Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002409

Physical Location & Seq

Genomic Coordinates Reverse (-)

23475352 .. 23480733

Gene Structure 5382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2952 bp

ATGAAACAAAGAAAGTCAGTTCTACATGCTGGGCATGTCCTTTTTGGGAGTAAAGTTGTTGTTGGGTACAACAACAGAGATATTTTCATCTGGAGCATTCCTTCGAACCCAAATCCATCGGAATGTAGCACGCAAAGTAGTCCAATATGTAAACTCAATCTTGGATACAAGTTTGACAAAATTCCTATAGCATCATTGAGATGGATTTATGCAGAAGGGAAGGCAAGTCGAATATATGTTATGGGCGCATCTGACATTGTTTCATCAAACTTGTTGCAGGTAATCCTGTTGAATGAGCATACTAAAGTCTGCACTATTAGATTAGGACTTCAGTTGCCTGAGCCTTGCATCGACATGGAGATTATTTCTTCAACCTTTAGCAAGCAAAGCAAACATAAACAAGAGTGCTTTCTCGTGCTTGGTAATTCAGGACATCTTTATGCCTATGATGATTGCTCAATTGAAAAGTATCTTCTACATATATATTCCCAAGTGAACAGTGATAAGGAAATCTTTCTCTTCTCTCTCATTTTCCAGAAGCAAAGCTTTAGTGTCTTTCCTCATTCAAGGCTTTTAGACTCTTTCAACTTGACATACCAGAAAGATCTGATGGTTTCACAAGAAGAGCTTACATCAGGACGCATCATTCAAAAGGAAAAGAAAAAGGGTATGTTTAGTTCTGTTCTTAAAGATATTGTGGGAAGTAAAGGGAAGAATGTCCCTGAGATGGAAAATGAAGATACTAAAGAAAGTATTGAAGAACTTTCAAAAATCTTTTCAACTGCTAATTTCCAATTTGATGCTGAGAACACAGACAACCAGGCCATGGGTGAAGATGATGATCAGTTAGATATAGATTCTATGTCAACGGGCGACGCCATTAATCTAGTGAAGAAGAACGAAATACAAGATGAAGAAGTGTGTACGTTTATGTTAACGCCAACGCAATTCATTGAAACCACGCAGGGTCTGACAATGAACCAAGCAAATGTCGTCTCCAGTATCGGCTTCGGGGAGTTACATCACCTGGGATGCAGCACAATATTTGACACGGTATGTGAGATGATGCTTAATAGTATTGATCCTCTAAATGAGATTGTGTTGATACATGGCAAGGAAATACCCTTTGGACCCACAGATTTTGCACGTGTCATGGGCATAAAGGATGGTGGATTAGACATTCAGAACATGGGAGATACGAACGAAAGTCTTCTTAGGTTAATTAGGAAACAATTGGGGGGTGGAGAAGGTGGACTACACATTGCAAGTTTGAAGAAATGTATCATGGAAAGTACACGGGCTGATGAAATATTCAAGATAGCTTATGCACTTTATGCGGTCGCATGCATTTTATGTCCGAACGGAACCAATTTGGTCTACCAGTCATTGATTTCTACTCTAGTAGAGACGAACATGATAAAGGATCTGAATTGGGCAACGTTCTGCTACTATAAGATGCAGGAATCAGTCATATCGATGCAATCGAAAGGGTTCGGCAACCAAGCAATTTGTGTGCTATTCCTACAAAACTTTTACTTTGACGTCGTTGATAATGAATCCAGATGGGTTGACAAAGGAATCACTCCAATCGCTGCATGGAACACTAGTTTAGTGAAGAAATTGATTAGGTGGGTGGAACAAAATGGGGGAGTCACCAACACAAACCAGAATGTTTGGAGGAGACAACCTATAATCCATGAGAAGGAGTCTGATGAAAATGGGAAAATATATGATGCAAAACAAATATTGTTGAGTGTAGAAGGCCTGCATAAAAGGGTTTCTAATATGGAACAAAAAGAAAGTCGACTGACAGAATCAATGGAGAGAATGGAGAGGATGCTAGGCTCATTCCTAGGGGCAACAATTAAACATATCGTTGGAGAGGTGTTGGCTCATTTAGAACAGCGAGATGAAGGCAAGCATGGGGAGTGCCAAGATCAATTTAAGTTTAGAGCGGACCTTAATGTGCATGAATTCAGAGGCTCAGAGGCACAGTCTAATGATCCATCAAGACTATTGAAGGGCAAAAATATTTGCATGAACCCCCTGCCAGACGAGGTTTGCATGGCTAGAAAGATGAATCCCCCGCTCAAAGTCCAATCAAAATGTTCATTTAGCCCAGATGGTCCTCTGAAGCCGGCTAAGCGATCAATAAAGGAAAAGAAACTAAGGGCTGTCGGGGTGCAGTCAATGCATATACGGAAGGCTCTTTTCAAAACACGAGGAAGAACATATGGCAAGCAAACAAGAGCGGAATTGAAGGATGATGAAAAACAAGAGGAAGAAGGTTTTCGTTGCCTATTCAACGTCAAAGCAAATACTCCAAATGAGGACATCGAGTTGTTGACTTTCATTGGGTTTAGTAAGAAGCCAATTACAAATCTTCAAATGAGATATTACAATGTCACAGTAGCTAAACATGGGGGAGTGATTGTATCAAGAGCCGACATGCAATGCCTACTGCCTGACTCCAGATTTGGGGAAATCGTTGACAGTGCACCTGATGATGATAGGACTTCATTCCGTGAGGAAGTTGCAAGAATGGCGATGAACATGCTAGACAATGTTTTTGGTGATGATATTAGGGAGGAAATGGGAGTGCTACCTCACTTTACTGATCTTCCATTCATGGATAAGCACAACCACCCGGTTCAAAGAAACTCATTCGACTGTGATGAGCACCGCGCAAATTTGGTCCTTGAGTGTGTCAATCACCCTCGCAATGAGATGGTAAATGTAAGAGAAATGGTGGCAGATTGTTTGTTGCAACGAGGGGGAGATGCGGTAGATGGAACGTGTAGCACTAGGGTTGGTGAGGCTCGTCACATGATGACCAGTGGTGGCATGACAATGGATGTTGATCCCATGGACGAGAGAAGAGGTTACTTGGGTAATGGAAACAAGCATGAATTTTACAATCTGTGTTCAAGTTGCACATCTGACCTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0012505 GO:0016020 GO:0017016 GO:0017075 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0030141 GO:0030234 GO:0030695 GO:0031267 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045921 GO:0048518 GO:0048522 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051223 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0097708 GO:0098772 GO:0099503 GO:1903530 GO:1903532

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lgl_C

Protein Analysis

983

Amino Acids

111.08

Weight (kDa)

5.83

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002409)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002091 RLG00000004454 RLG00000033140 RLG00000033141 RLG00000033142
rosa_multiflora	Rmu_sc0000077.1_g000043 Rmu_sc0000361.1_g000004 Rmu_sc0002048.1_g000017 Rmu_sc0007180.1_g000005 Rmu_sc0007223.1_g000007 Rmu_sc0008769.1_g000009
rosa_roxburghii	Rroxscaffold_2G00118160 Rroxscaffold_2G00118170 Rroxscaffold_2G00125280 Rroxscaffold_3G00237010 Rroxscaffold_5G00349960 Rroxscaffold_5G00349970 Rroxscaffold_5G00362900 Rroxscaffold_7G00197790 Rroxscaffold_7G00197870
rosa_rugosa	Rorug07G0208000
rosa_samantha	Rh1BG098800 Rh1CG156600 Rh2DG571500 Rh4AG336300 Rh4BG133300 Rh4BG219500 Rh4DG120500 Rh4DG338800 Rh5DG299800 Rh6AG195900 Rh6BG101300 Rh6BG101400 Rh6BG101500 Rh6CG173400 Rh6CG200800 Rh7AG275000 Rh7DG346800
