Rorug07G0208000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002409
Physical Location & Seq
Forward (+)
18318458 .. 18324346
5889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0208000.1

Sequence Viewer

Length: 1851 bp
ATGGCGGCAGATCAACACCCAAGAAAAGAAATACTGGAGAAGGCTATTCTTGGATACCTAGAGAACAACAACGATATCTCAAACTTGGAACAGTTTGCAGAACAGTTGGCAGCCGAAAACAAAAGCGAAATCAATCACAACGACATTGACAGTGCCATCAAGAGCCTCCGTGGTTTCGGATACATTGAGAATCACGACATTAGAAAGGAGTCATGGGTGCTGACTGAAGAAGGAAAGGGATATGCTGCTGCTGGATCACCTGAAGTGCAAGTGTTTTTGACCATACCAGCAGAAGGTATCACACAAGTAGAATTGAAGAAAAAGCTTGACGAGTCAGTTTTCCAGAGAGTCGACCAAGCTGAAATTGAGGCTCTAAAGAAAAGGGAACTCATCCAGAAGCAAACTCAAAAGGGATACTCGCCGGTTAAAAAGGGTCCAAATTATGCTCCCGTAAGAAAGAAATTTGTTACTGATCTGAATCGTGAAAGTTTGCAGAACGGGGATTGGAAGGAATTGGAATTCAAAGAGTTCAACTTGAATGCTCAAGGTATGCCTAGTAAATTTGGTGCATTACATCCACTCTTGAAGGTAAGGAAGCAAGTGAAGGATATTTTCATACAGATGGGGTATGAGGAGATGGCTACTAACAACTATATTGAGAGCAGCTTCTGGAATTTCGACGCGCTCTTCCAGCCGCAGCAACACCCTGCCCGCGATTCACACGATACATTCTTCCTGAGAACCCCTTCAACTACCAAGGAGCTTCCTGAAGATTATGTTGAGCGCGTGAAGCGTGTGCACGAGAGTGGTGGTTATGAGTCCAGGGGATATGGTTGTGATTGGAAAAGAGAGGAAGCAGAGAAAAATATTCTTAGGACGCACACCACTGCTGTCTCCTCCAGGATACTTTACTTGCTAGCCAAGGAAGCCCAGCAACCTCCTTTTGCTCCCAAAAAGTACTTCTCTATTGATCGTGTGTTCCGAAATGAATCAGTAGATCGAACACATCTTGCAGAGTTCCACCAAATAGAAGGTTGGATATGTGACCGAGGGCTTACTCTTGGTAACTTGATGGGAGTCCTCGAAGACTTCTTCAAGAGGCTGGGCATGTCCAAGCTGAAATTCAAGCCAGCTTATAATCCTTATACTGAGCCTAGCATGGAGATTTTCGGGTATCATAAGGGTTTTCGGAAGTGGGTGGAGATTGGAAATTCTGGCATGTTCAGACCAGAAATGTTGCGTCCTATGGGATTCCCAGAAGATGTTGAGGTTATTGCATGGGGCCTCTCGCTCGAAAGACCAGCCATGATACTCTACGAGATCGATAACATTCGAGAAATGTTTGGACATCAAGTTGATCTTGGTATTTCAGAGGTCCTGAGCTTCATGTTGATTTACAAGATTATGACTATTCTTTGGACGTACTTGTGGAGTATTTGTTGTATGTTTGCTGGAATGTCTGAGCAACTAGTTGCGACTTCACTTGCTCACTTGGTTGAGTCTGCATCATATACTGGATCTGGAAACCCAACTACAAAGTTTCAACAGATTGTCGTGGTGTACAATTCTCTTGGATGGAAGAGGGATGACACAATCCGAATTCCTGTGCTAGCTAGCTTGACCAGATCATCTGTTTACACCTTTCAAAGTAGGGAAAAGTTGACTATGGAAGTTGGTCAAGGAAATATGAAACTTTCTTTTTCCACAGATCAAGGCAAAATGATTAATAATTATGTCAATAGCAGAAGCTTGGTGGAAGAATGGTTCATCAGTCTTACAGCTTTTATAATGGGTATAATGGCAGTAATGTTGAAGCTCCTCCGATTCCTCAGGAGGCTTGCCACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

616

Amino Acids

70.94

Weight (kDa)

6.71

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2d PF01409 177 - 453 3.5e-89 tRNA synthetases class II core domain (F)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1137, 1787
AccI GTMKAC 1 cut(s) 351
AccII CGCG 3 cut(s) 683, 714, 786
AciI CCGC 3 cut(s) 5, 695, 712
AclWI GGATC 2 cut(s) 262, 1525
AcsI RAATTY 7 cut(s) 461, 518, 560, 673, 1121, 1210, 1599
