Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002409

Physical Location & Seq

Genomic Coordinates Reverse (-)

19048967 .. 19053614

Gene Structure 4648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG120500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2592 bp

ATGGTGAACAGTGATAAGGAAATCTTTCTCTTCTCTCTCATTTTCCAGAAGCAAAGCTTTAGGCTTTTAGACTCTTTCAACTTGACATACCAGAAAGATCTGATGGTTTCACAAGAAGAGCTTACATCAGGACGCATCATTCAAAAGGAAAAGAAAAAGGGTATGTTTAGTTCTGTTCTTAAAGATATTGTGGGAAGTAAAGGGAAGAATGTCCCTGAGATGGAAAATGAAGATACTAAAGAAAGTATTGAAGAACTTTCAAAAATCTTTTCAACTGCTAATTTCCAATTTGATGCTGAGAACACAGACAACCAGGCCATGGGTGAAGATGATGATCAGTTAGATATAGATTCTATGTCAACGGGCGACGCCATTAATCTAGTGAAGAAGAACGAAATACAAGATGAAGAAGTGTGTACGTTTATGTTAACGCCAACGCAATTCATTGAAACCACGCAGGGTCTGACAATGAACCAAGCAAATGTCGTCTCCAGTATCGGCTTCGGGGAGTTACATCACCTGGGATGCAGCACAATATTTGACACGGTATGTGAGATGATGCTTAATAGTATTGATCCTCTAAATGAGATTGTGTTGATACATGGCAAGGAAATACCCTTTGGACCCACAGATTTTGCACGTGTCATGGGCATAAAGGATGGTGGATTAGACATTCAGAACATGGGAGATACGAACGAAAGTCTTCTTAGGTTAATTAGGAAACAATTGGGGGGTGGAGAAGGTGGACTACACATTGCAAGTTTGAAGAAATGTATCATGGAAAGTACACGGGCTGATGAAATATTCAAGATAGCTTATGCACTTTATGCGGTCGCATGCATTTTATGTCCGAACGGAACCAATTTGGTCTACCAGTCATTGATTTCTACTCTAGTAGAGACGAACATGATAAAGGATCTGAATTGGGCAACGTTCTGCTACTATAAGATGCAGGAATCAGTCATATCGATGCAATCGAAAGGGTTCGGCAACCAAGCAATTTGTGTGCTATTCCTACAAAACTTTTACTTTGACGTCGTTGATAATGAATCCAGATGGGTTGACAAAGGAATCACTCCAATCGCTGCATGGAACACTAGTTTAGTGAAGAAATTGATTAGGTGGGTGGAACAAAATGGGGGAGTCACCAACACAAACCAGAATGTTTGGAGGAGACAACCTATAATCCATGAGAAGGAGTCTGATGAAAATGGGAAAATATATGATGCAAAACAAATATTGTTGAGTGTAGAAGGCCTGCATAAAAGGGTTTCTAATATGGAACAAAAAGAAAGTCGACTGACAGAATCAATGGAGAGAATGGAGAGGATGCTAGGCTCATTCCTAGGGGCAACAATTAAACATATCGTTGGAGAGGTGTTGGCTCATTTAGAACAGCGAGATGAAGGCAAGCATGGGGAGTGCCAAGATCAATTTAAGTTTAGAGCGGACCTTAATGTGCATGAATTCAGAGGCTCAGAGGCACAGTCTAATGATCCATCAAGACTATTGAAGGGCAAAAATATTTGCATGAACCCCCTGCCAGACGAGGTTTGCATGGCTAGAAAGATGAATCCCCCGCTCAAAGTCCAATCAAAATGTTCATTTAGCCCAGATGGTCCTCTGAAGCCGGCTAAGCGATCAATAAAGGAAAAGAAACTAAGGGCTGTCGGGGTGCAGTCAATGCATATACGGAAGGCTCTTTTCAAAACACGAGGAAGAACATATGGCAAGCAAACAAGAGCGGAATTGAAGGATGATGAAAAACAAGAGGAAGAAGGTTTTCGTTGCCTATTCAACGTCAAAGCAAATACTCCAAATGAGGACATCGAGTTGTTGACTTTCATTGGGTTTAGTAAGAAGCCAATTACAAATCTTCAAATGAGATATTACAATGTCACAGTAGCTAAACATGGGGGAGTGATTGTATCAAGAGCCGACATGCAATGCCTACTGCCTGGTCAACTTTTGAGCAACTATATATACATTCCTCTGCGCGATCCTGCATCTGAGGGGCATTGGTATTTGTTGGTGGTGCACAAAGACTCCAGATTTGGGGAAATCGTTGACAGTGCACCTGATGATGATAGGACTTCATTCCGTGAGGAAGTTGCAAGAATGGCGATGAACATGCTAGACAATGTTTTTGGTGATGATATTAGGGAGGAAATGGGAGTGCTACCTCACTTTACTGATCTTCCATTCATGGATAAGCACAACCACCCGGTTCAAAGAAACTCATTCGACTGTGGTGTGTTTGTAATAAGAAACATGCAGCATTATGGCACACAATGGAATGAGGATTATGTTTCAGATGAGCACCGCGCAAATTTGGTCCTTGAGTGTGTCAATCACCCTCGCAATGAGATGGTAAATGTAAGAGAAATGGTGGCAGATTGTTTGTCGCAACGAGGGGGAGATGCGGTAGATGGAACGTGTAGCACTAGGGTTGGTGAGGCTCGTCACATGATGACCAGTGGTGGCATGACAATGGATGTTGATCCCATGGACGAGAGAAGAGGTTACTTGGGTAATGGAAACAAGCATGAATTTTACAATCTGTGTTCAAGTTGCACATCTGACCTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0012505 GO:0016020 GO:0017016 GO:0017075 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0030141 GO:0030234 GO:0030695 GO:0031267 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045921 GO:0048518 GO:0048522 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051223 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0097708 GO:0098772 GO:0099503 GO:1903530 GO:1903532

