Rroxscaffold_7G00197790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002409
Physical Location & Seq
Forward (+)
42320975 .. 42332473
11499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197790.1

Sequence Viewer

Length: 645 bp
ATGGGGATACGTGATGGAGGTGAAGATGTGGAGTTAAGTAGTTCAATCAATGATGTAAGGGTGCTAAGTATACCGAAGTATTTGCCACTCGGTCATCGGGAAGTCCACATTCACCATGTGAAGAATTTGATGCTGGAAATAAACATCCCGGATGACACTTTCAAGCACTTAAATATTAGAACTGAAAAGCTGATTGTTTGTGGTTTTGTGTTTGCAGATAATGGGACCTTTGACATGAAGACCTTCTTCTCAAGCACTAGCAGTGGCCAAAAGAATGAGAGAAATCCAGCTACGGATAAGAGGCTTGGCAAGATGCGTGTGGCGTGGGAGCTAGAAAAGCATAAGTTTGAGAACAAGAGGTCCAAGCGTGTTCTCAAGCCCAGAAAAATATCTTTTGGAATCAACTCGATTAGAGGTCGTATGAAAGAGATATCGGCCGGTGAAGAAAGAGCAGCTCGGGCGAATTCCAGCTCGAGCTGTGTAGCTTCTCGGCCTCTTAGCGCCTTCCACGTTTCTATGCCCCTGTTGATATATAGCAACACTTTTTGGAGCTCTGGTCTGAACAGTGCTAATAATCTTGGGAATTACGAGTCTTTCAATGAGTGGGATAGATCTATAAGAAGGCTAAGCAGGATTCTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.35

Weight (kDa)

