Rroxscaffold_5G00349970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002409
Physical Location & Seq
Forward (+)
23444237 .. 23446006
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349970.1

Sequence Viewer

Length: 609 bp
ATGGACCAATCATTGGTCTTCCCCCTTGTAGATAAGGACAAGATAAATCAAAAGAATTGGGTGACTTTTTGTTACACCAAGCTCATAGAGTCGGTAATGATAATGCAGTCCACATCGTATAGGCAAGAGTGTGGTTGTATGCTATTTCTCCAAGTATTTTATTTTGAGGTGGTTGCATTGGGATCGAAGTGGGTAGACAAACGACTTACTCCTTTTGCATGCATGGACGAAAAAGGACGTAATAAAGTTGTTGCTTTGTGTAGAAAAGCATGGTGTTTTATGGCAGCGAATGAACCCAAAATTAATCAACCTAAGCGGACAAGGCATAAGGCGGTTGGACAAAATAGTGGGGTGGAGAAGCTATTTGTCAAGAACAGGGAAGCTATTGCGGTTGACGTAAATGCCATGTATGAGCAATTAGTTAGAATGGAGGAAAGGGTCGGAGGTTTGGAACCGGCTTTTGTGAAGATGGCGGAAGCGATGGAGGACATGAAACCAATGTTGCACTCATTTAAGAAGGACATGTCGGTGCGAAGGCGGATCGATTACTTCGGAGAGCGATGCGAGTGGTATACACCAACCGATCCAATGGGCCCTAGGGAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

202

Amino Acids

23.55

Weight (kDa)