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lgl_C

Protein Analysis

863

Amino Acids

97.86

Weight (kDa)

5.5

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	660 - 768	1.5e-09	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002409)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002091 RLG00000004454 RLG00000033140 RLG00000033141 RLG00000033142
rosa_multiflora	Rmu_sc0000077.1_g000043 Rmu_sc0000361.1_g000004 Rmu_sc0002048.1_g000017 Rmu_sc0007180.1_g000005 Rmu_sc0007223.1_g000007 Rmu_sc0008769.1_g000009
rosa_roxburghii	Rroxscaffold_2G00118160 Rroxscaffold_2G00118170 Rroxscaffold_2G00125280 Rroxscaffold_3G00237010 Rroxscaffold_5G00349960 Rroxscaffold_5G00349970 Rroxscaffold_5G00362900 Rroxscaffold_7G00197790 Rroxscaffold_7G00197870
rosa_rugosa	Rorug07G0208000
rosa_samantha	Rh1BG098800 Rh1CG156600 Rh2DG571500 Rh4AG336300 Rh4BG133300 Rh4BG219500 Rh4DG120500 Rh4DG338800 Rh5DG299800 Rh6AG195900 Rh6BG101300 Rh6BG101400 Rh6BG101500 Rh6CG173400 Rh6CG200800 Rh7AG275000 Rh7DG346800
rosa_wichuraiana	Rw4G010230 Rw5G035120 Rw6G007570 Rw6G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1038
AccB7I	CCANNNNNTGG	1 cut(s)	319
AccBSI	CCGCTC	3 cut(s)	1448, 1582, 1745
AccI	GTMKAC	2 cut(s)	870, 1297
AccII	CGCG	2 cut(s)	1998, 2325
AciI	CCGC	6 cut(s)	830, 1448, 1580, 1745, 2323, 2423
AclI	AACGTT	1 cut(s)	932
AclWI	GGATC	5 cut(s)	569, 924, 1490, 1994, 2495
AcsI	RAATTY	3 cut(s)	1466, 2329, 2549
AcuI	CTGAAG	1 cut(s)	1646
AcvI	CACGTG	1 cut(s)	641
AcyI	GRCGYC	2 cut(s)	369, 1035
AfaI	GTAC	2 cut(s)	418, 787
AfiI	CCNNNNNNNGG	4 cut(s)	220, 319, 1195, 2055
AflIII	ACRYGT	2 cut(s)	640, 2435
AhlI	ACTAGT	1 cut(s)	1097
AjnI	CCWGG	3 cut(s)	312, 519, 1957
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AluBI	AGCT	4 cut(s)	57, 121, 815, 1907
AluI	AGCT	4 cut(s)	57, 121, 815, 1907
Alw21I	GWGCWC	3 cut(s)	2040, 2077, 2322
Alw26I	GTCTC	3 cut(s)	493, 893, 1168
Alw44I	GTGCAC	2 cut(s)	2036, 2073
AlwI	GGATC	5 cut(s)	569, 924, 1490, 1994, 2495
AlwNI	CAGNNNCTG	1 cut(s)	463
AoxI	GGCC	2 cut(s)	315, 1255
ApaLI	GTGCAC	2 cut(s)	2036, 2073
ApeKI	GCWGC	3 cut(s)	528, 1085, 2275
ApoI	RAATTY	3 cut(s)	1466, 2329, 2549
ArsI	GACNNNNNNTTYG	6 cut(s)	1279, 1311, 2036, 2068, 2129, 2161
AseI	ATTAAT	1 cut(s)	375
