Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002409

Physical Location & Seq

Genomic Coordinates Forward (+)

23731398 .. 23733687

Gene Structure 2290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033142

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGACCCACCATTGGAGCATTTGTTCTTGGCGAGCGAGGCGGCGGCGACTCGGTGATCGAGCTGAGACTTTCCGGCGGAAGTGGAGGGCACAGAAAGCCTCTCTTTGTACAGCTATTAAGAAACAAACCCATTACACTGAAATCCTCCAAATCCACTCTACCCACAACAACCAAGCCAAGTTTCACAAACCCAACAATTCAAAACATAAAACCATCGAAAATGAGACCCACCATCGGAGCATTTGTTCTTGGCGAGCGAGGCAGCGGCGGCGGCGGCGGCACTGTGATCGAGCTGAGACTTTCTGGCGGAAGTGGAGGGCACAGAGAGCCTCCCTTTCTCACCGACGAGCTCTGTTTTCGACGACCCACCTCCGCATTCCCAATACATGGTCTAGAATTCGAGCCCCCCTTTCGATTCTGGGCTCTGGGGTTTGGGAAAATAAGGAGGGTAATCAAGCTATGTACATGGGTTGGTGGTGGATTTGATTCAAATGGTTGGTTTTGGAAGAAAGGTAGATATTACAATGTCACAGTAGCTAAACATGGGGGAGTGATTGTATCAACAGCCGACATGCAATGCCTACTGCTTGGTCAACTTTTGAGCGACTATGTCATCAACGTGTTTGCAAGCTACCTTAATGAAGAAGGGTTTGGGGATTGGTACTTCTCAACCTATTTTGGTGCAAGCTCTAATGTGAAAAATATTCAGATGACTAGAATGGAATGGATTGAACACATCTGTCACGTTAGCATGTTGGATAGATTCAAGGGGAAATTGAGGATGTGCAGAAGGATATACATTCCTCTGCGCGATCCTGCATCTGAGGGGCATTGGTATTTGTTGGTGGTGCATAAAGACTCCAGATTTGGAGAAATCGTTGACAGTGCCCCTGATGATGATAGGACTTCATTTCGTGAGGAAGTTGCAAGAATGGCGATGAAGATCCTAGACAATGTTTTTGGTGACGATATTAGGGAGGAAATGGGAGTGCTACCTCATTTTATTGAACTTCCATTCATGGATAAGCACAACCACCCGGTTCAAAGAAACGCGTTCGACTGTGGTGTGTTTGTAATAAGAAACATGCAGCATTATGGCACACAATGGAATGAGGATGTGAGTGACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

378

Amino Acids

42.52

Weight (kDa)

