Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002409

Physical Location & Seq

Genomic Coordinates Reverse (-)

37994385 .. 37995832

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG219500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGTCAACGGGCGACGCCATTAATCTAGTGAAGAAGAACGAAATACAAGATGAAGAAGTGTGTACGTTTATGTTAACGCCAATGCAATTCATTGAAACCACTCAGGGTCTGACAATGGACCAAGCAAATGTCGTCTCCAGTATCGGCTTCGGGGAGTTACATCACCTGGGATGCAGCACAATATTTGACACGGTATGTGAGATGATGCTTAATAGCATTGATCCTCTAAATGAGATTGTGTTGATACATGGCAAGGAAATACCCTTTGGACCCACAGATTTTGCATGTGTCATGGGCATAAAGGATGGTGGATTAGACATTCAGAACATGGGAGATACGAACGAAAGTCTTGTTAGGTTAATTAGGAAACAATTGGGGGGTGGAGAAGGTGGACTACACATTGCAAGTTTGAAGAAATGTATCATGGAAAGTACACGGGCTGATGAAATATTCAAAATAGCTTATGCACTTTATGCGGTCGCATGCATTTTATGTCCCAACGGAACCAATTTGGTCGACCAGTCATTGATTTCTACTCTAGTAGAGACGAACATGATAAAGGATCTGAATTGGGCAACGTTCTGCTACTATAAGATGCAAGAATCAGTCATATCGATGCAATCGAAAGGGTTCCGCAACCAAGCAATTTGTGTGCTATTCCTACAAAACTTTTACTTTGACGTCGTTGATAATGAATCCAGATGGGTTGACAAAGGAACCACTCCAATCGCTGCATGGAACACTACTTTAGTGAAGAAATTGATTAGGTGGGTGGAACAAAATGGGGGAGTCACCAACACAAACCAGAATGTTTGGAGGAGACAACCTATAATCCATGAGAAGGAGTCTGATGCAAATGGGAAAATATATGATGCAAAACAAATATTGTTGAGTGTAGAAGGCCTGCATAAAAGGGTTTCTAATATGGAACAAAAAGAAAGTCGGCTGATAGAATCAATGGAGAGAATGGAGAGGATGCTAGGCTCATTCCAAGGGGCAACAATTAAACATATCGTTGGAGAGGTGTTGGTTCGTTTAGAACAGCGAGATGAAGGCAAGCATGGATTCAGAGGCTCAGAGGCACAGTCTAATGATCCATCAAGACTATTGAAAGGCAAAAATATTTGCATGAACCCCCTGCCATACGAGGTTTGCATGGCTAGAAAGATGAATCCCCCGCTCAAAGTCCAATCAAAATGTTCATTTAGCCCAGATGGTCCTCCGAAGCCTGCTAAGCGATCAATAAAGGAAAAGAAACTAAGGGCTGTCGGGGTGCAGTCAATGCATATACGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box

Protein Analysis

432

Amino Acids

48.48

Weight (kDa)