Asp700I	GAANNNNTTC	4 cut(s)	24, 702, 983, 1782
AspA2I	CCTAGG	1 cut(s)	1345
AspLEI	GCGC	2 cut(s)	1998, 2327
AspS9I	GGNCC	4 cut(s)	623, 1450, 1619, 2335
AsuC2I	CCSGG	1 cut(s)	2225
AsuHPI	GGTGA	7 cut(s)	16, 335, 509, 1138, 2162, 2345, 2465
AvaII	GGWCC	4 cut(s)	623, 1450, 1619, 2335
AvrII	CCTAGG	1 cut(s)	1345
BaeGI	GKGCMC	2 cut(s)	2040, 2077
BarI	GAAGNNNNNNTAC	2 cut(s)	732, 764
BauI	CACGAG	1 cut(s)	1713
BbrPI	CACGTG	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	3 cut(s)	2040, 2077, 2322
BbvI	GCAGC	3 cut(s)	540, 1072, 2287
BccI	CCATC	8 cut(s)	97, 214, 653, 1050, 1507, 1610, 2362, 2423
BcgI	CGANNNNNNTGC	2 cut(s)	2113, 2147
BciT130I	CCWGG	3 cut(s)	314, 521, 1959
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	2225
BcoDI	GTCTC	3 cut(s)	493, 893, 1168
BcuI	ACTAGT	1 cut(s)	1097
BfaI	CTAG	8 cut(s)	380, 893, 1098, 1334, 1346, 1563, 2135, 2445
BfmI	CTRYAG	1 cut(s)	2585
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	3 cut(s)	529, 1086, 2276
BlnI	CCTAGG	1 cut(s)	1345
BlpI	GCTNAGC	1 cut(s)	1635
BlsI	GCNGC	3 cut(s)	530, 1087, 2277
Bme1390I	CCNGG	4 cut(s)	314, 521, 1959, 2225
Bme18I	GGWCC	4 cut(s)	623, 1450, 1619, 2335
BmgT120I	GGNCC	4 cut(s)	623, 1450, 1619, 2335
BmiI	GGNNCC	2 cut(s)	625, 859
BmrFI	CCNGG	4 cut(s)	314, 521, 1959, 2225
BpiI	GAAGAC	1 cut(s)	695
BpmI	CTGGAG	2 cut(s)	475, 2032
Bpu1102I	GCTNAGC	1 cut(s)	1635
BpuEI	CTTGAG	1 cut(s)	2360
BpuMI	CCSGG	1 cut(s)	2225
Bsa29I	ATCGAT	1 cut(s)	968
BsaAI	YACGTR	1 cut(s)	641
BsaBI	GATNNNNATC	2 cut(s)	333, 2499
BsaHI	GRCGYC	2 cut(s)	369, 1035
BsaJI	CCNNGG	4 cut(s)	318, 520, 1345, 2505
BsaXI	ACNNNNNCTCC	6 cut(s)	1911, 1941, 2030, 2060, 2409, 2439
Bsc4I	CCNNNNNNNGG	4 cut(s)	220, 319, 1195, 2055
Bse118I	RCCGGY	1 cut(s)	1630
Bse1I	ACTGG	3 cut(s)	492, 874, 2475
Bse3DI	GCAATG	3 cut(s)	753, 1952, 2368
Bse8I	GATNNNNATC	2 cut(s)	333, 2499
BseBI	CCWGG	3 cut(s)	314, 521, 1959
BseCI	ATCGAT	1 cut(s)	968
BseDI	CCNNGG	4 cut(s)	318, 520, 1345, 2505
BseGI	GGATG	5 cut(s)	530, 664, 1335, 1762, 2500
BseJI	GATNNNNATC	2 cut(s)	333, 2499
BseLI	CCNNNNNNNGG	4 cut(s)	220, 319, 1195, 2055
BseMI	GCAATG	3 cut(s)	753, 1952, 2368
BseMII	CTCAG	4 cut(s)	207, 288, 1491, 2001
BseNI	ACTGG	3 cut(s)	492, 874, 2475
BseRI	GAGGAG	1 cut(s)	1186
BseSI	GKGCMC	2 cut(s)	2040, 2077
BseXI	GCAGC	3 cut(s)	540, 1072, 2287