8.95

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	261 - 369	1.1e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002409)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002091 RLG00000004454 RLG00000033140 RLG00000033141 RLG00000033142
rosa_multiflora	Rmu_sc0000077.1_g000043 Rmu_sc0000361.1_g000004 Rmu_sc0002048.1_g000017 Rmu_sc0007180.1_g000005 Rmu_sc0007223.1_g000007 Rmu_sc0008769.1_g000009
rosa_roxburghii	Rroxscaffold_2G00118160 Rroxscaffold_2G00118170 Rroxscaffold_2G00125280 Rroxscaffold_3G00237010 Rroxscaffold_5G00349960 Rroxscaffold_5G00349970 Rroxscaffold_5G00362900 Rroxscaffold_7G00197790 Rroxscaffold_7G00197870
rosa_rugosa	Rorug07G0208000
rosa_samantha	Rh1BG098800 Rh1CG156600 Rh2DG571500 Rh4AG336300 Rh4BG133300 Rh4BG219500 Rh4DG120500 Rh4DG338800 Rh5DG299800 Rh6AG195900 Rh6BG101300 Rh6BG101400 Rh6BG101500 Rh6CG173400 Rh6CG200800 Rh7AG275000 Rh7DG346800
rosa_wichuraiana	Rw4G010230 Rw5G035120 Rw6G007570 Rw6G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccII	CGCG	2 cut(s)	813, 1055
AclWI	GGATC	2 cut(s)	809, 940
AcsI	RAATTY	1 cut(s)	398
AfaI	GTAC	3 cut(s)	111, 466, 665
AfiI	CCNNNNNNNGG	3 cut(s)	14, 236, 389
AflIII	ACRYGT	2 cut(s)	621, 1053
AgsI	TTSAA	6 cut(s)	203, 492, 734, 769, 1010, 1046
AjuI	GAANNNNNNNTTGG	4 cut(s)	167, 199, 636, 668
AloI	GAACNNNNNNTCC	4 cut(s)	9, 41, 231, 263
AluBI	AGCT	8 cut(s)	64, 115, 295, 352, 460, 539, 633, 690
AluI	AGCT	8 cut(s)	64, 115, 295, 352, 460, 539, 633, 690
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	3 cut(s)	61, 220, 292
AlwI	GGATC	2 cut(s)	809, 940
ApeKI	GCWGC	2 cut(s)	264, 1090
ApoI	RAATTY	1 cut(s)	398
ArsI	GACNNNNNNTTYG	4 cut(s)	851, 883, 944, 976
AspLEI	GCGC	1 cut(s)	813
AsuC2I	CCSGG	1 cut(s)	1040
AsuHPI	GGTGA	3 cut(s)	67, 334, 977
BaeGI	GKGCMC	3 cut(s)	93, 324, 892
BanII	GRGCYC	3 cut(s)	354, 408, 427
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	276, 1102
BccI	CCATC	2 cut(s)	223, 242
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BcnI	CCSGG	1 cut(s)	1040
BcoDI	GTCTC	3 cut(s)	61, 220, 292
BfaI	CTAG	3 cut(s)	395, 717, 950
BisI	GCNGC	9 cut(s)	43, 46, 265, 268, 271, 274, 277, 280, 1091
BlsI	GCNGC	9 cut(s)	44, 47, 266, 269, 272, 275, 278, 281, 1092
Bme1390I	CCNGG	1 cut(s)	1040
BmrFI	CCNGG	1 cut(s)	1040
BmsI	GCATC	1 cut(s)	830
BpmI	CTGGAG	1 cut(s)	847
BpuMI	CCSGG	1 cut(s)	1040
BsaBI	GATNNNNATC	1 cut(s)	944
BsaI	GGTCTC	1 cut(s)	220
BsaXI	ACNNNNNCTCC	8 cut(s)	9, 39, 231, 261, 543, 573, 864, 894
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 236, 389
Bse3DI	GCAATG	1 cut(s)	584
Bse8I	GATNNNNATC	1 cut(s)	944
BseGI	GGATG	2 cut(s)	789, 1123
BseJI	GATNNNNATC	1 cut(s)	944
BseLI	CCNNNNNNNGG	3 cut(s)	14, 236, 389
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	3 cut(s)	56, 287, 816
BseSI	GKGCMC	3 cut(s)	93, 324, 892
BseXI	GCAGC	2 cut(s)	276, 1102
BsgI	GTGCAG	1 cut(s)	808
Bsh1236I	CGCG	2 cut(s)	813, 1055
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	75, 1040
BslI	CCNNNNNNNGG	3 cut(s)	14, 236, 389