AcuI CTGAAG 3 cut(s) 246, 282, 789
AfaI GTAC 3 cut(s) 959, 1424, 1562
AfiI CCNNNNNNNGG 1 cut(s) 293
AhlI ACTAGT 1 cut(s) 1468
AjnI CCWGG 2 cut(s) 821, 899
AjuI GAANNNNNNNTTGG 4 cut(s) 944, 976, 1106, 1138
AleI CACNNNNGTG 1 cut(s) 804
AloI GAACNNNNNNTCC 2 cut(s) 1748, 1780
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 1 cut(s) 898
Alw44I GTGCAC 1 cut(s) 797
AlwI GGATC 2 cut(s) 262, 1525
AlwNI CAGNNNCTG 1 cut(s) 669
AoxI GGCC 1 cut(s) 1282
ApaLI GTGCAC 1 cut(s) 797
ApeKI GCWGC 5 cut(s) 110, 245, 248, 663, 697
ApoI RAATTY 7 cut(s) 461, 518, 560, 673, 1121, 1210, 1599
AseI ATTAAT 1 cut(s) 1725
Asp700I GAANNNNTTC 1 cut(s) 745
AspLEI GCGC 2 cut(s) 685, 786
AspS9I GGNCC 3 cut(s) 434, 1282, 1375
AsuHPI GGTGA 1 cut(s) 249
AsuNHI GCTAGC 3 cut(s) 916, 1609, 1613
AvaII GGWCC 2 cut(s) 434, 1375
AxyI CCTNAGG 1 cut(s) 1829
BaeGI GKGCMC 1 cut(s) 801
BauI CACGAG 1 cut(s) 800
BbsI GAAGAC 1 cut(s) 1092
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 5 cut(s) 122, 232, 235, 675, 709
BccI CCATC 5 cut(s) 164, 616, 631, 1066, 1569
BciT130I CCWGG 2 cut(s) 823, 901
BciVI GTATCC 4 cut(s) 47, 173, 407, 897
BcoDI GTCTC 1 cut(s) 898
BcuI ACTAGT 1 cut(s) 1468
BfaI CTAG 7 cut(s) 59, 555, 917, 1155, 1469, 1610, 1614
BfuI GTATCC 4 cut(s) 47, 173, 407, 897
BisI GCNGC 7 cut(s) 6, 111, 246, 249, 664, 695, 698
BlsI GCNGC 7 cut(s) 7, 112, 247, 250, 665, 696, 699
BmcAI AGTACT 1 cut(s) 959
Bme1390I CCNGG 2 cut(s) 823, 901
Bme18I GGWCC 2 cut(s) 434, 1375
BmgT120I GGNCC 3 cut(s) 434, 1282, 1375
BmiI GGNNCC 2 cut(s) 435, 1283
BmrFI CCNGG 2 cut(s) 823, 901
BmsI GCATC 1 cut(s) 1514
BmtI GCTAGC 3 cut(s) 920, 1613, 1617
BpiI GAAGAC 1 cut(s) 1092
BpmI CTGGAG 2 cut(s) 56, 883
Bpu10I CCTNAGC 1 cut(s) 1379
BpuEI CTTGAG 1 cut(s) 528
Bsa29I ATCGAT 1 cut(s) 1323
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 5 cut(s) 169, 756, 822, 921, 1048
BsaXI ACNNNNNCTCC 2 cut(s) 1423, 1453
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 2 cut(s) 39, 1519
Bse21I CCTNAGG 1 cut(s) 1829
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 2 cut(s) 823, 901
BseCI ATCGAT 1 cut(s) 1323
BseDI CCNNGG 5 cut(s) 169, 756, 822, 921, 1048
BseGI GGATG 4 cut(s) 390, 574, 1580, 1591
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 5 cut(s) 728, 1140, 1370, 1452, 1843
BseNI ACTGG 2 cut(s) 39, 1519
BseRI GAGGAG 3 cut(s) 647, 886, 1808
BseSI GKGCMC 1 cut(s) 801
BseXI GCAGC 5 cut(s) 122, 232, 235, 675, 709
BseYI CCCAGC 2 cut(s) 930, 1102
Bsh1236I CGCG 3 cut(s) 683, 714, 786
BshFI GGCC 1 cut(s) 1284
BshVI ATCGAT 1 cut(s) 1323
BsiHKAI GWGCWC 1 cut(s) 801
