)	418
FaeI	CATG	3 cut(s)	292, 358, 527
FaiI	YATR	8 cut(s)	57, 59, 67, 290, 356, 366, 390, 525
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	3 cut(s)	288, 354, 523
Fnu4HI	GCNGC	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	2 cut(s)	80, 409
GluI	GCNGC	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	115
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	2 cut(s)	81, 410
Hin1II	CATG	3 cut(s)	292, 358, 527
Hin6I	GCGC	2 cut(s)	79, 408
HinP1I	GCGC	2 cut(s)	79, 408
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	2 cut(s)	245, 428
Hpy166II	GTNNAC	3 cut(s)	121, 151, 158
Hpy188I	TCNGA	3 cut(s)	94, 397, 559
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	3 cut(s)	121, 151, 158
HpyCH4III	ACNGT	3 cut(s)	155, 224, 332
HpyCH4V	TGCA	8 cut(s)	61, 89, 121, 158, 197, 358, 552, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	292, 358, 527
HspAI	GCGC	2 cut(s)	79, 408
Kzo9I	GATC	2 cut(s)	82, 277
LpnPI	CCDG	4 cut(s)	99, 145, 174, 321
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	3 cut(s)	98, 204, 493
MaeI	CTAG	1 cut(s)	218
MalI	GATC	2 cut(s)	84, 279
MboI	GATC	2 cut(s)	82, 277
MboII	GAAGA	2 cut(s)	223, 272
MhlI	GDGCHC	3 cut(s)	123, 160, 405
MluCI	AATT	3 cut(s)	45, 412, 527
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	7 cut(s)	88, 181, 241, 276, 376, 450, 488
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	308
MvnI	CGCG	2 cut(s)	81, 408
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	82, 277
NlaIII	CATG	3 cut(s)	292, 358, 527
NspI	RCATGY	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	418
PsrI	GAACNNNNNNTAC	2 cut(s)	526, 558
PstI	CTGCAG	1 cut(s)	567
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	2 cut(s)	82, 277
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	3 cut(s)	123, 160, 405
SetI	ASST	4 cut(s)	163, 268, 453, 564
SfaNI	GCATC	3 cut(s)	98, 204, 493
SfcI	CTRYAG	1 cut(s)	563
SinI	GGWCC	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	45, 412, 527
SsiI	CCGC	2 cut(s)	406, 506
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	155, 224, 332
TaqI	TCGA	2 cut(s)	11, 327
TasI	AATT	3 cut(s)	45, 412, 527
TscAI	CASTG	2 cut(s)	160, 229
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	168, 224, 277, 540
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	2 cut(s)	160, 229
VneI	GTGCAC	2 cut(s)	119, 156
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	2 cut(s)	412, 527
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.