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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 157 |
| AcuI | CTGAAG | 1 cut(s) | 332 |
| AfaI | GTAC | 1 cut(s) | 191 |
| AgsI | TTSAA | 4 cut(s) | 154, 295, 335, 362 |
| AluBI | AGCT | 3 cut(s) | 33, 302, 310 |
| AluI | AGCT | 3 cut(s) | 33, 302, 310 |
| AoxI | GGCC | 2 cut(s) | 8, 157 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 314, 346 |
| AspLEI | GCGC | 1 cut(s) | 206 |
| BalI | TGGCCA | 1 cut(s) | 159 |
| BccI | CCATC | 2 cut(s) | 43, 279 |
| BfaI | CTAG | 2 cut(s) | 213, 303 |
| BmiI | GGNNCC | 1 cut(s) | 73 |
| BmrI | ACTGGG | 1 cut(s) | 419 |
| BmsI | GCATC | 3 cut(s) | 306, 374, 405 |
| BmuI | ACTGGG | 1 cut(s) | 419 |
| BpmI | CTGGAG | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 1 cut(s) | 5 |
| Bse1I | ACTGG | 2 cut(s) | 179, 414 |
| BseDI | CCNNGG | 1 cut(s) | 5 |
| BseGI | GGATG | 2 cut(s) | 124, 290 |
| BseNI | ACTGG | 2 cut(s) | 179, 414 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| BshFI | GGCC | 2 cut(s) | 10, 159 |
| BsmI | GAATGC | 1 cut(s) | 256 |
| BsnI | GGCC | 2 cut(s) | 10, 159 |
| BspANI | GGCC | 2 cut(s) | 10, 159 |
| BspLI | GGNNCC | 1 cut(s) | 73 |
| BsrI | ACTGG | 2 cut(s) | 179, 414 |
| BssECI | CCNNGG | 1 cut(s) | 5 |
| Bst4CI | ACNGT | 2 cut(s) | 41, 240 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 393 |
| BstC8I | GCNNGC | 1 cut(s) | 31 |
| BstF5I | GGATG | 2 cut(s) | 124, 290 |
| BstHHI | GCGC | 1 cut(s) | 206 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 203, 316, 393 |
| BstNSI | RCATGY | 1 cut(s) | 258 |
| BsuRI | GGCC | 2 cut(s) | 10, 159 |
| BtsCI | GGATG | 2 cut(s) | 124, 290 |
| BtsIMutI | CAGTG | 3 cut(s) | 46, 245, 407 |
| Cac8I | GCNNGC | 1 cut(s) | 31 |
| CfoI | GCGC | 1 cut(s) | 206 |
| CseI | GACGC | 1 cut(s) | 83 |
| Csp6I | GTAC | 1 cut(s) | 190 |
| CviAII | CATG | 5 cut(s) | 88, 124, 233, 255, 355 |
| CviJI | RGCY | 7 cut(s) | 10, 33, 53, 74, 159, 302, 310 |
| CviKI_1 | RGCY | 7 cut(s) | 10, 33, 53, 74, 159, 302, 310 |
| CviQI | GTAC | 1 cut(s) | 190 |
| EaeI | YGGCCR | 1 cut(s) | 157 |
| Eco57I | CTGAAG | 1 cut(s) | 332 |
| EcoT22I | ATGCAT | 2 cut(s) | 256, 398 |
| FaeI | CATG | 5 cut(s) | 91, 127, 236, 258, 358 |
| FaiI | YATR | 9 cut(s) | 24, 89, 112, 125, 234, 256, 327, 356, 394 |
| FatI | CATG | 5 cut(s) | 87, 123, 232, 254, 354 |
| FokI | GGATG | 2 cut(s) | 131, 297 |
| FspBI | CTAG | 2 cut(s) | 213, 303 |
| GlaI | GCGC | 1 cut(s) | 205 |
| GsuI | CTGGAG | 1 cut(s) | 87 |
| HaeIII | GGCC | 2 cut(s) | 10, 159 |
| HgaI | GACGC | 1 cut(s) | 83 |
| HhaI | GCGC | 1 cut(s) | 206 |
| Hin1II | CATG | 5 cut(s) | 91, 127, 236, 258, 358 |
| Hin6I | GCGC | 1 cut(s) | 204 |
