Rh6AG195900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002409
Physical Location & Seq
Forward (+)
35181379 .. 35195305
13927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG195900.1

Sequence Viewer

Length: 666 bp
ATGATCGAGGGGAATGGGCTGCTCATACAGTATGAAACCGGCTATGGTCATGGGCCAACAACAACAATGGGCCCGACAAAAGGAACGAATATAACGATAATCCAACTATCGGACTCAGTCTCGGTTAGGCACGGTCAAAATCCCTCATGGAAGTCGCGTATCATATCACCAGCGGACTTTGTTGACACTGTTAAACTACTCCGAAGGTCACACTTGATGGCTGCTGCCGGTATTGGTCAAGGCAATCTTGATCTAATTGGATGCACAAGTGTGTATGATGATGTTTGCAGTATGATGGTCCGTTGTCTAGACCCCCTGAATGAGAGAGTCACCATACATGGCAAGCAATTCAATGTAAGACCGAGTGATTTCTCCCAGATAATGGGGATCCGTGATGGAGTTGAAGATGTGGAGTTAAGTGGATCAATCAATGATGTAAGATCAACACTAGTGTTGGTGAATCTACAACACCAATACCTCCCCACGAATGAACTTCTACTACAACTCCAGAAGTTCAAGGAACTCAAGGAAGTCAAGCAACCGAGCTTGAAGATTATGGAAGTGTGGAAAGCATCCTTGAGCCGCCGATTCGACCTCCTTCTTCTTCCCGGAGATCTCTACTTCTCCAACTCCTCTCAGTTGGGTGGAAGAGCTGGTTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

221

Amino Acids

24.4

Weight (kDa)