rosa_wichuraiana	Rw4G010230 Rw5G035120 Rw6G007570 Rw6G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1545
Acc36I	ACCTGC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	826
AccBSI	CCGCTC	3 cut(s)	1955, 2089, 2252
AccI	GTMKAC	2 cut(s)	1377, 1804
AccII	CGCG	1 cut(s)	2685
AciI	CCGC	6 cut(s)	1337, 1955, 2087, 2252, 2683, 2783
AclI	AACGTT	1 cut(s)	1439
AclWI	GGATC	4 cut(s)	1076, 1431, 1997, 2855
AcsI	RAATTY	4 cut(s)	180, 1973, 2689, 2909
AcuI	CTGAAG	2 cut(s)	314, 2153
AcvI	CACGTG	1 cut(s)	1148
AcyI	GRCGYC	2 cut(s)	876, 1542
AfaI	GTAC	3 cut(s)	68, 925, 1294
AfiI	CCNNNNNNNGG	4 cut(s)	727, 826, 1702, 2478
AflIII	ACRYGT	2 cut(s)	1147, 2795
AhlI	ACTAGT	1 cut(s)	1604
AjnI	CCWGG	2 cut(s)	819, 1026
AjuI	GAANNNNNNNTTGG	2 cut(s)	1110, 1142
AluBI	AGCT	4 cut(s)	546, 628, 1322, 2414
AluI	AGCT	4 cut(s)	546, 628, 1322, 2414
Alw21I	GWGCWC	2 cut(s)	2500, 2682
Alw26I	GTCTC	3 cut(s)	1000, 1400, 1675
Alw44I	GTGCAC	1 cut(s)	2496
AlwI	GGATC	4 cut(s)	1076, 1431, 1997, 2855
AlwNI	CAGNNNCTG	1 cut(s)	970
AoxI	GGCC	2 cut(s)	822, 1762
ApaLI	GTGCAC	1 cut(s)	2496
ApeKI	GCWGC	2 cut(s)	1035, 1592
ApoI	RAATTY	4 cut(s)	180, 1973, 2689, 2909
ArsI	GACNNNNNNTTYG	6 cut(s)	1786, 1818, 2459, 2491, 2552, 2584
AseI	ATTAAT	1 cut(s)	882
Asp700I	GAANNNNTTC	4 cut(s)	513, 1209, 1490, 2289
AspA2I	CCTAGG	1 cut(s)	1852
AspLEI	GCGC	2 cut(s)	248, 2687
AspS9I	GGNCC	4 cut(s)	1130, 1957, 2126, 2695
AsuC2I	CCSGG	1 cut(s)	2648
AsuHPI	GGTGA	6 cut(s)	842, 1016, 1645, 2585, 2705, 2825
AsuII	TTCGAA	1 cut(s)	104
AvaII	GGWCC	4 cut(s)	1130, 1957, 2126, 2695
AvrII	CCTAGG	1 cut(s)	1852
BaeGI	GKGCMC	1 cut(s)	2500
BarI	GAAGNNNNNNTAC	2 cut(s)	1239, 1271
BauI	CACGAG	2 cut(s)	413, 2220
BbrPI	CACGTG	1 cut(s)	1148
BbsI	GAAGAC	1 cut(s)	1202
Bbv12I	GWGCWC	2 cut(s)	2500, 2682
BbvI	GCAGC	2 cut(s)	1047, 1579
BcgI	CGANNNNNNTGC	2 cut(s)	2536, 2570
BciT130I	CCWGG	2 cut(s)	821, 1028
BciVI	GTATCC	1 cut(s)	158
BclI	TGATCA	1 cut(s)	841
BcnI	CCSGG	1 cut(s)	2648
BcoDI	GTCTC	3 cut(s)	1000, 1400, 1675
BcuI	ACTAGT	1 cut(s)	1604
BfaI	CTAG	8 cut(s)	887, 1400, 1605, 1841, 1853, 2070, 2558, 2805
BfmI	CTRYAG	2 cut(s)	186, 2945
BfuAI	ACCTGC	1 cut(s)	268
BfuI	GTATCC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	2 cut(s)	1036, 1593
BlnI	CCTAGG	1 cut(s)	1852
BlpI	GCTNAGC	1 cut(s)	2142
BlsI	GCNGC	2 cut(s)	1037, 1594