BsgI	GTGCAG	1 cut(s)	1697
Bsh1236I	CGCG	2 cut(s)	1998, 2325
Bsh1285I	CGRYCG	1 cut(s)	834
BshFI	GGCC	2 cut(s)	317, 1257
BshVI	ATCGAT	1 cut(s)	968
BsiEI	CGRYCG	1 cut(s)	834
BsiHKAI	GWGCWC	3 cut(s)	2040, 2077, 2322
BsiSI	CCGG	2 cut(s)	1631, 2225
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	4 cut(s)	220, 319, 1195, 2055
BsmAI	GTCTC	3 cut(s)	493, 893, 1168
BsmBI	CGTCTC	2 cut(s)	493, 893
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	317, 1257
Bsp1286I	GDGCHC	3 cut(s)	2040, 2077, 2322
Bsp1720I	GCTNAGC	1 cut(s)	1635
Bsp19I	CCATGG	2 cut(s)	318, 2505
BspACI	CCGC	6 cut(s)	830, 1448, 1580, 1745, 2323, 2423
BspANI	GGCC	2 cut(s)	317, 1257
BspCNI	CTCAG	4 cut(s)	208, 289, 1490, 2002
BspDI	ATCGAT	1 cut(s)	968
BspFNI	CGCG	2 cut(s)	1998, 2325
BspLI	GGNNCC	2 cut(s)	625, 859
BspMAI	CTGCAG	1 cut(s)	2589
BspPI	GGATC	5 cut(s)	569, 924, 1490, 1994, 2495
BspQI	GCTCTTC	1 cut(s)	111
BsrBI	CCGCTC	3 cut(s)	1448, 1582, 1745
BsrDI	GCAATG	3 cut(s)	753, 1952, 2368
BsrFI	RCCGGY	1 cut(s)	1630
BsrI	ACTGG	3 cut(s)	492, 874, 2475
BssAI	RCCGGY	1 cut(s)	1630
BssECI	CCNNGG	4 cut(s)	318, 520, 1345, 2505
BssNI	GRCGYC	2 cut(s)	369, 1035
BssSI	CACGAG	1 cut(s)	1713
BssT1I	CCWWGG	3 cut(s)	318, 1345, 2505
Bst2BI	CACGAG	1 cut(s)	1713
Bst2UI	CCWGG	3 cut(s)	314, 521, 1959
Bst4CI	ACNGT	6 cut(s)	11, 547, 1488, 1903, 2072, 2249
Bst6I	CTCTTC	3 cut(s)	35, 111, 2512
BstACI	GRCGYC	2 cut(s)	369, 1035
BstAPI	GCANNNNNTGC	2 cut(s)	827, 1684
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	5 cut(s)	838, 1259, 1412, 1632, 1733
BstDEI	CTNAG	7 cut(s)	216, 297, 707, 1477, 1635, 1661, 2010
BstDSI	CCRYGG	2 cut(s)	318, 2505
BstF5I	GGATG	5 cut(s)	530, 664, 1335, 1762, 2500
BstFNI	CGCG	2 cut(s)	1998, 2325
BstHHI	GCGC	2 cut(s)	1998, 2327
BstMAI	GTCTC	3 cut(s)	493, 893, 1168
BstMCI	CGRYCG	1 cut(s)	834
BstMWI	GCNNNNNNNGC	4 cut(s)	827, 1636, 1684, 2120
BstNI	CCWGG	3 cut(s)	314, 521, 1959
BstNSI	RCATGY	4 cut(s)	840, 1945, 2134, 2275
BstSCI	CCNGG	4 cut(s)	312, 519, 1957, 2223
BstSFI	CTRYAG	1 cut(s)	2585
BstSLI	GKGCMC	2 cut(s)	2040, 2077
BstUI	CGCG	2 cut(s)	1998, 2325
BstV1I	GCAGC	3 cut(s)	540, 1072, 2287
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	2 cut(s)	97, 916
BstYI	RGATCY	2 cut(s)	97, 916
Bsu15I	ATCGAT	1 cut(s)	968