BsmAI	GTCTC	3 cut(s)	61, 220, 292
BsmI	GAATGC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	220
Bsp1286I	GDGCHC	6 cut(s)	93, 324, 354, 408, 427, 892
Bsp1407I	TGTACA	2 cut(s)	109, 464
Bsp143I	GATC	4 cut(s)	57, 288, 814, 945
BspCNI	CTCAG	3 cut(s)	57, 288, 817
BspFNI	CGCG	2 cut(s)	813, 1055
BspPI	GGATC	2 cut(s)	809, 940
BspTNI	GGTCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	584
BsrGI	TGTACA	2 cut(s)	109, 464
BssMI	GATC	4 cut(s)	57, 288, 814, 945
Bst4CI	ACNGT	4 cut(s)	286, 535, 887, 1064
BstAUI	TGTACA	2 cut(s)	109, 464
BstC8I	GCNNGC	4 cut(s)	35, 257, 631, 688
BstDEI	CTNAG	3 cut(s)	65, 296, 825
BstF5I	GGATG	2 cut(s)	789, 1123
BstFNI	CGCG	2 cut(s)	813, 1055
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	4 cut(s)	60, 291, 817, 948
BstMAI	GTCTC	3 cut(s)	61, 220, 292
BstMBI	GATC	4 cut(s)	57, 288, 814, 945
BstMWI	GCNNNNNNNGC	9 cut(s)	39, 97, 261, 270, 273, 276, 279, 328, 935
BstNSI	RCATGY	3 cut(s)	577, 757, 1090
BstSCI	CCNGG	1 cut(s)	1038
BstSLI	GKGCMC	3 cut(s)	93, 324, 892
BstUI	CGCG	2 cut(s)	813, 1055
BstV1I	GCAGC	2 cut(s)	276, 1102
BstX2I	RGATCY	1 cut(s)	945
BstYI	RGATCY	1 cut(s)	945
BtgZI	GCGATG	1 cut(s)	953
BtsCI	GGATG	2 cut(s)	789, 1123
BtsIMutI	CAGTG	3 cut(s)	137, 282, 892
Cac8I	GCNNGC	4 cut(s)	35, 257, 631, 688
CfoI	GCGC	1 cut(s)	813
Csp6I	GTAC	3 cut(s)	110, 465, 664
CviAII	CATG	7 cut(s)	389, 468, 545, 574, 754, 1021, 1087
CviQI	GTAC	3 cut(s)	110, 465, 664
DdeI	CTNAG	3 cut(s)	65, 296, 825
DpnI	GATC	4 cut(s)	59, 290, 816, 947
DpnII	GATC	4 cut(s)	57, 288, 814, 945
EciI	GGCGGA	2 cut(s)	93, 324
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	3 cut(s)	354, 408, 427
Eco31I	GGTCTC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	398
EcoT38I	GRGCYC	3 cut(s)	354, 408, 427
FaeI	CATG	7 cut(s)	392, 471, 548, 577, 757, 1024, 1090
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	7 cut(s)	388, 467, 544, 573, 753, 1020, 1086
Fnu4HI	GCNGC	9 cut(s)	43, 46, 265, 268, 271, 274, 277, 280, 1091
FokI	GGATG	2 cut(s)	796, 1130
FriOI	GRGCYC	3 cut(s)	354, 408, 427
Fsp4HI	GCNGC	9 cut(s)	43, 46, 265, 268, 271, 274, 277, 280, 1091
FspBI	CTAG	3 cut(s)	395, 717, 950
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	9 cut(s)	43, 46, 265, 268, 271, 274, 277, 280, 1091
GsuI	CTGGAG	1 cut(s)	847
HapII	CCGG	2 cut(s)	75, 1040
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	7 cut(s)	392, 471, 548, 577, 757, 1024, 1090
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HincII	GTYRAC	2 cut(s)	596, 883
HindII	GTYRAC	2 cut(s)	596, 883
HinfI	GANTC	5 cut(s)	50, 417, 488, 765, 860
HpaII	CCGG	2 cut(s)	75, 1040
HphI	GGTGA	3 cut(s)	67, 334, 977
Hpy166II	GTNNAC	2 cut(s)	596, 883
Hpy188I	TCNGA	3 cut(s)	239, 711, 826
Hpy188III	TCNNGA	3 cut(s)	395, 864, 917
Hpy8I	GTNNAC	2 cut(s)	596, 883
Hpy99I	CGWCG	2 cut(s)	350, 366
HpyAV	CCTTC	2 cut(s)	641, 786
HpyCH4III	ACNGT	4 cut(s)	286, 535, 887, 1064
HpyCH4IV	ACGT	2 cut(s)	621, 747
HpyCH4V	TGCA	8 cut(s)	577, 629, 686, 789, 821, 853, 929, 1090