Bme1390I	CCNGG	3 cut(s)	821, 1028, 2648
Bme18I	GGWCC	4 cut(s)	1130, 1957, 2126, 2695
BmgT120I	GGNCC	4 cut(s)	1130, 1957, 2126, 2695
BmiI	GGNNCC	2 cut(s)	1132, 1366
BmrFI	CCNGG	3 cut(s)	821, 1028, 2648
BpiI	GAAGAC	1 cut(s)	1202
BpmI	CTGGAG	3 cut(s)	112, 982, 2455
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	2142
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	2720
BpuMI	CCSGG	1 cut(s)	2648
Bsa29I	ATCGAT	1 cut(s)	1475
BsaAI	YACGTR	1 cut(s)	1148
BsaBI	GATNNNNATC	2 cut(s)	840, 2859
BsaHI	GRCGYC	2 cut(s)	876, 1542
BsaJI	CCNNGG	4 cut(s)	825, 1027, 1852, 2865
BsaXI	ACNNNNNCTCC	4 cut(s)	2418, 2448, 2769, 2799
Bsc4I	CCNNNNNNNGG	4 cut(s)	727, 826, 1702, 2478
Bse118I	RCCGGY	1 cut(s)	2137
Bse1I	ACTGG	3 cut(s)	999, 1381, 2835
Bse3DI	GCAATG	3 cut(s)	1260, 2459, 2728
Bse8I	GATNNNNATC	2 cut(s)	840, 2859
BseBI	CCWGG	2 cut(s)	821, 1028
BseCI	ATCGAT	1 cut(s)	1475
BseDI	CCNNGG	4 cut(s)	825, 1027, 1852, 2865
BseGI	GGATG	5 cut(s)	1037, 1171, 1842, 2269, 2860
BseJI	GATNNNNATC	2 cut(s)	840, 2859
BseLI	CCNNNNNNNGG	4 cut(s)	727, 826, 1702, 2478
BseMI	GCAATG	3 cut(s)	1260, 2459, 2728
BseMII	CTCAG	4 cut(s)	330, 714, 795, 1998
BseNI	ACTGG	3 cut(s)	999, 1381, 2835
BseRI	GAGGAG	1 cut(s)	1693
BseSI	GKGCMC	1 cut(s)	2500
BseXI	GCAGC	2 cut(s)	1047, 1579
BseYI	CCCAGC	1 cut(s)	29
BsgI	GTGCAG	2 cut(s)	295, 2204
Bsh1236I	CGCG	1 cut(s)	2685
Bsh1285I	CGRYCG	1 cut(s)	1341
BshFI	GGCC	2 cut(s)	824, 1764
BshVI	ATCGAT	1 cut(s)	1475
BsiEI	CGRYCG	1 cut(s)	1341
BsiHKAI	GWGCWC	2 cut(s)	2500, 2682
BsiSI	CCGG	2 cut(s)	2138, 2648
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	4 cut(s)	727, 826, 1702, 2478
BsmAI	GTCTC	3 cut(s)	1000, 1400, 1675
BsmBI	CGTCTC	2 cut(s)	1000, 1400
BsmFI	GGGAC	1 cut(s)	704
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	824, 1764
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	2500, 2682
Bsp143I	GATC	9 cut(s)	604, 841, 1081, 1423, 1936, 2002, 2147, 2617, 2860
Bsp1720I	GCTNAGC	1 cut(s)	2142
Bsp19I	CCATGG	2 cut(s)	825, 2865
BspACI	CCGC	6 cut(s)	1337, 1955, 2087, 2252, 2683, 2783
BspANI	GGCC	2 cut(s)	824, 1764
BspCNI	CTCAG	4 cut(s)	331, 715, 796, 1997
BspDI	ATCGAT	1 cut(s)	1475
BspFNI	CGCG	1 cut(s)	2685
BspLI	GGNNCC	2 cut(s)	1132, 1366
BspMAI	CTGCAG	1 cut(s)	2949
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	4 cut(s)	1076, 1431, 1997, 2855