BsuRI	GGCC	2 cut(s)	317, 1257
BsuTUI	ATCGAT	1 cut(s)	968
BtgI	CCRYGG	2 cut(s)	318, 2505
BtgZI	GCGATG	1 cut(s)	2138
BtsCI	GGATG	5 cut(s)	530, 664, 1335, 1762, 2500
BtsIMutI	CAGTG	3 cut(s)	16, 2077, 2482
Cac8I	GCNNGC	5 cut(s)	838, 1259, 1412, 1632, 1733
CaiI	CAGNNNCTG	1 cut(s)	463
CfoI	GCGC	2 cut(s)	1998, 2327
Cfr10I	RCCGGY	1 cut(s)	1630
Cfr13I	GGNCC	4 cut(s)	623, 1450, 1619, 2335
ClaI	ATCGAT	1 cut(s)	968
CseI	GACGC	2 cut(s)	141, 377
Csp6I	GTAC	2 cut(s)	417, 786
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviQI	GTAC	2 cut(s)	417, 786
DdeI	CTNAG	7 cut(s)	216, 297, 707, 1477, 1635, 1661, 2010
Eam1104I	CTCTTC	3 cut(s)	35, 111, 2512
EarI	CTCTTC	3 cut(s)	35, 111, 2512
Eco130I	CCWWGG	3 cut(s)	318, 1345, 2505
Eco147I	AGGCCT	1 cut(s)	1257
Eco47I	GGWCC	4 cut(s)	623, 1450, 1619, 2335
Eco57I	CTGAAG	1 cut(s)	1646
Eco72I	CACGTG	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	1466
EcoRII	CCWGG	3 cut(s)	312, 519, 1957
EcoT14I	CCWWGG	3 cut(s)	318, 1345, 2505
EcoT22I	ATGCAT	2 cut(s)	842, 1689
ErhI	CCWWGG	3 cut(s)	318, 1345, 2505
Esp3I	CGTCTC	2 cut(s)	493, 893
FalI	AAGNNNNNCTT	6 cut(s)	8, 40, 41, 73, 105, 137
FaqI	GGGAC	1 cut(s)	197
FauI	CCCGC	1 cut(s)	1587
FauNDI	CATATG	1 cut(s)	1726
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	2 cut(s)	870, 1297
Fnu4HI	GCNGC	3 cut(s)	529, 1086, 2276
FokI	GGATG	5 cut(s)	537, 671, 1342, 1769, 2507
Fsp4HI	GCNGC	3 cut(s)	529, 1086, 2276
FspBI	CTAG	8 cut(s)	380, 893, 1098, 1334, 1346, 1563, 2135, 2445
GlaI	GCGC	2 cut(s)	1997, 2326
GluI	GCNGC	3 cut(s)	529, 1086, 2276
GsuI	CTGGAG	2 cut(s)	475, 2032
HaeIII	GGCC	2 cut(s)	317, 1257
HapII	CCGG	2 cut(s)	1631, 2225
HgaI	GACGC	2 cut(s)	141, 377
HhaI	GCGC	2 cut(s)	1998, 2327
Hin1I	GRCGYC	2 cut(s)	369, 1035
Hin6I	GCGC	2 cut(s)	1996, 2325
HinP1I	GCGC	2 cut(s)	1996, 2325
HincII	GTYRAC	7 cut(s)	360, 429, 1063, 1298, 1839, 1964, 2068
HindII	GTYRAC	7 cut(s)	360, 429, 1063, 1298, 1839, 1964, 2068
HindIII	AAGCTT	1 cut(s)	55
HpaI	GTTAAC	1 cut(s)	429
HpaII	CCGG	2 cut(s)	1631, 2225
HphI	GGTGA	7 cut(s)	16, 335, 509, 1138, 2162, 2345, 2465
Hpy188III	TCNNGA	7 cut(s)	46, 129, 808, 1053, 1503, 1932, 2049
Hpy99I	CGWCG	2 cut(s)	371, 1040
HpyAV	CCTTC	8 cut(s)	734, 1189, 1247, 1400, 1507, 1690, 1747, 1772
HpyCH4III	ACNGT	6 cut(s)	11, 547, 1488, 1903, 2072, 2249
