Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002409

Physical Location & Seq

Genomic Coordinates Reverse (-)

45943253 .. 45945397

Gene Structure 2145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG346800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCTAGGCTCATTCCAAGGGGCAACAATTAAACATATCGTTGAAGAGGTGTTGGCTCGTTTAGAACAGCGAGATGAAGGCAAGCATGGGGAGTGCCAAGATCAATTAAAGTTCAGAGCCAACCTTAATGTGCATGAATTCAGAGGCTCAGAGGCACATTCTAATGATCCATCAAGATTATTGAAGGGGAAAAATATTTGCATGACCCCCCTGCCAGACGAGATATACATTCCTCTGCGCGATCCTGCATTTGAGAGGCATTGGTATTTGTTGGTGGTGCACAAAGATTCCAGATTTGGGGAAATCATTGACAGTGCACCTGATGATGATAGGACTTCATTCCGTGAGGAAGCTGCAAGAATGGCGATGAAGATGCTAGACAATATCTTTTCTGATGATATTAGGGAGGAAATGGGAGTGCTATCTCATTTTGCTGATCTTCCATTCATGGTTAAGCGTAACCACCTGGTTCAAAGAAACATGTTCGACTGTAGTGTGTTTGTAATAAGAAACATGCAGCATTATGGCACACAATGGAATGGGGATGTGAGTAGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

186

Amino Acids

21.61

Weight (kDa)