BspQI	GCTCTTC	1 cut(s)	618
BspT104I	TTCGAA	1 cut(s)	104
BsrBI	CCGCTC	3 cut(s)	1955, 2089, 2252
BsrDI	GCAATG	3 cut(s)	1260, 2459, 2728
BsrFI	RCCGGY	1 cut(s)	2137
BsrI	ACTGG	3 cut(s)	999, 1381, 2835
BssAI	RCCGGY	1 cut(s)	2137
BssECI	CCNNGG	4 cut(s)	825, 1027, 1852, 2865
BssMI	GATC	9 cut(s)	604, 841, 1081, 1423, 1936, 2002, 2147, 2617, 2860
BssNI	GRCGYC	2 cut(s)	876, 1542
BssSI	CACGAG	2 cut(s)	413, 2220
BssT1I	CCWWGG	3 cut(s)	825, 1852, 2865
Bst2BI	CACGAG	2 cut(s)	413, 2220
Bst2UI	CCWGG	2 cut(s)	821, 1028
Bst4CI	ACNGT	6 cut(s)	500, 1054, 1995, 2410, 2495, 2672
Bst6I	CTCTTC	3 cut(s)	524, 618, 2872
BstACI	GRCGYC	2 cut(s)	876, 1542
BstAPI	GCANNNNNTGC	2 cut(s)	1334, 2191
BstBAI	YACGTR	1 cut(s)	1148
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	7 cut(s)	131, 383, 1345, 1766, 1919, 2139, 2240
BstDEI	CTNAG	7 cut(s)	339, 723, 804, 1214, 1984, 2142, 2168
BstDSI	CCRYGG	2 cut(s)	825, 2865
BstF5I	GGATG	5 cut(s)	1037, 1171, 1842, 2269, 2860
BstFNI	CGCG	1 cut(s)	2685
BstHHI	GCGC	2 cut(s)	248, 2687
BstKTI	GATC	9 cut(s)	607, 844, 1084, 1426, 1939, 2005, 2150, 2620, 2863
BstMAI	GTCTC	3 cut(s)	1000, 1400, 1675
BstMBI	GATC	9 cut(s)	604, 841, 1081, 1423, 1936, 2002, 2147, 2617, 2860
BstMCI	CGRYCG	1 cut(s)	1341
BstMWI	GCNNNNNNNGC	5 cut(s)	387, 1334, 2143, 2191, 2543
BstNI	CCWGG	2 cut(s)	821, 1028
BstNSI	RCATGY	5 cut(s)	29, 38, 1347, 2452, 2557
BstSCI	CCNGG	3 cut(s)	819, 1026, 2646
BstSFI	CTRYAG	2 cut(s)	186, 2945
BstSLI	GKGCMC	1 cut(s)	2500
BstUI	CGCG	1 cut(s)	2685
BstV1I	GCAGC	2 cut(s)	1047, 1579
BstV2I	GAAGAC	1 cut(s)	1202
BstX2I	RGATCY	2 cut(s)	604, 1423
BstYI	RGATCY	2 cut(s)	604, 1423
Bsu15I	ATCGAT	1 cut(s)	1475
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	824, 1764
BsuTUI	ATCGAT	1 cut(s)	1475
BtgI	CCRYGG	2 cut(s)	825, 2865
BtgZI	GCGATG	1 cut(s)	2561
BtsCI	GGATG	5 cut(s)	1037, 1171, 1842, 2269, 2860
BtsIMutI	CAGTG	3 cut(s)	505, 2500, 2842
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	7 cut(s)	131, 383, 1345, 1766, 1919, 2139, 2240
CaiI	CAGNNNCTG	1 cut(s)	970
CfoI	GCGC	2 cut(s)	248, 2687
Cfr10I	RCCGGY	1 cut(s)	2137
Cfr13I	GGNCC	4 cut(s)	1130, 1957, 2126, 2695
ClaI	ATCGAT	1 cut(s)	1475
CseI	GACGC	2 cut(s)	648, 884
Csp6I	GTAC	3 cut(s)	67, 924, 1293
CspCI	CAANNNNNGTGG	2 cut(s)	1123, 1158
CviQI	GTAC	3 cut(s)	67, 924, 1293