BsiSI CCGG 1 cut(s) 422
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 898
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 1 cut(s) 1284
Bsp1286I GDGCHC 1 cut(s) 801
Bsp1407I TGTACA 1 cut(s) 1560
BspACI CCGC 3 cut(s) 5, 695, 712
BspANI GGCC 1 cut(s) 1284
BspCNI CTCAG 5 cut(s) 729, 1141, 1371, 1453, 1842
BspDI ATCGAT 1 cut(s) 1323
BspFNI CGCG 3 cut(s) 683, 714, 786
BspLI GGNNCC 2 cut(s) 435, 1283
BspOI GCTAGC 3 cut(s) 920, 1613, 1617
BspPI GGATC 2 cut(s) 262, 1525
BspQI GCTCTTC 1 cut(s) 692
BsrFI RCCGGY 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 1560
BsrI ACTGG 2 cut(s) 39, 1519
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 5 cut(s) 169, 756, 822, 921, 1048
BssSI CACGAG 1 cut(s) 800
BssT1I CCWWGG 2 cut(s) 756, 921
Bst2BI CACGAG 1 cut(s) 800
Bst2UI CCWGG 2 cut(s) 823, 901
Bst4CI ACNGT 3 cut(s) 93, 105, 152
Bst6I CTCTTC 2 cut(s) 692, 1574
BstAUI TGTACA 1 cut(s) 1560
BstC8I GCNNGC 6 cut(s) 712, 918, 1131, 1611, 1615, 1839
BstDEI CTNAG 6 cut(s) 737, 872, 1149, 1379, 1461, 1829
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 4 cut(s) 390, 574, 1580, 1591
BstFNI CGCG 3 cut(s) 683, 714, 786
BstHHI GCGC 2 cut(s) 685, 786
BstMAI GTCTC 1 cut(s) 898
BstMWI GCNNNNNNNGC 3 cut(s) 691, 790, 926
BstNI CCWGG 2 cut(s) 823, 901
BstNSI RCATGY 2 cut(s) 1111, 1222
BstSCI CCNGG 2 cut(s) 821, 899
BstSLI GKGCMC 1 cut(s) 801
BstUI CGCG 3 cut(s) 683, 714, 786
BstV1I GCAGC 5 cut(s) 122, 232, 235, 675, 709
BstV2I GAAGAC 1 cut(s) 1092
BstX2I RGATCY 1 cut(s) 1517
BstYI RGATCY 1 cut(s) 1517
Bsu15I ATCGAT 1 cut(s) 1323
Bsu36I CCTNAGG 1 cut(s) 1829
BsuI GTATCC 4 cut(s) 47, 173, 407, 897
BsuRI GGCC 1 cut(s) 1284
BsuTUI ATCGAT 1 cut(s) 1323
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 4 cut(s) 390, 574, 1580, 1591
BtsI GCAGTG 1 cut(s) 885
BtsIMutI CAGTG 2 cut(s) 157, 885
Cac8I GCNNGC 6 cut(s) 712, 918, 1131, 1611, 1615, 1839
CaiI CAGNNNCTG 1 cut(s) 669
CfoI GCGC 2 cut(s) 685, 786
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 3 cut(s) 434, 1282, 1375
ClaI ATCGAT 1 cut(s) 1323
CseI GACGC 3 cut(s) 689, 886, 1229
Csp6I GTAC 3 cut(s) 958, 1423, 1561
CviAII CATG 8 cut(s) 213, 1108, 1159, 1219, 1278, 1306, 1387, 1848
CviQI GTAC 3 cut(s) 958, 1423, 1561
DdeI CTNAG 6 cut(s) 737, 872, 1149, 1379, 1461, 1829
Eam1104I CTCTTC 2 cut(s) 692, 1574
EarI CTCTTC 2 cut(s) 692, 1574
Eco130I CCWWGG 2 cut(s) 756, 921
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 2 cut(s) 434, 1375
Eco57I CTGAAG 3 cut(s) 246, 282, 789
Eco81I CCTNAGG 1 cut(s) 1829
EcoO109I RGGNCCY 2 cut(s) 1282, 1375
