Rh6CG200800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002409
Physical Location & Seq
Forward (+)
33513886 .. 33515552
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG200800.1

Sequence Viewer

Length: 699 bp
ATGGAAGCTGTTGCGGTTAACGTAAATGGCATGTATGCACAATTAGTTGGAATGGAGGAAAGGGTCGGAGGTTTGGAACCAGCTTTTGTGAAGATGGCGGATGCGATGGAGGACATGAAAACAATGTTGCAGTCATTTAAGAAGGACGCTGTCAAGAACATTGTGGAGTATGTTATTTTAAGATTAGGGCCAGGAAATACAATGAAGGGAGCTGCAAAGGAAGGAAATGATTTCAAGTCAGATGCTAATTACGCTGAAGCGTATAGGGAATTAGAGGGCCACTCTAATGAAGTATTAAACCATTTGGTACCATTGAAAAAAAGACGCCGAAACCATCCTCCTGATCAGGTCGGTACAGAGCTTGAAACGAGAAACAAAGAGGCATCGTGTTCAATCCAAGTGTTTGACGAGCCCAAACGGCCCACCGAAACAGGCAAAAAGGGGAATCAAAGAAAATATTCAAAGGGGTTTGACAATGAGCTGGTGGCTAGTTGTGATGGTTGGAGCGCGACACGATCAGACCTGGAGTGTCTATGGCGAGAAACATGCTTGGATGACATTGCCAGCGCAACATCTACACACCAATTGCTAACACACGAAGATTGGATTGAAAATGCAAGTAAACTAAGCAAATTGGATAGATTCAGATGGAGGATGAAAGACGCAAGACAGGTATTCTATATGGATGACGCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.4

Weight (kDa)