DdeI	CTNAG	7 cut(s)	339, 723, 804, 1214, 1984, 2142, 2168
DpnI	GATC	9 cut(s)	606, 843, 1083, 1425, 1938, 2004, 2149, 2619, 2862
DpnII	GATC	9 cut(s)	604, 841, 1081, 1423, 1936, 2002, 2147, 2617, 2860
Eam1104I	CTCTTC	3 cut(s)	524, 618, 2872
EarI	CTCTTC	3 cut(s)	524, 618, 2872
Eco130I	CCWWGG	3 cut(s)	825, 1852, 2865
Eco147I	AGGCCT	1 cut(s)	1764
Eco47I	GGWCC	4 cut(s)	1130, 1957, 2126, 2695
Eco57I	CTGAAG	2 cut(s)	314, 2153
Eco72I	CACGTG	1 cut(s)	1148
EcoRI	GAATTC	1 cut(s)	1973
EcoRII	CCWGG	2 cut(s)	819, 1026
EcoT14I	CCWWGG	3 cut(s)	825, 1852, 2865
EcoT22I	ATGCAT	2 cut(s)	1349, 2196
ErhI	CCWWGG	3 cut(s)	825, 1852, 2865
Esp3I	CGTCTC	2 cut(s)	1000, 1400
FalI	AAGNNNNNCTT	6 cut(s)	497, 529, 530, 562, 612, 644
FaqI	GGGAC	1 cut(s)	704
FauI	CCCGC	1 cut(s)	2094
FauNDI	CATATG	1 cut(s)	2233
FbaI	TGATCA	1 cut(s)	841
FblI	GTMKAC	2 cut(s)	1377, 1804
Fnu4HI	GCNGC	2 cut(s)	1036, 1593
FokI	GGATG	5 cut(s)	1044, 1178, 1849, 2276, 2867
Fsp4HI	GCNGC	2 cut(s)	1036, 1593
FspBI	CTAG	8 cut(s)	887, 1400, 1605, 1841, 1853, 2070, 2558, 2805
GlaI	GCGC	2 cut(s)	247, 2686
GluI	GCNGC	2 cut(s)	1036, 1593
GsaI	CCCAGC	1 cut(s)	33
GsuI	CTGGAG	3 cut(s)	112, 982, 2455
HaeIII	GGCC	2 cut(s)	824, 1764
HapII	CCGG	2 cut(s)	2138, 2648
HgaI	GACGC	2 cut(s)	648, 884
HhaI	GCGC	2 cut(s)	248, 2687
Hin1I	GRCGYC	2 cut(s)	876, 1542
Hin6I	GCGC	2 cut(s)	246, 2685
HinP1I	GCGC	2 cut(s)	246, 2685
HincII	GTYRAC	6 cut(s)	867, 936, 1570, 1805, 2346, 2491
HindII	GTYRAC	6 cut(s)	867, 936, 1570, 1805, 2346, 2491
HindIII	AAGCTT	1 cut(s)	544
HpaI	GTTAAC	1 cut(s)	936
HpaII	CCGG	2 cut(s)	2138, 2648
HphI	GGTGA	6 cut(s)	842, 1016, 1645, 2585, 2705, 2825
Hpy188III	TCNNGA	9 cut(s)	91, 429, 535, 636, 1315, 1560, 2010, 2439, 2472
Hpy99I	CGWCG	2 cut(s)	878, 1547
HpyCH4III	ACNGT	6 cut(s)	500, 1054, 1995, 2410, 2495, 2672
HpyCH4IV	ACGT	6 cut(s)	926, 1147, 1439, 1542, 2307, 2795
HpyF10VI	GCNNNNNNNGC	5 cut(s)	387, 1334, 2143, 2191, 2543
HpyF3I	CTNAG	7 cut(s)	339, 723, 804, 1214, 1984, 2142, 2168
HpySE526I	ACGT	6 cut(s)	926, 1147, 1439, 1542, 2307, 2795
Hsp92I	GRCGYC	2 cut(s)	876, 1542
HspAI	GCGC	2 cut(s)	246, 2685
KroI	GCCGGC	1 cut(s)	2137
KroNI	GCCGGC	1 cut(s)	2139
Ksp22I	TGATCA	1 cut(s)	841
KspAI	GTTAAC	1 cut(s)	936
Kzo9I	GATC	9 cut(s)	604, 841, 1081, 1423, 1936, 2002, 2147, 2617, 2860
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	1 cut(s)	93