HpyCH4IV	ACGT	6 cut(s)	419, 640, 932, 1035, 1800, 2435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	827, 1636, 1684, 2120
HpyF3I	CTNAG	7 cut(s)	216, 297, 707, 1477, 1635, 1661, 2010
HpySE526I	ACGT	6 cut(s)	419, 640, 932, 1035, 1800, 2435
Hsp92I	GRCGYC	2 cut(s)	369, 1035
HspAI	GCGC	2 cut(s)	1996, 2325
KroI	GCCGGC	1 cut(s)	1630
KroNI	GCCGGC	1 cut(s)	1632
Ksp22I	TGATCA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	429
LguI	GCTCTTC	1 cut(s)	111
Lsp1109I	GCAGC	3 cut(s)	540, 1072, 2287
MaeI	CTAG	8 cut(s)	380, 893, 1098, 1334, 1346, 1563, 2135, 2445
MaeII	ACGT	6 cut(s)	419, 640, 932, 1035, 1800, 2435
MaeIII	GTNAC	5 cut(s)	510, 1144, 1897, 2462, 2522
MbiI	CCGCTC	3 cut(s)	1448, 1582, 1745
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	2 cut(s)	97, 916
MhlI	GDGCHC	3 cut(s)	2040, 2077, 2322
MlyI	GAGTC	4 cut(s)	65, 1152, 1208, 2039
MmeI	TCCRAC	1 cut(s)	1351
Mph1103I	ATGCAT	2 cut(s)	842, 1689
MroNI	GCCGGC	1 cut(s)	1630
MroXI	GAANNNNTTC	4 cut(s)	24, 702, 983, 1782
MseI	TTAA	8 cut(s)	180, 375, 428, 564, 713, 1359, 1437, 1455
MslI	CAYNNNNRTG	2 cut(s)	968, 2489
MspI	CCGG	2 cut(s)	1631, 2225
MspR9I	CCNGG	4 cut(s)	314, 521, 1959, 2225
MunI	CAATTG	1 cut(s)	725
MvaI	CCWGG	3 cut(s)	314, 521, 1959
MvnI	CGCG	2 cut(s)	1998, 2325
MwoI	GCNNNNNNNGC	4 cut(s)	827, 1636, 1684, 2120
NaeI	GCCGGC	1 cut(s)	1632
NciI	CCSGG	1 cut(s)	2225
NcoI	CCATGG	2 cut(s)	318, 2505
NdeI	CATATG	1 cut(s)	1726
NgoMIV	GCCGGC	1 cut(s)	1630
NlaIV	GGNNCC	2 cut(s)	625, 859
NmuCI	GTSAC	3 cut(s)	1144, 1897, 2462
NsiI	ATGCAT	2 cut(s)	842, 1689
NspI	RCATGY	4 cut(s)	840, 1945, 2134, 2275
PaeI	GCATGC	1 cut(s)	840
PceI	AGGCCT	1 cut(s)	1257
PciSI	GCTCTTC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	974
PdiI	GCCGGC	1 cut(s)	1632
PdmI	GAANNNNTTC	4 cut(s)	24, 702, 983, 1782
PfeI	GAWTC	6 cut(s)	350, 956, 1049, 1071, 1307, 1573
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	530, 1087, 2277
PleI	GAGTC	4 cut(s)	65, 1151, 1207, 2039
PmaCI	CACGTG	1 cut(s)	641
PmlI	CACGTG	1 cut(s)	641
PpsI	GAGTC	4 cut(s)	65, 1151, 1207, 2039
Ppu21I	YACGTR	1 cut(s)	641
PshBI	ATTAAT	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	932
Psp6I	CCWGG	3 cut(s)	312, 519, 1957
PspCI	CACGTG	1 cut(s)	641
PspGI	CCWGG	3 cut(s)	312, 519, 1957