7.91

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002409)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002091 RLG00000004454 RLG00000033140 RLG00000033141 RLG00000033142
rosa_multiflora	Rmu_sc0000077.1_g000043 Rmu_sc0000361.1_g000004 Rmu_sc0002048.1_g000017 Rmu_sc0007180.1_g000005 Rmu_sc0007223.1_g000007 Rmu_sc0008769.1_g000009
rosa_roxburghii	Rroxscaffold_2G00118160 Rroxscaffold_2G00118170 Rroxscaffold_2G00125280 Rroxscaffold_3G00237010 Rroxscaffold_5G00349960 Rroxscaffold_5G00349970 Rroxscaffold_5G00362900 Rroxscaffold_7G00197790 Rroxscaffold_7G00197870
rosa_rugosa	Rorug07G0208000
rosa_samantha	Rh1BG098800 Rh1CG156600 Rh2DG571500 Rh4AG336300 Rh4BG133300 Rh4BG219500 Rh4DG120500 Rh4DG338800 Rh5DG299800 Rh6AG195900 Rh6BG101300 Rh6BG101400 Rh6BG101500 Rh6CG173400 Rh6CG200800 Rh7AG275000 Rh7DG346800
rosa_wichuraiana	Rw4G010230 Rw5G035120 Rw6G007570 Rw6G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	684
AccBSI	CCGCTC	1 cut(s)	1180
AccI	GTMKAC	1 cut(s)	516
AciI	CCGC	3 cut(s)	476, 634, 1178
AclI	AACGTT	1 cut(s)	578
AclWI	GGATC	3 cut(s)	215, 570, 1088
AcyI	GRCGYC	2 cut(s)	15, 681
AfaI	GTAC	2 cut(s)	64, 433
AfiI	CCNNNNNNNGG	1 cut(s)	841
AgsI	TTSAA	4 cut(s)	95, 412, 454, 1111
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	1 cut(s)	461
AluI	AGCT	1 cut(s)	461
Alw26I	GTCTC	3 cut(s)	139, 539, 814
AlwI	GGATC	3 cut(s)	215, 570, 1088
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	901
ApeKI	GCWGC	2 cut(s)	174, 731
ArsI	GACNNNNNNTTYG	2 cut(s)	925, 957
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	629
AspS9I	GGNCC	3 cut(s)	118, 269, 1217
AsuHPI	GGTGA	2 cut(s)	155, 784
AvaII	GGWCC	3 cut(s)	118, 269, 1217
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbvI	GCAGC	2 cut(s)	186, 718
BccI	CCATC	4 cut(s)	299, 696, 1105, 1208
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	3 cut(s)	139, 539, 814
BfaI	CTAG	4 cut(s)	26, 539, 980, 1161
BisI	GCNGC	2 cut(s)	175, 732
BlpI	GCTNAGC	1 cut(s)	1233
BlsI	GCNGC	2 cut(s)	176, 733
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	3 cut(s)	118, 269, 1217
BmgT120I	GGNCC	3 cut(s)	118, 269, 1217
BmiI	GGNNCC	4 cut(s)	271, 505, 632, 718
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	7 cut(s)	161, 195, 585, 606, 841, 862, 966
BpmI	CTGGAG	1 cut(s)	121
Bpu1102I	GCTNAGC	1 cut(s)	1233
Bsa29I	ATCGAT	1 cut(s)	614
BsaHI	GRCGYC	2 cut(s)	15, 681
BsaJI	CCNNGG	2 cut(s)	166, 991
Bsc4I	CCNNNNNNNGG	1 cut(s)	841
Bse1I	ACTGG	2 cut(s)	138, 520
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	166, 991
BseGI	GGATG	3 cut(s)	176, 310, 981
BseLI	CCNNNNNNNGG	1 cut(s)	841
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	116, 1089
BseNI	ACTGG	2 cut(s)	138, 520
BseRI	GAGGAG	1 cut(s)	832
BseXI	GCAGC	2 cut(s)	186, 718
BsgI	GTGCAG	1 cut(s)	1295
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	1 cut(s)	903
BshVI	ATCGAT	1 cut(s)	614
BsiEI	CGRYCG	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	841
BsmAI	GTCTC	3 cut(s)	139, 539, 814
BsmBI	CGTCTC	2 cut(s)	139, 539
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	903