HpyF10VI	GCNNNNNNNGC	9 cut(s)	39, 97, 261, 270, 273, 276, 279, 328, 935
HpyF3I	CTNAG	3 cut(s)	65, 296, 825
HpySE526I	ACGT	2 cut(s)	621, 747
Hsp92II	CATG	7 cut(s)	392, 471, 548, 577, 757, 1024, 1090
HspAI	GCGC	1 cut(s)	811
Kzo9I	GATC	4 cut(s)	57, 288, 814, 945
LmnI	GCTCC	2 cut(s)	17, 239
LpnPI	CCDG	8 cut(s)	88, 291, 406, 413, 831, 877, 906, 1053
Lsp1109I	GCAGC	2 cut(s)	276, 1102
LweI	GCATC	1 cut(s)	830
MaeI	CTAG	3 cut(s)	395, 717, 950
MaeII	ACGT	2 cut(s)	621, 747
MaeIII	GTNAC	4 cut(s)	529, 743, 965, 1124
MalI	GATC	4 cut(s)	59, 290, 816, 947
MboI	GATC	4 cut(s)	57, 288, 814, 945
MboII	GAAGA	3 cut(s)	520, 656, 955
MflI	RGATCY	1 cut(s)	945
MhlI	GDGCHC	6 cut(s)	93, 324, 354, 408, 427, 892
MluCI	AATT	3 cut(s)	198, 398, 776
MluI	ACGCGT	1 cut(s)	1053
MlyI	GAGTC	2 cut(s)	44, 854
MmeI	TCCRAC	1 cut(s)	738
MseI	TTAA	2 cut(s)	119, 639
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	2 cut(s)	75, 1040
MspR9I	CCNGG	1 cut(s)	1040
Mva1269I	GAATGC	1 cut(s)	377
MvnI	CGCG	2 cut(s)	813, 1055
MwoI	GCNNNNNNNGC	9 cut(s)	39, 97, 261, 270, 273, 276, 279, 328, 935
NciI	CCSGG	1 cut(s)	1040
NdeII	GATC	4 cut(s)	57, 288, 814, 945
NlaIII	CATG	7 cut(s)	392, 471, 548, 577, 757, 1024, 1090
NmuCI	GTSAC	4 cut(s)	529, 743, 965, 1124
NspI	RCATGY	3 cut(s)	577, 757, 1090
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	417, 488, 765
PflFI	GACNNNGTC	1 cut(s)	611
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	9 cut(s)	44, 47, 266, 269, 272, 275, 278, 281, 1092
PleI	GAGTC	2 cut(s)	44, 854
PpsI	GAGTC	2 cut(s)	44, 854
Psp124BI	GAGCTC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	945
PsyI	GACNNNGTC	1 cut(s)	611
RsaI	GTAC	3 cut(s)	111, 466, 665
RsaNI	GTAC	3 cut(s)	110, 465, 664
RseI	CAYNNNNRTG	1 cut(s)	620
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	119, 639
SatI	GCNGC	9 cut(s)	43, 46, 265, 268, 271, 274, 277, 280, 1091
Sau3AI	GATC	4 cut(s)	57, 288, 814, 945
SchI	GAGTC	2 cut(s)	44, 854
ScrFI	CCNGG	1 cut(s)	1040
SduI	GDGCHC	6 cut(s)	93, 324, 354, 408, 427, 892
SfaNI	GCATC	1 cut(s)	830
SmiMI	CAYNNNNRTG	1 cut(s)	620
Sse9I	AATT	3 cut(s)	198, 398, 776
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	3 cut(s)	395, 717, 950
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	1038
TaaI	ACNGT	4 cut(s)	286, 535, 887, 1064
TaiI	ACGT	2 cut(s)	624, 750
TaqI	TCGA	7 cut(s)	60, 218, 291, 361, 402, 415, 1059
TasI	AATT	3 cut(s)	198, 398, 776
TatI	WGTACW	2 cut(s)	109, 464
TauI	GCSGC	7 cut(s)	45, 48, 270, 273, 276, 279, 282
TfiI	GAWTC	3 cut(s)	417, 488, 765
Tru1I	TTAA	2 cut(s)	119, 639
Tru9I	TTAA	2 cut(s)	119, 639
TscAI	CASTG	3 cut(s)	144, 289, 892
TseFI	GTSAC	4 cut(s)	529, 743, 965, 1124
TseI	GCWGC	2 cut(s)	264, 1090
Tsp45I	GTSAC	4 cut(s)	529, 743, 965, 1124
TspDTI	ATGAA	4 cut(s)	657, 900, 956, 1009
TspRI	CASTG	3 cut(s)	144, 289, 892
Tth111I	GACNNNGTC	1 cut(s)	611
Van91I	CCANNNNNTGG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	394
XceI	RCATGY	3 cut(s)	577, 757, 1090
XspI	CTAG	3 cut(s)	395, 717, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.