PspN4I	GGNNCC	2 cut(s)	625, 859
PspPI	GGNCC	4 cut(s)	623, 1450, 1619, 2335
PsrI	GAACNNNNNNTAC	2 cut(s)	154, 186
PstI	CTGCAG	1 cut(s)	2589
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	97, 916
RsaI	GTAC	2 cut(s)	418, 787
RsaNI	GTAC	2 cut(s)	417, 786
RseI	CAYNNNNRTG	2 cut(s)	968, 2489
SalI	GTCGAC	1 cut(s)	1296
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	8 cut(s)	180, 375, 428, 564, 713, 1359, 1437, 1455
SatI	GCNGC	3 cut(s)	529, 1086, 2276
Sau96I	GGNCC	4 cut(s)	623, 1450, 1619, 2335
SchI	GAGTC	4 cut(s)	65, 1152, 1208, 2039
ScrFI	CCNGG	4 cut(s)	314, 521, 1959, 2225
SduI	GDGCHC	3 cut(s)	2040, 2077, 2322
SfcI	CTRYAG	1 cut(s)	2585
SinI	GGWCC	4 cut(s)	623, 1450, 1619, 2335
SmiMI	CAYNNNNRTG	2 cut(s)	968, 2489
SmlI	CTYRAG	1 cut(s)	2339
SmoI	CTYRAG	1 cut(s)	2339
SpeI	ACTAGT	1 cut(s)	1097
SphI	GCATGC	1 cut(s)	840
SseBI	AGGCCT	1 cut(s)	1257
SsiI	CCGC	6 cut(s)	830, 1448, 1580, 1745, 2323, 2423
SspI	AATATT	4 cut(s)	537, 804, 1239, 1525
SspMI	CTAG	8 cut(s)	380, 893, 1098, 1334, 1346, 1563, 2135, 2445
StuI	AGGCCT	1 cut(s)	1257
StyD4I	CCNGG	4 cut(s)	312, 519, 1957, 2223
StyI	CCWWGG	3 cut(s)	318, 1345, 2505
TaaI	ACNGT	6 cut(s)	11, 547, 1488, 1903, 2072, 2249
TaiI	ACGT	6 cut(s)	422, 643, 935, 1038, 1803, 2438
TaqI	TCGA	5 cut(s)	968, 977, 1297, 1830, 2244
TatI	WGTACW	1 cut(s)	785
TfiI	GAWTC	6 cut(s)	350, 956, 1049, 1071, 1307, 1573
Tru1I	TTAA	8 cut(s)	180, 375, 428, 564, 713, 1359, 1437, 1455
Tru9I	TTAA	8 cut(s)	180, 375, 428, 564, 713, 1359, 1437, 1455
TscAI	CASTG	3 cut(s)	16, 2077, 2482
TseFI	GTSAC	3 cut(s)	1144, 1897, 2462
TseI	GCWGC	3 cut(s)	528, 1085, 2275
Tsp45I	GTSAC	3 cut(s)	1144, 1897, 2462
TspGWI	ACGGA	3 cut(s)	870, 1708, 2090
TspRI	CASTG	3 cut(s)	16, 2077, 2482
Van91I	CCANNNNNTGG	1 cut(s)	319
VneI	GTGCAC	2 cut(s)	2036, 2073
VpaK11BI	GGWCC	4 cut(s)	623, 1450, 1619, 2335
VspI	ATTAAT	1 cut(s)	375
XapI	RAATTY	3 cut(s)	1466, 2329, 2549
XceI	RCATGY	4 cut(s)	840, 1945, 2134, 2275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1086
XmaJI	CCTAGG	1 cut(s)	1345
XmiI	GTMKAC	2 cut(s)	870, 1297
XmnI	GAANNNNTTC	4 cut(s)	24, 702, 983, 1782
XspI	CTAG	8 cut(s)	380, 893, 1098, 1334, 1346, 1563, 2135, 2445
ZraI	GACGTC	1 cut(s)	1036
Zsp2I	ATGCAT	2 cut(s)	842, 1689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.