Lsp1109I	GCAGC	2 cut(s)	1047, 1579
MaeI	CTAG	8 cut(s)	887, 1400, 1605, 1841, 1853, 2070, 2558, 2805
MaeII	ACGT	6 cut(s)	926, 1147, 1439, 1542, 2307, 2795
MaeIII	GTNAC	5 cut(s)	1017, 1651, 2404, 2822, 2882
MalI	GATC	9 cut(s)	606, 843, 1083, 1425, 1938, 2004, 2149, 2619, 2862
MbiI	CCGCTC	3 cut(s)	1955, 2089, 2252
MboI	GATC	9 cut(s)	604, 841, 1081, 1423, 1936, 2002, 2147, 2617, 2860
MfeI	CAATTG	2 cut(s)	459, 1232
MflI	RGATCY	2 cut(s)	604, 1423
MhlI	GDGCHC	2 cut(s)	2500, 2682
MlyI	GAGTC	4 cut(s)	572, 1659, 1715, 2462
MmeI	TCCRAC	1 cut(s)	1858
Mph1103I	ATGCAT	2 cut(s)	1349, 2196
MroNI	GCCGGC	1 cut(s)	2137
MroXI	GAANNNNTTC	4 cut(s)	513, 1209, 1490, 2289
MseI	TTAA	8 cut(s)	687, 882, 935, 1071, 1220, 1866, 1944, 1962
MslI	CAYNNNNRTG	6 cut(s)	121, 199, 353, 438, 1475, 2849
MspI	CCGG	2 cut(s)	2138, 2648
MspR9I	CCNGG	3 cut(s)	821, 1028, 2648
MunI	CAATTG	2 cut(s)	459, 1232
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	2 cut(s)	821, 1028
MvnI	CGCG	1 cut(s)	2685
MwoI	GCNNNNNNNGC	5 cut(s)	387, 1334, 2143, 2191, 2543
NaeI	GCCGGC	1 cut(s)	2139
NciI	CCSGG	1 cut(s)	2648
NcoI	CCATGG	2 cut(s)	825, 2865
NdeI	CATATG	1 cut(s)	2233
NdeII	GATC	9 cut(s)	604, 841, 1081, 1423, 1936, 2002, 2147, 2617, 2860
NgoMIV	GCCGGC	1 cut(s)	2137
NlaIV	GGNNCC	2 cut(s)	1132, 1366
NmuCI	GTSAC	3 cut(s)	1651, 2404, 2822
NsiI	ATGCAT	2 cut(s)	1349, 2196
NspI	RCATGY	5 cut(s)	29, 38, 1347, 2452, 2557
NspV	TTCGAA	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	1347
PceI	AGGCCT	1 cut(s)	1764
PciSI	GCTCTTC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	1481
PctI	GAATGC	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	2139
PdmI	GAANNNNTTC	4 cut(s)	513, 1209, 1490, 2289
PfeI	GAWTC	6 cut(s)	857, 1463, 1556, 1578, 1814, 2080
PflMI	CCANNNNNTGG	1 cut(s)	826
PkrI	GCNGC	2 cut(s)	1037, 1594
PleI	GAGTC	4 cut(s)	572, 1658, 1714, 2462
PmaCI	CACGTG	1 cut(s)	1148
PmlI	CACGTG	1 cut(s)	1148
PpsI	GAGTC	4 cut(s)	572, 1658, 1714, 2462
Ppu21I	YACGTR	1 cut(s)	1148
PshBI	ATTAAT	1 cut(s)	882
Psp1406I	AACGTT	1 cut(s)	1439
Psp6I	CCWGG	2 cut(s)	819, 1026
PspCI	CACGTG	1 cut(s)	1148
PspFI	CCCAGC	1 cut(s)	29
PspGI	CCWGG	2 cut(s)	819, 1026
PspN4I	GGNNCC	2 cut(s)	1132, 1366
PspPI	GGNCC	4 cut(s)	1130, 1957, 2126, 2695
PsrI	GAACNNNNNNTAC	2 cut(s)	661, 693
PstI	CTGCAG	1 cut(s)	2949