6.02

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 307
AccII CGCG 1 cut(s) 509
AciI CCGC 2 cut(s) 14, 98
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 2 cut(s) 309, 355
AgsI TTSAA 6 cut(s) 235, 316, 365, 393, 462, 611
AjnI CCWGG 2 cut(s) 190, 522
AluBI AGCT 5 cut(s) 8, 83, 212, 361, 481
AluI AGCT 5 cut(s) 8, 83, 212, 361, 481
AoxI GGCC 3 cut(s) 188, 277, 419
ApeKI GCWGC 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 457
Asp718I GGTACC 1 cut(s) 307
AspLEI GCGC 2 cut(s) 509, 569
AspS9I GGNCC 3 cut(s) 188, 277, 420
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 199
BccI CCATC 5 cut(s) 88, 100, 342, 491, 642
BceAI ACGGC 1 cut(s) 434
BcgI CGANNNNNNTGC 2 cut(s) 528, 562
BciT130I CCWGG 2 cut(s) 192, 524
BclI TGATCA 1 cut(s) 343
BfaI CTAG 1 cut(s) 489
BglI GCCNNNNNGGC 1 cut(s) 418
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 192, 524
BmgT120I GGNCC 3 cut(s) 188, 277, 420
BmiI GGNNCC 2 cut(s) 78, 309
BmrFI CCNGG 2 cut(s) 192, 524
BmsI GCATC 3 cut(s) 91, 232, 392
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BpmI CTGGAG 1 cut(s) 545
BsaHI GRCGYC 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 2 cut(s) 192, 524
BseGI GGATG 5 cut(s) 106, 334, 559, 660, 691
BseMI GCAATG 1 cut(s) 558
BseXI GCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 3 cut(s) 190, 279, 421
BshNI GGYRCC 1 cut(s) 307
BsnI GGCC 3 cut(s) 190, 279, 421
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 2 cut(s) 343, 515
BspACI CCGC 2 cut(s) 14, 98
BspANI GGCC 3 cut(s) 190, 279, 421
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 78, 309
BspT107I GGYRCC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 558
BssMI GATC 2 cut(s) 343, 515
BssNI GRCGYC 1 cut(s) 325
Bst2UI CCWGG 2 cut(s) 192, 524
BstACI GRCGYC 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 1 cut(s) 626
BstF5I GGATG 5 cut(s) 106, 334, 559, 660, 691
BstFNI CGCG 1 cut(s) 509
BstHHI GCGC 2 cut(s) 509, 569
BstKTI GATC 2 cut(s) 346, 518
BstMBI GATC 2 cut(s) 343, 515
BstMWI GCNNNNNNNGC 2 cut(s) 251, 418
BstNI CCWGG 2 cut(s) 192, 524
BstNSI RCATGY 2 cut(s) 34, 549
BstSCI CCNGG 2 cut(s) 190, 522
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 3 cut(s) 190, 279, 421
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 5 cut(s) 106, 334, 559, 660, 691
Cac8I GCNNGC 1 cut(s) 565
CfoI GCGC 2 cut(s) 509, 569
Cfr13I GGNCC 3 cut(s) 188, 277, 420
CseI GACGC 3 cut(s) 155, 333, 671
Csp6I GTAC 2 cut(s) 308, 354
CviAII CATG 3 cut(s) 31, 115, 546
CviQI GTAC 2 cut(s) 308, 354
DdeI CTNAG 1 cut(s) 626
DpnI GATC 2 cut(s) 345, 517
DpnII GATC 2 cut(s) 343, 515
EciI GGCGGA 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 190, 522
EcoT38I GRGCYC 1 cut(s) 414
FaeI CATG 3 cut(s) 34, 118, 549
FaiI YATR 9 cut(s) 32, 36, 116, 171, 264, 535, 547, 681, 683
FatI CATG 3 cut(s) 30, 114, 545
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 4 cut(s) 113, 321, 566, 667
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 489
GlaI GCGC 2 cut(s) 508, 568
GluI GCNGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 3 cut(s) 190, 279, 421
HgaI GACGC 3 cut(s) 155, 333, 671
HhaI GCGC 2 cut(s) 509, 569
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 3 cut(s) 34, 118, 549
Hin6I GCGC 2 cut(s) 507, 567
HinP1I GCGC 2 cut(s) 507, 567
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 2 cut(s) 445, 642
HpaI GTTAAC 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 19, 623
Hpy188I TCNGA 4 cut(s) 68, 241, 520, 647
Hpy188III TCNNGA 2 cut(s) 154, 341
Hpy8I GTNNAC 2 cut(s) 19, 623
HpyAV CCTTC 3 cut(s) 136, 199, 215
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 4 cut(s) 38, 130, 215, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 418
HpyF3I CTNAG 1 cut(s) 626
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 3 cut(s) 34, 118, 549
HspAI GCGC 2 cut(s) 507, 567
KpnI GGTACC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 343, 515
LmnI GCTCC 2 cut(s) 209, 504
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 3 cut(s) 91, 232, 392
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 21
MalI GATC 2 cut(s) 345, 517
MboI GATC 2 cut(s) 343, 515
MboII GAAGA 2 cut(s) 103, 611
MfeI CAATTG 1 cut(s) 584
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 5 cut(s) 41, 247, 269, 584, 632
MmeI TCCRAC 3 cut(s) 28, 46, 482
MnlI CCTC 7 cut(s) 49, 62, 103, 268, 348, 373, 645
MroXI GAANNNNTTC 1 cut(s) 457
MseI TTAA 4 cut(s) 18, 138, 179, 296
MslI CAYNNNNRTG 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 192, 524
MunI CAATTG 1 cut(s) 584
MvaI CCWGG 2 cut(s) 192, 524
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 2 cut(s) 251, 418
NdeII GATC 2 cut(s) 343, 515
NlaIII CATG 3 cut(s) 34, 118, 549
NlaIV GGNNCC 2 cut(s) 78, 309
NspI RCATGY 2 cut(s) 34, 549
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 445, 642
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 190, 522
PspGI CCWGG 2 cut(s) 190, 522
PspN4I GGNNCC 2 cut(s) 78, 309
PspPI GGNCC 3 cut(s) 188, 277, 420
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 2 cut(s) 309, 355
RsaNI GTAC 2 cut(s) 308, 354
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 4 cut(s) 18, 138, 179, 296
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 343, 515
Sau96I GGNCC 3 cut(s) 188, 277, 420
ScrFI CCNGG 2 cut(s) 192, 524
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 3 cut(s) 91, 232, 392
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 5 cut(s) 41, 247, 269, 584, 632
SsiI CCGC 2 cut(s) 14, 98
SspI AATATT 1 cut(s) 458
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 2 cut(s) 190, 522
TaiI ACGT 1 cut(s) 24
TasI AATT 5 cut(s) 41, 247, 269, 584, 632
TfiI GAWTC 2 cut(s) 445, 642
Tru1I TTAA 4 cut(s) 18, 138, 179, 296
Tru9I TTAA 4 cut(s) 18, 138, 179, 296
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 131, 218, 303, 671
Tth111I GACNNNGTC 1 cut(s) 149
XceI RCATGY 2 cut(s) 34, 549
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.