EcoRI GAATTC 2 cut(s) 518, 1599
EcoRII CCWGG 2 cut(s) 821, 899
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 756, 921
ErhI CCWWGG 2 cut(s) 756, 921
FaeI CATG 8 cut(s) 216, 1111, 1162, 1222, 1281, 1309, 1390, 1851
FalI AAGNNNNNCTT 2 cut(s) 1344, 1376
FatI CATG 8 cut(s) 212, 1107, 1158, 1218, 1277, 1305, 1386, 1847
FauI CCCGC 1 cut(s) 719
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 7 cut(s) 6, 111, 246, 249, 664, 695, 698
FokI GGATG 4 cut(s) 377, 561, 1587, 1598
Fsp4HI GCNGC 7 cut(s) 6, 111, 246, 249, 664, 695, 698
FspBI CTAG 7 cut(s) 59, 555, 917, 1155, 1469, 1610, 1614
GlaI GCGC 2 cut(s) 684, 785
GluI GCNGC 7 cut(s) 6, 111, 246, 249, 664, 695, 698
GsaI CCCAGC 2 cut(s) 934, 1106
GsuI CTGGAG 2 cut(s) 56, 883
HaeIII GGCC 1 cut(s) 1284
HapII CCGG 1 cut(s) 422
HgaI GACGC 3 cut(s) 689, 886, 1229
HhaI GCGC 2 cut(s) 685, 786
Hin1II CATG 8 cut(s) 216, 1111, 1162, 1222, 1281, 1309, 1390, 1851
Hin6I GCGC 2 cut(s) 683, 784
HinP1I GCGC 2 cut(s) 683, 784
HincII GTYRAC 2 cut(s) 352, 1662
HindII GTYRAC 2 cut(s) 352, 1662
HindIII AAGCTT 2 cut(s) 323, 1747
HpaII CCGG 1 cut(s) 422
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 5 cut(s) 352, 799, 1561, 1636, 1662
Hpy188I TCNGA 9 cut(s) 179, 477, 983, 1191, 1226, 1372, 1462, 1598, 1823
Hpy8I GTNNAC 5 cut(s) 352, 799, 1561, 1636, 1662
Hpy99I CGWCG 1 cut(s) 683
HpyAV CCTTC 8 cut(s) 34, 224, 287, 502, 580, 598, 756, 1025
HpyCH4III ACNGT 3 cut(s) 93, 105, 152
HpyCH4IV ACGT 1 cut(s) 1421
HpyCH4V TGCA 8 cut(s) 98, 268, 493, 569, 799, 1013, 1277, 1505
HpyF10VI GCNNNNNNNGC 3 cut(s) 691, 790, 926
HpyF3I CTNAG 6 cut(s) 737, 872, 1149, 1379, 1461, 1829
HpySE526I ACGT 1 cut(s) 1421
Hsp92II CATG 8 cut(s) 216, 1111, 1162, 1222, 1281, 1309, 1390, 1851
HspAI GCGC 2 cut(s) 683, 784
LguI GCTCTTC 1 cut(s) 692
LmnI GCTCC 4 cut(s) 451, 760, 952, 1821
Lsp1109I GCAGC 5 cut(s) 122, 232, 235, 675, 709
LweI GCATC 1 cut(s) 1514
MaeI CTAG 7 cut(s) 59, 555, 917, 1155, 1469, 1610, 1614
MaeII ACGT 1 cut(s) 1421
MaeIII GTNAC 3 cut(s) 466, 1043, 1064
MflI RGATCY 1 cut(s) 1517
MhlI GDGCHC 1 cut(s) 801
MlyI GAGTC 6 cut(s) 218, 341, 357, 827, 1086, 1508
MmeI TCCRAC 1 cut(s) 1016
MroXI GAANNNNTTC 1 cut(s) 745
MseI TTAA 2 cut(s) 426, 1725
MslI CAYNNNNRTG 2 cut(s) 620, 804
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 2 cut(s) 823, 901
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 2 cut(s) 823, 901
MvnI CGCG 3 cut(s) 683, 714, 786
MwoI GCNNNNNNNGC 3 cut(s) 691, 790, 926
NheI GCTAGC 3 cut(s) 916, 1609, 1613
NlaIII CATG 8 cut(s) 216, 1111, 1162, 1222, 1281, 1309, 1390, 1851