9.91

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 70
AcoI YGGCCR 2 cut(s) 265, 435
AcsI RAATTY 2 cut(s) 124, 463
AdeI CACNNNGTG 1 cut(s) 118
AgsI TTSAA 3 cut(s) 45, 163, 598
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 8 cut(s) 190, 290, 331, 455, 471, 477, 485, 552
AluI AGCT 8 cut(s) 190, 290, 331, 455, 471, 477, 485, 552
Alw21I GWGCWC 1 cut(s) 554
Ama87I CYCGRG 2 cut(s) 456, 472
AoxI GGCC 3 cut(s) 265, 435, 491
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 2 cut(s) 124, 463
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 2 cut(s) 225, 360
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 32, 104, 452
AvaI CYCGRG 2 cut(s) 456, 472
AvaII GGWCC 2 cut(s) 225, 360
BalI TGGCCA 1 cut(s) 267
BanII GRGCYC 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 554
BbvI GCAGC 1 cut(s) 464
BccI CCATC 1 cut(s) 8
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BcnI CCSGG 1 cut(s) 149
BfaI CTAG 3 cut(s) 258, 332, 643
BfoI RGCGCY 1 cut(s) 504
BglII AGATCT 1 cut(s) 611
BisI GCNGC 1 cut(s) 453
BlpI GCTNAGC 1 cut(s) 626
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 2 cut(s) 225, 360
BmeT110I CYCGRG 2 cut(s) 456, 472
BmgT120I GGNCC 2 cut(s) 225, 360
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 120, 303
BpiI GAAGAC 1 cut(s) 245
Bpu1102I GCTNAGC 1 cut(s) 626
BpuEI CTTGAG 2 cut(s) 235, 359
BpuMI CCSGG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 541, 571
Bse118I RCCGGY 1 cut(s) 437
BseGI GGATG 2 cut(s) 144, 157
BseX3I CGGCCG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 464
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 3 cut(s) 267, 437, 493
BsiEI CGRYCG 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 554
BsiHKCI CYCGRG 2 cut(s) 456, 472
BsiSI CCGG 2 cut(s) 149, 438
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 3 cut(s) 267, 437, 493
BsoBI CYCGRG 2 cut(s) 456, 472
Bsp1286I GDGCHC 1 cut(s) 554
Bsp143I GATC 1 cut(s) 611
Bsp1720I GCTNAGC 1 cut(s) 626
BspANI GGCC 3 cut(s) 267, 437, 493
BspLI GGNNCC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 437
BssMI GATC 1 cut(s) 611
BssNAI GTATAC 1 cut(s) 71
Bst1107I GTATAC 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 566
BstBAI YACGTR 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 65, 497, 626
BstF5I GGATG 2 cut(s) 144, 157
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 1 cut(s) 614
BstMBI GATC 1 cut(s) 611
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 2 cut(s) 337, 458
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 611
BstYI RGATCY 1 cut(s) 611
BstZ17I GTATAC 1 cut(s) 71
BstZI CGGCCG 1 cut(s) 435
BsuRI GGCC 3 cut(s) 267, 437, 493
BtsCI GGATG 2 cut(s) 144, 157
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 268, 571
CfoI GCGC 1 cut(s) 503
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 2 cut(s) 225, 360
CviAII CATG 2 cut(s) 116, 235
DdeI CTNAG 3 cut(s) 65, 497, 626
DpnI GATC 1 cut(s) 613
DpnII GATC 1 cut(s) 611
DraIII CACNNNGTG 1 cut(s) 118
EaeI YGGCCR 2 cut(s) 265, 435
EagI CGGCCG 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 552
EclXI CGGCCG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 554
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 225, 360
Eco52I CGGCCG 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 552
Eco88I CYCGRG 2 cut(s) 456, 472
EcoICRI GAGCTC 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 463
EcoRV GATATC 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 554
FaeI CATG 2 cut(s) 119, 238
FaiI YATR 9 cut(s) 71, 117, 236, 342, 422, 518, 532, 534, 617
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 1 cut(s) 238
FatI CATG 2 cut(s) 115, 234
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 2 cut(s) 131, 164
FriOI GRGCYC 1 cut(s) 554
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 3 cut(s) 258, 332, 643
GlaI GCGC 1 cut(s) 502
GluI GCNGC 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 504
HaeIII GGCC 3 cut(s) 267, 437, 493
HapII CCGG 2 cut(s) 149, 438
HhaI GCGC 1 cut(s) 503
Hin1II CATG 2 cut(s) 119, 238
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HinfI GANTC 3 cut(s) 399, 590, 634
HpaII CCGG 2 cut(s) 149, 438
HphI GGTGA 3 cut(s) 32, 104, 452
Hpy166II GTNNAC 2 cut(s) 71, 106
Hpy188I TCNGA 1 cut(s) 561
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 2 cut(s) 71, 106
HpyAV CCTTC 3 cut(s) 253, 514, 615
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4IV ACGT 2 cut(s) 10, 510
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 458
HpyF3I CTNAG 3 cut(s) 65, 497, 626
HpySE526I ACGT 2 cut(s) 10, 510
Hsp92II CATG 2 cut(s) 119, 238
HspAI GCGC 1 cut(s) 501
Kzo9I GATC 1 cut(s) 611
LmnI GCTCC 2 cut(s) 328, 549
LpnPI CCDG 9 cut(s) 119, 162, 300, 394, 451, 481, 536, 540, 616
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 2 cut(s) 120, 303
MaeI CTAG 3 cut(s) 258, 332, 643
MaeII ACGT 2 cut(s) 10, 510
MalI GATC 1 cut(s) 613
MboI GATC 1 cut(s) 611
MboII GAAGA 5 cut(s) 35, 133, 238, 250, 455
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 1 cut(s) 554
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 3 cut(s) 124, 463, 583
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 599
MnlI CCTC 5 cut(s) 11, 294, 351, 407, 504
Mox20I TGGCCA 1 cut(s) 267
MroXI GAANNNNTTC 1 cut(s) 242
MscI TGGCCA 1 cut(s) 267
MseI TTAA 2 cut(s) 35, 170
Msp20I TGGCCA 1 cut(s) 267
MspI CCGG 2 cut(s) 149, 438
MspR9I CCNGG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 337, 458
NciI CCSGG 1 cut(s) 149
NdeII GATC 1 cut(s) 611
NlaIII CATG 2 cut(s) 119, 238
NlaIV GGNNCC 1 cut(s) 226
NmeAIII GCCGAG 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 2 cut(s) 399, 634
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 11
PpuMI RGGWCCY 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 2 cut(s) 225, 360
PspPPI RGGWCCY 1 cut(s) 225
PspXI VCTCGAGB 1 cut(s) 472
PsuI RGATCY 1 cut(s) 611
SacI GAGCTC 1 cut(s) 554
SaqAI TTAA 2 cut(s) 35, 170
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 1 cut(s) 611
Sau96I GGNCC 2 cut(s) 225, 360
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 554
SfaNI GCATC 2 cut(s) 120, 303
Sfr274I CTCGAG 1 cut(s) 472
SinI GGWCC 2 cut(s) 225, 360
SlaI CTCGAG 1 cut(s) 472
SmlI CTYRAG 3 cut(s) 250, 374, 472
SmoI CTYRAG 3 cut(s) 250, 374, 472
Sse9I AATT 3 cut(s) 124, 463, 583
SspI AATATT 1 cut(s) 175
SspMI CTAG 3 cut(s) 258, 332, 643
SstI GAGCTC 1 cut(s) 554
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 566
TaiI ACGT 2 cut(s) 13, 513
TaqI TCGA 2 cut(s) 407, 473
TaqII GACCGA 1 cut(s) 80
TasI AATT 3 cut(s) 124, 463, 583
TfiI GAWTC 2 cut(s) 399, 634
Tru1I TTAA 2 cut(s) 35, 170
Tru9I TTAA 2 cut(s) 35, 170
TscAI CASTG 2 cut(s) 268, 571
TseI GCWGC 1 cut(s) 452
TspDTI ATGAA 2 cut(s) 251, 437
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 2 cut(s) 268, 571
VpaK11BI GGWCC 2 cut(s) 225, 360
XapI RAATTY 2 cut(s) 124, 463
XhoI CTCGAG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 3 cut(s) 258, 332, 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.