6.96

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AccII CGCG 1 cut(s) 157
AciI CCGC 2 cut(s) 173, 583
AclWI GGATC 3 cut(s) 382, 395, 430
AfiI CCNNNNNNNGG 3 cut(s) 80, 109, 382
AgsI TTSAA 4 cut(s) 352, 404, 517, 550
AhlI ACTAGT 1 cut(s) 448
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 2 cut(s) 546, 653
AluI AGCT 2 cut(s) 546, 653
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 3 cut(s) 382, 395, 430
AoxI GGCC 2 cut(s) 53, 70
ApaI GGGCCC 1 cut(s) 74
ApeKI GCWGC 3 cut(s) 19, 221, 224
AspS9I GGNCC 4 cut(s) 53, 70, 71, 298
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 3 cut(s) 159, 322, 469
AvaII GGWCC 1 cut(s) 298
BaeGI GKGCMC 1 cut(s) 74
BamHI GGATCC 1 cut(s) 387
BanII GRGCYC 1 cut(s) 74
BbvI GCAGC 3 cut(s) 6, 208, 211
BccI CCATC 3 cut(s) 211, 289, 389
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 1 cut(s) 124
BcuI ACTAGT 1 cut(s) 448
BfaI CTAG 2 cut(s) 308, 449
BglII AGATCT 1 cut(s) 613
BisI GCNGC 4 cut(s) 20, 222, 225, 583
BlsI GCNGC 4 cut(s) 21, 223, 226, 584
Bme1390I CCNGG 1 cut(s) 609
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 4 cut(s) 53, 70, 71, 298
BmiI GGNNCC 2 cut(s) 72, 389
BmrFI CCNGG 1 cut(s) 609
BmsI GCATC 2 cut(s) 251, 581
BpmI CTGGAG 1 cut(s) 491
BpuEI CTTGAG 2 cut(s) 509, 598
BpuMI CCSGG 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 109, 382
Bse118I RCCGGY 2 cut(s) 38, 227
BseGI GGATG 2 cut(s) 266, 572
BseLI CCNNNNNNNGG 3 cut(s) 80, 109, 382
BseMII CTCAG 2 cut(s) 129, 650
BseRI GAGGAG 1 cut(s) 622
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 3 cut(s) 6, 208, 211
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 2 cut(s) 55, 72
BsiSI CCGG 3 cut(s) 39, 228, 609
BslI CCNNNNNNNGG 3 cut(s) 80, 109, 382
BsmAI GTCTC 1 cut(s) 124
BsnI GGCC 2 cut(s) 55, 72
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 6 cut(s) 3, 250, 387, 422, 440, 613
BspACI CCGC 2 cut(s) 173, 583
BspANI GGCC 2 cut(s) 55, 72
BspCNI CTCAG 2 cut(s) 128, 649
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 72, 389
BspPI GGATC 3 cut(s) 382, 395, 430
BspQI GCTCTTC 1 cut(s) 643
BsrFI RCCGGY 2 cut(s) 38, 227
BssAI RCCGGY 2 cut(s) 38, 227
BssMI GATC 6 cut(s) 3, 250, 387, 422, 440, 613
Bst4CI ACNGT 3 cut(s) 30, 134, 190
Bst6I CTCTTC 1 cut(s) 643
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 3 cut(s) 115, 636, 663
BstF5I GGATG 2 cut(s) 266, 572
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 6 cut(s) 6, 253, 390, 425, 443, 616
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 6 cut(s) 3, 250, 387, 422, 440, 613
BstSCI CCNGG 1 cut(s) 607
BstSLI GKGCMC 1 cut(s) 74
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 6, 208, 211
BstX2I RGATCY 2 cut(s) 387, 613
BstYI RGATCY 2 cut(s) 387, 613
BsuRI GGCC 2 cut(s) 55, 72
BtsCI GGATG 2 cut(s) 266, 572
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 344
Cfr10I RCCGGY 2 cut(s) 38, 227
Cfr13I GGNCC 4 cut(s) 53, 70, 71, 298
CviAII CATG 3 cut(s) 50, 147, 338
CviJI RGCY 8 cut(s) 19, 42, 55, 72, 221, 546, 582, 653
CviKI_1 RGCY 8 cut(s) 19, 42, 55, 72, 221, 546, 582, 653
DdeI CTNAG 3 cut(s) 115, 636, 663
DpnI GATC 6 cut(s) 5, 252, 389, 424, 442, 615
DpnII GATC 6 cut(s) 3, 250, 387, 422, 440, 613
Eam1104I CTCTTC 1 cut(s) 643
EarI CTCTTC 1 cut(s) 643
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 74
FaeI CATG 3 cut(s) 53, 150, 341
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FatI CATG 3 cut(s) 49, 146, 337
Fnu4HI GCNGC 4 cut(s) 20, 222, 225, 583
FokI GGATG 2 cut(s) 273, 559
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 4 cut(s) 20, 222, 225, 583
FspBI CTAG 2 cut(s) 308, 449
GluI GCNGC 4 cut(s) 20, 222, 225, 583
GsuI CTGGAG 1 cut(s) 491
HaeIII GGCC 2 cut(s) 55, 72
HapII CCGG 3 cut(s) 39, 228, 609
Hin1II CATG 3 cut(s) 53, 150, 341
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 4 cut(s) 113, 327, 460, 588
HpaII CCGG 3 cut(s) 39, 228, 609
HphI GGTGA 3 cut(s) 159, 322, 469
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 112, 203
Hpy188III TCNNGA 3 cut(s) 248, 308, 508
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 198, 608
HpyCH4III ACNGT 3 cut(s) 30, 134, 190
HpyCH4V TGCA 2 cut(s) 264, 288
HpyF3I CTNAG 3 cut(s) 115, 636, 663
Hsp92II CATG 3 cut(s) 53, 150, 341
Kzo9I GATC 6 cut(s) 3, 250, 387, 422, 440, 613
LguI GCTCTTC 1 cut(s) 643
LpnPI CCDG 8 cut(s) 52, 183, 241, 329, 389, 521, 622, 639
Lsp1109I GCAGC 3 cut(s) 6, 208, 211
LweI GCATC 2 cut(s) 251, 581
MaeI CTAG 2 cut(s) 308, 449
MaeIII GTNAC 2 cut(s) 207, 328
MalI GATC 6 cut(s) 5, 252, 389, 424, 442, 615
MboI GATC 6 cut(s) 3, 250, 387, 422, 440, 613
MboII GAAGA 6 cut(s) 416, 562, 593, 596, 651, 660
MflI RGATCY 2 cut(s) 387, 613
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 2 cut(s) 255, 347
MlyI GAGTC 2 cut(s) 107, 336
MmeI TCCRAC 2 cut(s) 127, 651
MnlI CCTC 4 cut(s) 154, 488, 605, 643
MseI TTAA 2 cut(s) 192, 416
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 3 cut(s) 39, 228, 609
MspR9I CCNGG 1 cut(s) 609
MvnI CGCG 1 cut(s) 157
NciI CCSGG 1 cut(s) 609
NdeII GATC 6 cut(s) 3, 250, 387, 422, 440, 613
NlaIII CATG 3 cut(s) 53, 150, 341
NlaIV GGNNCC 2 cut(s) 72, 389
NmuCI GTSAC 2 cut(s) 207, 328
OliI CACNNNNGTG 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 643
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PfeI GAWTC 2 cut(s) 460, 588
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 4 cut(s) 21, 223, 226, 584
PleI GAGTC 2 cut(s) 107, 335
PpsI GAGTC 2 cut(s) 107, 335
PspN4I GGNNCC 2 cut(s) 72, 389
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 4 cut(s) 53, 70, 71, 298
PsrI GAACNNNNNNTAC 2 cut(s) 483, 515
PsuI RGATCY 2 cut(s) 387, 613
PsyI GACNNNGTC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 643
SaqAI TTAA 2 cut(s) 192, 416
SatI GCNGC 4 cut(s) 20, 222, 225, 583
Sau3AI GATC 6 cut(s) 3, 250, 387, 422, 440, 613
Sau96I GGNCC 4 cut(s) 53, 70, 71, 298
SchI GAGTC 2 cut(s) 107, 336
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 1 cut(s) 74
SetI ASST 5 cut(s) 209, 480, 548, 597, 655
SfaNI GCATC 2 cut(s) 251, 581
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 2 cut(s) 524, 577
SmoI CTYRAG 2 cut(s) 524, 577
SpeI ACTAGT 1 cut(s) 448
Sse9I AATT 2 cut(s) 255, 347
SsiI CCGC 2 cut(s) 173, 583
SspMI CTAG 2 cut(s) 308, 449
StyD4I CCNGG 1 cut(s) 607
TaaI ACNGT 3 cut(s) 30, 134, 190
TaqI TCGA 2 cut(s) 6, 591
TaqII GACCGA 1 cut(s) 376
TasI AATT 2 cut(s) 255, 347
TauI GCSGC 1 cut(s) 585
TfiI GAWTC 2 cut(s) 460, 588
Tru1I TTAA 2 cut(s) 192, 416
Tru9I TTAA 2 cut(s) 192, 416
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 2 cut(s) 207, 328
TseI GCWGC 3 cut(s) 19, 221, 224
Tsp45I GTSAC 2 cut(s) 207, 328
TspDTI ATGAA 2 cut(s) 48, 504
TspGWI ACGGA 2 cut(s) 290, 380
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 298
XbaI TCTAGA 1 cut(s) 307
XspI CTAG 2 cut(s) 308, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.