Rroxscaffold_5G00349960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002409
Physical Location & Seq
Forward (+)
23442165 .. 23443993
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349960.1

Sequence Viewer

Length: 186 bp
ATGGATGGTCCGTCTGAAATCAAAGCTCGCAGGTCACACTTAATGGCTGCTGTCGGTATTGGTCTAGGCAATCTAGATCTAATTGGATGCACAAGTGTGTATGATGACGTTTGCAATATGATGGTCCGTAGTCTAGACCCCTTGAATGAGAGAGTCACCATACATGTGGCAAACAATTCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.6

Weight (kDa)

5.39

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 21
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 1 cut(s) 145
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 8, 124
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 2 cut(s) 8, 124
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 115
BcgI CGANNNNNNTGC 1 cut(s) 159
BfaI CTAG 3 cut(s) 65, 74, 134
BfuAI ACCTGC 1 cut(s) 21
BglII AGATCT 1 cut(s) 76
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 2 cut(s) 8, 124
BmgT120I GGNCC 2 cut(s) 8, 124
BmsI GCATC 1 cut(s) 77
BseGI GGATG 2 cut(s) 10, 92
BseXI GCAGC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 21
BssMI GATC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 28
BstF5I GGATG 2 cut(s) 10, 92
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 1 cut(s) 76
BtsCI GGATG 2 cut(s) 10, 92
BveI ACCTGC 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 8, 124
CviAII CATG 1 cut(s) 164
CviJI RGCY 2 cut(s) 26, 47
CviKI_1 RGCY 2 cut(s) 26, 47
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco47I GGWCC 2 cut(s) 8, 124
FaeI CATG 1 cut(s) 167
FaiI YATR 4 cut(s) 102, 119, 161, 165
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 17, 99
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 3 cut(s) 65, 74, 134
GluI GCNGC 1 cut(s) 48
Hin1II CATG 1 cut(s) 167
HinfI GANTC 1 cut(s) 153
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 74, 134
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 90, 114
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 77
MaeI CTAG 3 cut(s) 65, 74, 134
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 33, 154
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MflI RGATCY 1 cut(s) 76
MluCI AATT 2 cut(s) 81, 175
MlyI GAGTC 1 cut(s) 162
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 2 cut(s) 95, 164
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 167
NmuCI GTSAC 2 cut(s) 33, 154
NspI RCATGY 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 95
PciI ACATGT 1 cut(s) 163
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PscI ACATGT 1 cut(s) 163
PspPI GGNCC 2 cut(s) 8, 124
PsuI RGATCY 1 cut(s) 76
RseI CAYNNNNRTG 2 cut(s) 95, 164
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 2 cut(s) 8, 124
SchI GAGTC 1 cut(s) 162
SetI ASST 3 cut(s) 28, 35, 111
SfaNI GCATC 1 cut(s) 77
SgeI CNNG 8 cut(s) 39, 43, 77, 86, 105, 146, 154, 176
SinI GGWCC 2 cut(s) 8, 124
SmiMI CAYNNNNRTG 2 cut(s) 95, 164
Sse9I AATT 2 cut(s) 81, 175
SspMI CTAG 3 cut(s) 65, 74, 134
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 179
TasI AATT 2 cut(s) 81, 175
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseFI GTSAC 2 cut(s) 33, 154
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 2 cut(s) 33, 154
TspGWI ACGGA 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 8, 124
XbaI TCTAGA 2 cut(s) 73, 133
XceI RCATGY 1 cut(s) 167
XspI CTAG 3 cut(s) 65, 74, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.