PstNI	CAGNNNCTG	1 cut(s)	970
PsuI	RGATCY	2 cut(s)	604, 1423
RsaI	GTAC	3 cut(s)	68, 925, 1294
RsaNI	GTAC	3 cut(s)	67, 924, 1293
RseI	CAYNNNNRTG	6 cut(s)	121, 199, 353, 438, 1475, 2849
SalI	GTCGAC	1 cut(s)	1803
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	8 cut(s)	687, 882, 935, 1071, 1220, 1866, 1944, 1962
SatI	GCNGC	2 cut(s)	1036, 1593
Sau3AI	GATC	9 cut(s)	604, 841, 1081, 1423, 1936, 2002, 2147, 2617, 2860
Sau96I	GGNCC	4 cut(s)	1130, 1957, 2126, 2695
SchI	GAGTC	4 cut(s)	572, 1659, 1715, 2462
ScrFI	CCNGG	3 cut(s)	821, 1028, 2648
SduI	GDGCHC	2 cut(s)	2500, 2682
SfcI	CTRYAG	2 cut(s)	186, 2945
SfuI	TTCGAA	1 cut(s)	104
SinI	GGWCC	4 cut(s)	1130, 1957, 2126, 2695
SmiMI	CAYNNNNRTG	6 cut(s)	121, 199, 353, 438, 1475, 2849
SmlI	CTYRAG	1 cut(s)	2699
SmoI	CTYRAG	1 cut(s)	2699
SpeI	ACTAGT	1 cut(s)	1604
SphI	GCATGC	1 cut(s)	1347
SseBI	AGGCCT	1 cut(s)	1764
SsiI	CCGC	6 cut(s)	1337, 1955, 2087, 2252, 2683, 2783
SspI	AATATT	4 cut(s)	1044, 1311, 1746, 2032
SspMI	CTAG	8 cut(s)	887, 1400, 1605, 1841, 1853, 2070, 2558, 2805
StuI	AGGCCT	1 cut(s)	1764
StyD4I	CCNGG	3 cut(s)	819, 1026, 2646
StyI	CCWWGG	3 cut(s)	825, 1852, 2865
TaaI	ACNGT	6 cut(s)	500, 1054, 1995, 2410, 2495, 2672
TaiI	ACGT	6 cut(s)	929, 1150, 1442, 1545, 2310, 2798
TaqI	TCGA	8 cut(s)	104, 229, 351, 1475, 1484, 1804, 2337, 2667
TatI	WGTACW	1 cut(s)	1292
TfiI	GAWTC	6 cut(s)	857, 1463, 1556, 1578, 1814, 2080
Tru1I	TTAA	8 cut(s)	687, 882, 935, 1071, 1220, 1866, 1944, 1962
Tru9I	TTAA	8 cut(s)	687, 882, 935, 1071, 1220, 1866, 1944, 1962
TscAI	CASTG	3 cut(s)	505, 2500, 2842
TseFI	GTSAC	3 cut(s)	1651, 2404, 2822
TseI	GCWGC	2 cut(s)	1035, 1592
Tsp45I	GTSAC	3 cut(s)	1651, 2404, 2822
TspGWI	ACGGA	3 cut(s)	1377, 2215, 2513
TspRI	CASTG	3 cut(s)	505, 2500, 2842
Van91I	CCANNNNNTGG	1 cut(s)	826
VneI	GTGCAC	1 cut(s)	2496
VpaK11BI	GGWCC	4 cut(s)	1130, 1957, 2126, 2695
VspI	ATTAAT	1 cut(s)	882
XapI	RAATTY	4 cut(s)	180, 1973, 2689, 2909
XceI	RCATGY	5 cut(s)	29, 38, 1347, 2452, 2557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1593
XmaJI	CCTAGG	1 cut(s)	1852
XmiI	GTMKAC	2 cut(s)	1377, 1804
XmnI	GAANNNNTTC	4 cut(s)	513, 1209, 1490, 2289
XspI	CTAG	8 cut(s)	887, 1400, 1605, 1841, 1853, 2070, 2558, 2805
ZraI	GACGTC	1 cut(s)	1543
Zsp2I	ATGCAT	2 cut(s)	1349, 2196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.