5.69

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	59 - 175	4.8e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002409)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002091 RLG00000004454 RLG00000033140 RLG00000033141 RLG00000033142
rosa_multiflora	Rmu_sc0000077.1_g000043 Rmu_sc0000361.1_g000004 Rmu_sc0002048.1_g000017 Rmu_sc0007180.1_g000005 Rmu_sc0007223.1_g000007 Rmu_sc0008769.1_g000009
rosa_roxburghii	Rroxscaffold_2G00118160 Rroxscaffold_2G00118170 Rroxscaffold_2G00125280 Rroxscaffold_3G00237010 Rroxscaffold_5G00349960 Rroxscaffold_5G00349970 Rroxscaffold_5G00362900 Rroxscaffold_7G00197790 Rroxscaffold_7G00197870
rosa_rugosa	Rorug07G0208000
rosa_samantha	Rh1BG098800 Rh1CG156600 Rh2DG571500 Rh4AG336300 Rh4BG133300 Rh4BG219500 Rh4DG120500 Rh4DG338800 Rh5DG299800 Rh6AG195900 Rh6BG101300 Rh6BG101400 Rh6BG101500 Rh6CG173400 Rh6CG200800 Rh7AG275000 Rh7DG346800
rosa_wichuraiana	Rw4G010230 Rw5G035120 Rw6G007570 Rw6G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	240
AclWI	GGATC	2 cut(s)	161, 236
AcsI	RAATTY	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	3 cut(s)	44, 184, 473
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw21I	GWGCWC	2 cut(s)	282, 319
Alw44I	GTGCAC	2 cut(s)	278, 315
AlwI	GGATC	2 cut(s)	161, 236
ApaLI	GTGCAC	2 cut(s)	278, 315
ApeKI	GCWGC	2 cut(s)	353, 517
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	240
BaeGI	GKGCMC	2 cut(s)	282, 319
Bbv12I	GWGCWC	2 cut(s)	282, 319
BbvI	GCAGC	2 cut(s)	340, 529
BccI	CCATC	1 cut(s)	178
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BciT130I	CCWGG	1 cut(s)	467
BfaI	CTAG	2 cut(s)	5, 377
BfmI	CTRYAG	1 cut(s)	490
BisI	GCNGC	2 cut(s)	354, 518
BlsI	GCNGC	2 cut(s)	355, 519
Bme1390I	CCNGG	1 cut(s)	467
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	162
BseSI	GKGCMC	2 cut(s)	282, 319
BseXI	GCAGC	2 cut(s)	340, 529
Bsh1236I	CGCG	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	282, 319
BslI	CCNNNNNNNGG	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	282, 319
Bsp143I	GATC	4 cut(s)	100, 166, 241, 436
BspCNI	CTCAG	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	240
BspPI	GGATC	2 cut(s)	161, 236
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	4 cut(s)	100, 166, 241, 436
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	314, 491
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	4 cut(s)	103, 169, 244, 439
BstMBI	GATC	4 cut(s)	100, 166, 241, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	467
BstNSI	RCATGY	2 cut(s)	484, 517
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	490
BstSLI	GKGCMC	2 cut(s)	282, 319
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	340, 529
BtgZI	GCGATG	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	1 cut(s)	240
CsiI	ACCWGGT	1 cut(s)	465
CviAII	CATG	6 cut(s)	86, 134, 202, 448, 481, 514
CviJI	RGCY	6 cut(s)	9, 56, 119, 147, 353, 555
CviKI_1	RGCY	6 cut(s)	9, 56, 119, 147, 353, 555
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	4 cut(s)	102, 168, 243, 438
DpnII	GATC	4 cut(s)	100, 166, 241, 436
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	6 cut(s)	89, 137, 205, 451, 484, 517
FaiI	YATR	9 cut(s)	36, 87, 135, 203, 226, 449, 482, 515, 525
FatI	CATG	6 cut(s)	85, 133, 201, 447, 480, 513
Fnu4HI	GCNGC	2 cut(s)	354, 518
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	2 cut(s)	354, 518
FspBI	CTAG	2 cut(s)	5, 377
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	354, 518
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	89, 137, 205, 451, 484, 517
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	280, 317
Hpy188I	TCNGA	4 cut(s)	116, 143, 151, 394
Hpy188III	TCNNGA	2 cut(s)	174, 291
Hpy8I	GTNNAC	2 cut(s)	280, 317
HpyAV	CCTTC	2 cut(s)	71, 178
HpyCH4III	ACNGT	2 cut(s)	314, 491
HpyCH4V	TGCA	7 cut(s)	133, 201, 248, 280, 317, 356, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	148
Hsp92II	CATG	6 cut(s)	89, 137, 205, 451, 484, 517
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	100, 166, 241, 436
LpnPI	CCDG	7 cut(s)	224, 228, 258, 304, 333, 452, 479
Lsp1109I	GCAGC	2 cut(s)	340, 529
LweI	GCATC	1 cut(s)	363
MabI	ACCWGGT	1 cut(s)	465
MaeI	CTAG	2 cut(s)	5, 377
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	4 cut(s)	102, 168, 243, 438
MboI	GATC	4 cut(s)	100, 166, 241, 436
MboII	GAAGA	3 cut(s)	56, 382, 431
MhlI	GDGCHC	2 cut(s)	282, 319
MluCI	AATT	3 cut(s)	27, 104, 137
MnlI	CCTC	7 cut(s)	40, 137, 145, 243, 249, 340, 400
MseI	TTAA	4 cut(s)	30, 107, 126, 453
MslI	CAYNNNNRTG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	4 cut(s)	100, 166, 241, 436
NlaIII	CATG	6 cut(s)	89, 137, 205, 451, 484, 517
NspI	RCATGY	2 cut(s)	484, 517
PciI	ACATGT	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	355, 519
PscI	ACATGT	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	4 cut(s)	30, 107, 126, 453
SatI	GCNGC	2 cut(s)	354, 518
Sau3AI	GATC	4 cut(s)	100, 166, 241, 436
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	282, 319
SetI	ASST	5 cut(s)	51, 126, 322, 355, 468
SexAI	ACCWGGT	1 cut(s)	465
SfaNI	GCATC	1 cut(s)	363
SfcI	CTRYAG	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	27, 104, 137
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	2 cut(s)	5, 377
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	314, 491
TaqI	TCGA	1 cut(s)	486
TasI	AATT	3 cut(s)	27, 104, 137
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	4 cut(s)	30, 107, 126, 453
Tru9I	TTAA	4 cut(s)	30, 107, 126, 453
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	2 cut(s)	353, 517
TspDTI	ATGAA	5 cut(s)	90, 150, 327, 383, 436
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	319
VneI	GTGCAC	2 cut(s)	278, 315
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	2 cut(s)	484, 517
XspI	CTAG	2 cut(s)	5, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.