8.92

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 13
AccI GTMKAC 2 cut(s) 195, 572
AciI CCGC 5 cut(s) 316, 332, 389, 473, 538
AclWI GGATC 3 cut(s) 190, 548, 578
AfiI CCNNNNNNNGG 2 cut(s) 13, 601
AflIII ACRYGT 1 cut(s) 522
AluBI AGCT 3 cut(s) 82, 361, 383
AluI AGCT 3 cut(s) 82, 361, 383
AlwI GGATC 3 cut(s) 190, 548, 578
AoxI GGCC 1 cut(s) 592
ApaI GGGCCC 1 cut(s) 596
ApeKI GCWGC 1 cut(s) 284
AseI ATTAAT 1 cut(s) 303
AspA2I CCTAGG 1 cut(s) 596
AspS9I GGNCC 3 cut(s) 4, 592, 593
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 596
BaeGI GKGCMC 1 cut(s) 596
BanII GRGCYC 1 cut(s) 596
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 463, 475
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BfaI CTAG 1 cut(s) 597
BisI GCNGC 1 cut(s) 285
BlnI CCTAGG 1 cut(s) 596
BlsI GCNGC 1 cut(s) 286
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 3 cut(s) 4, 592, 593
BmiI GGNNCC 2 cut(s) 453, 594
BmsI GCATC 1 cut(s) 551
BpiI GAAGAC 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 312
Bsa29I ATCGAT 1 cut(s) 543
BsaJI CCNNGG 1 cut(s) 596
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 601
Bse118I RCCGGY 1 cut(s) 454
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 1 cut(s) 596
BseLI CCNNNNNNNGG 2 cut(s) 13, 601
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 1 cut(s) 296
BshFI GGCC 1 cut(s) 594
BshVI ATCGAT 1 cut(s) 543
BsiSI CCGG 1 cut(s) 455
BslI CCNNNNNNNGG 2 cut(s) 13, 601
BsnI GGCC 1 cut(s) 594
Bsp120I GGGCCC 1 cut(s) 592
Bsp1286I GDGCHC 1 cut(s) 596
Bsp143I GATC 3 cut(s) 182, 540, 583
BspACI CCGC 5 cut(s) 316, 332, 389, 473, 538
BspANI GGCC 1 cut(s) 594
BspDI ATCGAT 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 453, 594
BspPI GGATC 3 cut(s) 190, 548, 578
BsrFI RCCGGY 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 3 cut(s) 182, 540, 583
BssNAI GTATAC 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 596
Bst1107I GTATAC 1 cut(s) 573
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 312
BstKTI GATC 3 cut(s) 185, 543, 586
BstMBI GATC 3 cut(s) 182, 540, 583
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNSI RCATGY 2 cut(s) 222, 526
BstSLI GKGCMC 1 cut(s) 596
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 10
BstZ17I GTATAC 1 cut(s) 573
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 1 cut(s) 594
BsuTUI ATCGAT 1 cut(s) 543
BtgZI GCGATG 2 cut(s) 494, 574
Cac8I GCNNGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 3 cut(s) 4, 592, 593
ClaI ATCGAT 1 cut(s) 543
CviAII CATG 6 cut(s) 219, 223, 270, 406, 490, 523
CviJI RGCY 5 cut(s) 82, 361, 383, 458, 594
CviKI_1 RGCY 5 cut(s) 82, 361, 383, 458, 594
DdeI CTNAG 1 cut(s) 312
DpnI GATC 3 cut(s) 184, 542, 585
DpnII GATC 3 cut(s) 182, 540, 583
EciI GGCGGA 2 cut(s) 488, 553
Eco130I CCWWGG 1 cut(s) 596
Eco24I GRGCYC 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 593
EcoT14I CCWWGG 1 cut(s) 596
EcoT22I ATGCAT 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 596
FaeI CATG 6 cut(s) 222, 226, 273, 409, 493, 526
FatI CATG 6 cut(s) 218, 222, 269, 405, 489, 522
FblI GTMKAC 2 cut(s) 195, 572
Fnu4HI GCNGC 1 cut(s) 285
FriOI GRGCYC 1 cut(s) 596
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 597
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 594
HapII CCGG 1 cut(s) 455
Hin1II CATG 6 cut(s) 222, 226, 273, 409, 493, 526
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 455
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 4 cut(s) 111, 196, 394, 573
Hpy188I TCNGA 2 cut(s) 443, 554
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 4 cut(s) 111, 196, 394, 573
HpyAV CCTTC 2 cut(s) 511, 528
HpyCH4IV ACGT 2 cut(s) 238, 396
HpyCH4V TGCA 5 cut(s) 106, 176, 218, 222, 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 2 cut(s) 238, 396
Hsp92II CATG 6 cut(s) 222, 226, 273, 409, 493, 526
Kzo9I GATC 3 cut(s) 182, 540, 583
LpnPI CCDG 2 cut(s) 361, 468
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 551
MaeI CTAG 1 cut(s) 597
MaeII ACGT 2 cut(s) 238, 396
MaeIII GTNAC 2 cut(s) 61, 71
MalI GATC 3 cut(s) 184, 542, 585
MboI GATC 3 cut(s) 182, 540, 583
MboII GAAGA 2 cut(s) 10, 478
MhlI GDGCHC 1 cut(s) 596
MluCI AATT 3 cut(s) 55, 300, 416
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 316, 421
MnlI CCTC 5 cut(s) 160, 424, 437, 478, 595
Mph1103I ATGCAT 1 cut(s) 224
MseI TTAA 2 cut(s) 303, 513
MslI CAYNNNNRTG 1 cut(s) 527
MspI CCGG 1 cut(s) 455
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeII GATC 3 cut(s) 182, 540, 583
NlaIII CATG 6 cut(s) 222, 226, 273, 409, 493, 526
NlaIV GGNNCC 2 cut(s) 453, 594
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 2 cut(s) 222, 526
PaeI GCATGC 1 cut(s) 222
PciI ACATGT 1 cut(s) 522
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PscI ACATGT 1 cut(s) 522
PshBI ATTAAT 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 453, 594
PspOMI GGGCCC 1 cut(s) 592
PspPI GGNCC 3 cut(s) 4, 592, 593
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 2 cut(s) 303, 513
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 3 cut(s) 182, 540, 583
Sau96I GGNCC 3 cut(s) 4, 592, 593
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 596
SetI ASST 8 cut(s) 84, 171, 241, 313, 363, 385, 399, 448
SfaNI GCATC 1 cut(s) 551
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 527
SphI GCATGC 1 cut(s) 222
Sse9I AATT 3 cut(s) 55, 300, 416
SsiI CCGC 5 cut(s) 316, 332, 389, 473, 538
SspMI CTAG 1 cut(s) 597
StyI CCWWGG 1 cut(s) 596
TaiI ACGT 2 cut(s) 241, 399
TaqI TCGA 2 cut(s) 185, 543
TasI AATT 3 cut(s) 55, 300, 416
Tru1I TTAA 2 cut(s) 303, 513
Tru9I TTAA 2 cut(s) 303, 513
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 306, 506
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 303
XceI RCATGY 2 cut(s) 222, 526
XmaJI CCTAGG 1 cut(s) 596
XmiI GTMKAC 2 cut(s) 195, 572
XspI CTAG 1 cut(s) 597
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.