NlaIV GGNNCC 2 cut(s) 435, 1283
NmuCI GTSAC 1 cut(s) 1043
NspI RCATGY 2 cut(s) 1111, 1222
OliI CACNNNNGTG 1 cut(s) 804
PciSI GCTCTTC 1 cut(s) 692
PcsI WCGNNNNNNNCGW 1 cut(s) 979
PctI GAATGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 745
PfeI GAWTC 6 cut(s) 190, 478, 716, 989, 1251, 1824
PfoI TCCNGGA 1 cut(s) 899
PkrI GCNGC 7 cut(s) 7, 112, 247, 250, 665, 696, 699
PleI GAGTC 6 cut(s) 217, 340, 356, 826, 1085, 1507
PpsI GAGTC 6 cut(s) 217, 340, 356, 826, 1085, 1507
PpuMI RGGWCCY 1 cut(s) 1375
PshBI ATTAAT 1 cut(s) 1725
PsiI TTATAA 2 cut(s) 1137, 1787
Psp5II RGGWCCY 1 cut(s) 1375
Psp6I CCWGG 2 cut(s) 821, 899
PspFI CCCAGC 2 cut(s) 930, 1102
PspGI CCWGG 2 cut(s) 821, 899
PspN4I GGNNCC 2 cut(s) 435, 1283
PspPI GGNCC 3 cut(s) 434, 1282, 1375
PspPPI RGGWCCY 1 cut(s) 1375
PstNI CAGNNNCTG 1 cut(s) 669
PsuI RGATCY 1 cut(s) 1517
RsaI GTAC 3 cut(s) 959, 1424, 1562
RsaNI GTAC 3 cut(s) 958, 1423, 1561
RseI CAYNNNNRTG 2 cut(s) 620, 804
SalI GTCGAC 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 2 cut(s) 426, 1725
SatI GCNGC 7 cut(s) 6, 111, 246, 249, 664, 695, 698
Sau96I GGNCC 3 cut(s) 434, 1282, 1375
ScaI AGTACT 1 cut(s) 959
SchI GAGTC 6 cut(s) 218, 341, 357, 827, 1086, 1508
ScrFI CCNGG 2 cut(s) 823, 901
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 1 cut(s) 1514
SinI GGWCC 2 cut(s) 434, 1375
SmiMI CAYNNNNRTG 2 cut(s) 620, 804
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
SpeI ACTAGT 1 cut(s) 1468
SsiI CCGC 3 cut(s) 5, 695, 712
SspI AATATT 1 cut(s) 868
SspMI CTAG 7 cut(s) 59, 555, 917, 1155, 1469, 1610, 1614
StyD4I CCNGG 2 cut(s) 821, 899
StyI CCWWGG 2 cut(s) 756, 921
TaaI ACNGT 3 cut(s) 93, 105, 152
TaiI ACGT 1 cut(s) 1424
TaqI TCGA 7 cut(s) 351, 678, 1000, 1083, 1293, 1323, 1333
TaqII GACCGA 1 cut(s) 1062
TatI WGTACW 2 cut(s) 957, 1560
TauI GCSGC 2 cut(s) 8, 697
TfiI GAWTC 6 cut(s) 190, 478, 716, 989, 1251, 1824
Tru1I TTAA 2 cut(s) 426, 1725
Tru9I TTAA 2 cut(s) 426, 1725
TscAI CASTG 2 cut(s) 157, 892
TseFI GTSAC 1 cut(s) 1043
TseI GCWGC 5 cut(s) 110, 245, 248, 663, 697
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 5 cut(s) 604, 1002, 1375, 1703, 1756
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 157, 892
VneI GTGCAC 1 cut(s) 797
VpaK11BI GGWCC 2 cut(s) 434, 1375
VspI ATTAAT 1 cut(s) 1725
XapI RAATTY 7 cut(s) 461, 518, 560, 673, 1121, 1210, 1599
XceI RCATGY 2 cut(s) 1111, 1222
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 745
XspI CTAG 7 cut(s) 59, 555, 917, 1155, 1469, 1610, 1614
ZrmI AGTACT 1 cut(s) 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.