Bsp143I	GATC	4 cut(s)	220, 562, 1093, 1238
Bsp1720I	GCTNAGC	1 cut(s)	1233
BspACI	CCGC	3 cut(s)	476, 634, 1178
BspANI	GGCC	1 cut(s)	903
BspCNI	CTCAG	2 cut(s)	115, 1088
BspDI	ATCGAT	1 cut(s)	614
BspLI	GGNNCC	4 cut(s)	271, 505, 632, 718
BspPI	GGATC	3 cut(s)	215, 570, 1088
BsrBI	CCGCTC	1 cut(s)	1180
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	138, 520
BssECI	CCNNGG	2 cut(s)	166, 991
BssMI	GATC	4 cut(s)	220, 562, 1093, 1238
BssNI	GRCGYC	2 cut(s)	15, 681
BssT1I	CCWWGG	1 cut(s)	991
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	193, 1086
BstACI	GRCGYC	2 cut(s)	15, 681
BstAPI	GCANNNNNTGC	2 cut(s)	473, 1282
BstC8I	GCNNGC	4 cut(s)	484, 905, 1058, 1230
BstDEI	CTNAG	4 cut(s)	102, 1075, 1233, 1259
BstF5I	GGATG	3 cut(s)	176, 310, 981
BstKTI	GATC	4 cut(s)	223, 565, 1096, 1241
BstMAI	GTCTC	3 cut(s)	139, 539, 814
BstMBI	GATC	4 cut(s)	220, 562, 1093, 1238
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 1234, 1282
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	2 cut(s)	288, 486
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	186, 718
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
Bsu15I	ATCGAT	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	903
BsuTUI	ATCGAT	1 cut(s)	614
BtsCI	GGATG	3 cut(s)	176, 310, 981
Cac8I	GCNNGC	4 cut(s)	484, 905, 1058, 1230
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	118, 269, 1217
ClaI	ATCGAT	1 cut(s)	614
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	63, 432
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviQI	GTAC	2 cut(s)	63, 432
DdeI	CTNAG	4 cut(s)	102, 1075, 1233, 1259
DpnI	GATC	4 cut(s)	222, 564, 1095, 1240
DpnII	GATC	4 cut(s)	220, 562, 1093, 1238
Eco130I	CCWWGG	1 cut(s)	991
Eco147I	AGGCCT	1 cut(s)	903
Eco47I	GGWCC	3 cut(s)	118, 269, 1217
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	991
EcoT22I	ATGCAT	2 cut(s)	488, 1287
ErhI	CCWWGG	1 cut(s)	991
Esp3I	CGTCTC	2 cut(s)	139, 539
FaqI	GGGAC	1 cut(s)	480
FauI	CCCGC	1 cut(s)	1185
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	175, 732
FokI	GGATG	3 cut(s)	183, 317, 988
Fsp4HI	GCNGC	2 cut(s)	175, 732
FspBI	CTAG	4 cut(s)	26, 539, 980, 1161
GluI	GCNGC	2 cut(s)	175, 732
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	903
HgaI	GACGC	1 cut(s)	23
Hin1I	GRCGYC	2 cut(s)	15, 681
HincII	GTYRAC	4 cut(s)	6, 75, 517, 709
HindII	GTYRAC	4 cut(s)	6, 75, 517, 709
HinfI	GANTC	7 cut(s)	602, 695, 789, 845, 953, 1065, 1171
HpaI	GTTAAC	1 cut(s)	75
HphI	GGTGA	2 cut(s)	155, 784
Hpy166II	GTNNAC	7 cut(s)	6, 63, 75, 392, 434, 517, 709
Hpy188I	TCNGA	7 cut(s)	111, 324, 567, 850, 1070, 1078, 1224
Hpy188III	TCNNGA	2 cut(s)	699, 1101
Hpy8I	GTNNAC	7 cut(s)	6, 63, 75, 392, 434, 517, 709
Hpy99I	CGWCG	2 cut(s)	17, 686
HpyAV	CCTTC	4 cut(s)	380, 835, 893, 1046
HpyCH4III	ACNGT	2 cut(s)	193, 1086
HpyCH4IV	ACGT	3 cut(s)	65, 578, 681
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 1234, 1282
HpyF3I	CTNAG	4 cut(s)	102, 1075, 1233, 1259
HpySE526I	ACGT	3 cut(s)	65, 578, 681
Hsp92I	GRCGYC	2 cut(s)	15, 681
KspAI	GTTAAC	1 cut(s)	75