| HinP1I | GCGC | 1 cut(s) | 204 |
| HindIII | AAGCTT | 1 cut(s) | 31 |
| HinfI | GANTC | 2 cut(s) | 164, 291 |
| Hpy166II | GTNNAC | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 3 cut(s) | 85, 249, 373 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 184 |
| Hpy8I | GTNNAC | 1 cut(s) | 172 |
| Hpy99I | CGWCG | 1 cut(s) | 190 |
| HpyAV | CCTTC | 1 cut(s) | 56 |
| HpyCH4III | ACNGT | 2 cut(s) | 41, 240 |
| HpyCH4IV | ACGT | 1 cut(s) | 188 |
| HpyCH4V | TGCA | 4 cut(s) | 143, 254, 387, 396 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 203, 316, 393 |
| HpySE526I | ACGT | 1 cut(s) | 188 |
| Hsp92II | CATG | 5 cut(s) | 91, 127, 236, 258, 358 |
| HspAI | GCGC | 1 cut(s) | 204 |
| LmnI | GCTCC | 2 cut(s) | 71, 91 |
| LpnPI | CCDG | 4 cut(s) | 39, 117, 160, 395 |
| LweI | GCATC | 3 cut(s) | 306, 374, 405 |
| MaeI | CTAG | 2 cut(s) | 213, 303 |
| MaeII | ACGT | 1 cut(s) | 188 |
| MaeIII | GTNAC | 1 cut(s) | 215 |
| MboII | GAAGA | 2 cut(s) | 325, 347 |
| MlsI | TGGCCA | 1 cut(s) | 159 |
| MluNI | TGGCCA | 1 cut(s) | 159 |
| MlyI | GAGTC | 1 cut(s) | 158 |
| MmeI | TCCRAC | 1 cut(s) | 330 |
| MnlI | CCTC | 1 cut(s) | 236 |
| Mox20I | TGGCCA | 1 cut(s) | 159 |
| Mph1103I | ATGCAT | 2 cut(s) | 256, 398 |
| MscI | TGGCCA | 1 cut(s) | 159 |
| MseI | TTAA | 1 cut(s) | 436 |
| Msp20I | TGGCCA | 1 cut(s) | 159 |
| MspA1I | CMGCKG | 1 cut(s) | 310 |
| Mva1269I | GAATGC | 1 cut(s) | 256 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 203, 316, 393 |
| NlaIII | CATG | 5 cut(s) | 91, 127, 236, 258, 358 |
| NlaIV | GGNNCC | 1 cut(s) | 73 |
| NmeAIII | GCCGAG | 1 cut(s) | 30 |
| NsiI | ATGCAT | 2 cut(s) | 256, 398 |
| NspI | RCATGY | 1 cut(s) | 258 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 194 |
| PctI | GAATGC | 1 cut(s) | 256 |
| PfeI | GAWTC | 1 cut(s) | 291 |
| PleI | GAGTC | 1 cut(s) | 158 |
| PpsI | GAGTC | 1 cut(s) | 158 |
| PspN4I | GGNNCC | 1 cut(s) | 73 |
| PvuII | CAGCTG | 1 cut(s) | 310 |
| RsaI | GTAC | 1 cut(s) | 191 |
| RsaNI | GTAC | 1 cut(s) | 190 |
| SaqAI | TTAA | 1 cut(s) | 436 |
| SchI | GAGTC | 1 cut(s) | 158 |
| SetI | ASST | 6 cut(s) | 35, 67, 191, 212, 304, 312 |
| SfaNI | GCATC | 3 cut(s) | 306, 374, 405 |
| SspMI | CTAG | 2 cut(s) | 213, 303 |
| TaaI | ACNGT | 2 cut(s) | 41, 240 |
| TaiI | ACGT | 1 cut(s) | 191 |
| TaqI | TCGA | 1 cut(s) | 36 |
| TfiI | GAWTC | 1 cut(s) | 291 |
| Tru1I | TTAA | 1 cut(s) | 436 |
| Tru9I | TTAA | 1 cut(s) | 436 |
| TscAI | CASTG | 3 cut(s) | 46, 245, 414 |
| TspDTI | ATGAA | 3 cut(s) | 39, 249, 354 |
| TspRI | CASTG | 3 cut(s) | 46, 245, 414 |
| XceI | RCATGY | 1 cut(s) | 258 |
| XspI | CTAG | 2 cut(s) | 213, 303 |
| Zsp2I | ATGCAT | 2 cut(s) | 256, 398 |