Rroxscaffold_2G00125280

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002409
Physical Location & Seq
Forward (+)
59962537 .. 59974731
12195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125280.1

Sequence Viewer

Length: 345 bp
ATGCCGGATGATGTTCTCTGCTCAGGTCAAGATAGTGATCCTGCGCAATCAAAGACTGCATTTGTTACGTTCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGCTCAAGCCCACCAAAATACCTTTTGGAGTCAACTCGATTGGAGGTCGGATGAGAGAGATATCGGCCGGTGAAGGAAGAGCAGCTCGGGCGAATTCCGGTGGAGCTACGCAGCTTCTCGGCCTCCGGCGCCTTCCACGATATAATGATCTCAGCAATGCATTATCTATAGCAGCGACTTACGTTTCCACTATAGACATCCAATCTCCGGGCGTTGTTCGGGATTTGACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

114

Amino Acids

12.03

Weight (kDa)

8.93

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 237
AclWI GGATC 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 2 cut(s) 73, 92
AluBI AGCT 4 cut(s) 86, 194, 215, 223
AluI AGCT 4 cut(s) 86, 194, 215, 223
AlwI GGATC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 195
AoxI GGCC 2 cut(s) 174, 229
ApeKI GCWGC 3 cut(s) 191, 220, 281
ApoI RAATTY 1 cut(s) 202
AspLEI GCGC 2 cut(s) 46, 240
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 195
BanI GGYRCC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 203, 232, 293
BcnI CCSGG 1 cut(s) 318
BfmI CTRYAG 2 cut(s) 276, 300
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 3 cut(s) 192, 221, 282
BlsI GCNGC 3 cut(s) 193, 222, 283
Bme1390I CCNGG 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse118I RCCGGY 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 36
BseGI GGATG 4 cut(s) 13, 82, 165, 306
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 36, 274
BseX3I CGGCCG 1 cut(s) 174
BseXI GCAGC 3 cut(s) 203, 232, 293
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 176, 231
BshNI GGYRCC 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 195
BsiSI CCGG 5 cut(s) 5, 177, 207, 235, 317
BslI CCNNNNNNNGG 1 cut(s) 316
BsnI GGCC 2 cut(s) 176, 231
BsoBI CYCGRG 1 cut(s) 195
Bsp143I GATC 2 cut(s) 37, 256
BspANI GGCC 2 cut(s) 176, 231
BspCNI CTCAG 2 cut(s) 35, 273
BspLI GGNNCC 1 cut(s) 239
BspPI GGATC 1 cut(s) 32
BspQI GCTCTTC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssMI GATC 2 cut(s) 37, 256
BssNI GRCGYC 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 22, 260
BstF5I GGATG 4 cut(s) 13, 82, 165, 306
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 2 cut(s) 46, 240
BstKTI GATC 2 cut(s) 40, 259
BstMBI GATC 2 cut(s) 37, 256
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 197, 237
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 2 cut(s) 276, 300
BstV1I GCAGC 3 cut(s) 203, 232, 293
BstZI CGGCCG 1 cut(s) 174
BsuRI GGCC 2 cut(s) 176, 231
BtsCI GGATG 4 cut(s) 13, 82, 165, 306
CfoI GCGC 2 cut(s) 46, 240
Cfr10I RCCGGY 1 cut(s) 176
CviJI RGCY 7 cut(s) 86, 118, 176, 194, 215, 223, 231
CviKI_1 RGCY 7 cut(s) 86, 118, 176, 194, 215, 223, 231
DdeI CTNAG 2 cut(s) 22, 260
DinI GGCGCC 1 cut(s) 239
DpnI GATC 2 cut(s) 39, 258
DpnII GATC 2 cut(s) 37, 256
EaeI YGGCCR 1 cut(s) 174
EagI CGGCCG 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 174
Eco32I GATATC 1 cut(s) 171
Eco52I CGGCCG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 202
EcoRV GATATC 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 271
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
FaiI YATR 3 cut(s) 252, 278, 302
Fnu4HI GCNGC 3 cut(s) 192, 221, 282
FokI GGATG 4 cut(s) 20, 89, 172, 293
Fsp4HI GCNGC 3 cut(s) 192, 221, 282
FspI TGCGCA 1 cut(s) 45
GlaI GCGC 2 cut(s) 45, 239
GluI GCNGC 3 cut(s) 192, 221, 282
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 176, 231
HapII CCGG 5 cut(s) 5, 177, 207, 235, 317
HhaI GCGC 2 cut(s) 46, 240
Hin1I GRCGYC 1 cut(s) 238
Hin6I GCGC 2 cut(s) 44, 238
HinP1I GCGC 2 cut(s) 44, 238
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 138
HpaII CCGG 5 cut(s) 5, 177, 207, 235, 317
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 3 cut(s) 29, 89, 329
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 176, 251
HpyCH4IV ACGT 2 cut(s) 68, 291
HpyCH4V TGCA 2 cut(s) 59, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 237
HpyF3I CTNAG 2 cut(s) 22, 260
HpySE526I ACGT 2 cut(s) 68, 291
Hsp92I GRCGYC 1 cut(s) 238
HspAI GCGC 2 cut(s) 44, 238
KasI GGCGCC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 37, 256
LguI GCTCTTC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 7 cut(s) 9, 18, 54, 190, 220, 248, 330
Lsp1109I GCAGC 3 cut(s) 203, 232, 293
LweI GCATC 1 cut(s) 67
MaeII ACGT 2 cut(s) 68, 291
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 39, 258
MboI GATC 2 cut(s) 37, 256
MboII GAAGA 1 cut(s) 198
MluCI AATT 2 cut(s) 202, 340
Mly113I GGCGCC 1 cut(s) 238
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 2 cut(s) 146, 242
Mph1103I ATGCAT 1 cut(s) 271
MspI CCGG 5 cut(s) 5, 177, 207, 235, 317
MspR9I CCNGG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 197, 237
NarI GGCGCC 1 cut(s) 238
NciI CCSGG 1 cut(s) 318
NdeII GATC 2 cut(s) 37, 256
NlaIV GGNNCC 1 cut(s) 239
NmeAIII GCCGAG 1 cut(s) 207
NsbI TGCGCA 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 181
PkrI GCNGC 3 cut(s) 193, 222, 283
PleI GAGTC 1 cut(s) 146
PluTI GGCGCC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 181
SatI GCNGC 3 cut(s) 192, 221, 282
Sau3AI GATC 2 cut(s) 37, 256
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 318
SetI ASST 9 cut(s) 28, 71, 88, 133, 157, 196, 217, 225, 294
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 2 cut(s) 276, 300
SfoI GGCGCC 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 202, 340
SspDI GGCGCC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 316
TaiI ACGT 2 cut(s) 71, 294
TaqI TCGA 1 cut(s) 146
TasI AATT 2 cut(s) 202, 340
TseI GCWGC 3 cut(s) 191, 220, 281
XapI RAATTY 1 cut(s) 202
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.