Kzo9I	GATC	4 cut(s)	220, 562, 1093, 1238
Lsp1109I	GCAGC	2 cut(s)	186, 718
LweI	GCATC	7 cut(s)	161, 195, 585, 606, 841, 862, 966
MaeI	CTAG	4 cut(s)	26, 539, 980, 1161
MaeII	ACGT	3 cut(s)	65, 578, 681
MaeIII	GTNAC	2 cut(s)	156, 790
MalI	GATC	4 cut(s)	222, 564, 1095, 1240
MbiI	CCGCTC	1 cut(s)	1180
MboI	GATC	4 cut(s)	220, 562, 1093, 1238
MboII	GAAGA	5 cut(s)	43, 46, 65, 424, 766
MfeI	CAATTG	1 cut(s)	371
MflI	RGATCY	1 cut(s)	562
MluCI	AATT	8 cut(s)	86, 360, 371, 508, 568, 645, 758, 1002
MlyI	GAGTC	2 cut(s)	798, 854
MmeI	TCCRAC	1 cut(s)	997
MnlI	CCTC	8 cut(s)	234, 810, 966, 1015, 1064, 1072, 1141, 1230
Mph1103I	ATGCAT	2 cut(s)	488, 1287
MroXI	GAANNNNTTC	1 cut(s)	629
MseI	TTAA	5 cut(s)	21, 74, 210, 359, 1005
MslI	CAYNNNNRTG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	473, 1234, 1282
NdeII	GATC	4 cut(s)	220, 562, 1093, 1238
NlaIV	GGNNCC	4 cut(s)	271, 505, 632, 718
NmuCI	GTSAC	1 cut(s)	790
NsiI	ATGCAT	2 cut(s)	488, 1287
NspI	RCATGY	2 cut(s)	288, 486
PaeI	GCATGC	1 cut(s)	486
PceI	AGGCCT	1 cut(s)	903
PcsI	WCGNNNNNNNCGW	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	5 cut(s)	602, 695, 953, 1065, 1171
PkrI	GCNGC	2 cut(s)	176, 733
PleI	GAGTC	2 cut(s)	797, 853
PpsI	GAGTC	2 cut(s)	797, 853
PshBI	ATTAAT	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	4 cut(s)	271, 505, 632, 718
PspPI	GGNCC	3 cut(s)	118, 269, 1217
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	2 cut(s)	64, 433
RsaNI	GTAC	2 cut(s)	63, 432
RseI	CAYNNNNRTG	1 cut(s)	614
SalI	GTCGAC	1 cut(s)	515
SaqAI	TTAA	5 cut(s)	21, 74, 210, 359, 1005
SatI	GCNGC	2 cut(s)	175, 732
Sau3AI	GATC	4 cut(s)	220, 562, 1093, 1238
Sau96I	GGNCC	3 cut(s)	118, 269, 1217
SchI	GAGTC	2 cut(s)	798, 854
ScrFI	CCNGG	1 cut(s)	167
SfaNI	GCATC	7 cut(s)	161, 195, 585, 606, 841, 862, 966
SinI	GGWCC	3 cut(s)	118, 269, 1217
SmiMI	CAYNNNNRTG	1 cut(s)	614
SphI	GCATGC	1 cut(s)	486
Sse9I	AATT	8 cut(s)	86, 360, 371, 508, 568, 645, 758, 1002
SseBI	AGGCCT	1 cut(s)	903
SsiI	CCGC	3 cut(s)	476, 634, 1178
SspI	AATATT	4 cut(s)	183, 450, 885, 1123
SspMI	CTAG	4 cut(s)	26, 539, 980, 1161
StuI	AGGCCT	1 cut(s)	903
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	991
TaaI	ACNGT	2 cut(s)	193, 1086
TaiI	ACGT	3 cut(s)	68, 581, 684
TaqI	TCGA	3 cut(s)	516, 614, 623
TasI	AATT	8 cut(s)	86, 360, 371, 508, 568, 645, 758, 1002
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	5 cut(s)	602, 695, 953, 1065, 1171
Tru1I	TTAA	5 cut(s)	21, 74, 210, 359, 1005
Tru9I	TTAA	5 cut(s)	21, 74, 210, 359, 1005
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	2 cut(s)	174, 731
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	8 cut(s)	66, 79, 459, 708, 1065, 1145, 1184, 1191
TspGWI	ACGGA	1 cut(s)	516
VpaK11BI	GGWCC	3 cut(s)	118, 269, 1217
VspI	ATTAAT	1 cut(s)	21
XceI	RCATGY	2 cut(s)	288, 486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	732
XmiI	GTMKAC	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	4 cut(s)	26, 539, 980, 1161
ZraI	GACGTC	1 cut(s)	682
Zsp2I	ATGCAT	2 cut(s)	488, 1287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.