Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Reverse (-)

34576801 .. 34579668

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAGCGAGATATTCTTCAATTGAAAGAACAAGCTACCAGGGAGCATACTGCAACACTCGCTGCCCAAAACTGGCTCGCCGAGATCGAGGATGAGAACTGCATGCTCCAAGCTACACTTCAACACTTGGTACTATGCACGAAATTGAAAAGCTTGACCATGGTGGATTCTGATTCTTCTCTGATGCAAATGAAGCATTATGCAGGCATAAGTTGTTTGACTGTATTGAAGGCATCAACATCTGGGTCTGATTACCTATTTACTGGGAGCCGTGATGGAACACTCAAAAGATGGGATGTGGCTGAAGATGCCGCTACCTCCTCAGCAACCTTTGAGTCTCATGTGGATTGGGTATTCATTTTCCTTCCAATATTTAAATCTAGTATTTGGCAGGACTTGCAATATGATCTAGATGCTAGACTGATGATACTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

DUF3337 WD40

Protein Analysis

146

Amino Acids

16.41

Weight (kDa)

5.07

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	5 cut(s)	20, 25, 122, 148, 229
AjnI	CCWGG	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	3 cut(s)	35, 113, 153
AluI	AGCT	3 cut(s)	35, 113, 153
Alw26I	GTCTC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	2 cut(s)	269, 285
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	3 cut(s)	381, 410, 417
BisI	GCNGC	2 cut(s)	63, 312
BlsI	GCNGC	2 cut(s)	64, 313
Bme1390I	CCNGG	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	4 cut(s)	174, 242, 298, 403
BmuI	ACTGGG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	39, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	77, 268
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	2 cut(s)	39, 159
BseGI	GGATG	2 cut(s)	97, 301
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	77, 268
BseRI	GAGGAG	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	84, 406
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	77, 268
BssECI	CCNNGG	2 cut(s)	39, 159
BssMI	GATC	2 cut(s)	84, 406
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstC8I	GCNNGC	3 cut(s)	78, 104, 205
BstDEI	CTNAG	1 cut(s)	322
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	97, 301
BstKTI	GATC	2 cut(s)	87, 409
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	2 cut(s)	84, 406
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 193, 308, 397
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	97, 301
Cac8I	GCNNGC	3 cut(s)	78, 104, 205
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	3 cut(s)	103, 160, 341
CviJI	RGCY	6 cut(s)	35, 76, 113, 153, 270, 302
CviKI_1	RGCY	6 cut(s)	35, 76, 113, 153, 270, 302
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	322
DpnI	GATC	2 cut(s)	86, 408
DpnII	GATC	2 cut(s)	84, 406
DraI	TTTAAA	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	106, 163, 344
FaiI	YATR	9 cut(s)	48, 104, 136, 161, 201, 209, 342, 405, 436
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	3 cut(s)	102, 159, 340
Fnu4HI	GCNGC	2 cut(s)	63, 312
FokI	GGATG	2 cut(s)	104, 308
Fsp4HI	GCNGC	2 cut(s)	63, 312
FspBI	CTAG	3 cut(s)	381, 410, 417
GluI	GCNGC	2 cut(s)	63, 312
Hin1II	CATG	3 cut(s)	106, 163, 344
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	3 cut(s)	167, 173, 335
Hpy188I	TCNGA	3 cut(s)	172, 183, 250
Hpy188III	TCNNGA	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	223, 374
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	6 cut(s)	53, 102, 138, 187, 203, 400
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 193, 308, 397
HpyF3I	CTNAG	1 cut(s)	322
Hsp92II	CATG	3 cut(s)	106, 163, 344
Kzo9I	GATC	2 cut(s)	84, 406
LmnI	GCTCC	3 cut(s)	43, 111, 267
LpnPI	CCDG	7 cut(s)	25, 52, 58, 189, 228, 249, 377
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	4 cut(s)	174, 242, 298, 403
MaeI	CTAG	3 cut(s)	381, 410, 417
MalI	GATC	2 cut(s)	86, 408
MboI	GATC	2 cut(s)	84, 406
MboII	GAAGA	3 cut(s)	8, 168, 317
MfeI	CAATTG	1 cut(s)	20
MluCI	AATT	2 cut(s)	20, 143
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	3 cut(s)	82, 328, 331
MseI	TTAA	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	40
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	4 cut(s)	59, 193, 308, 397
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	84, 406
NlaIII	CATG	3 cut(s)	106, 163, 344
NlaIV	GGNNCC	1 cut(s)	269
NmeAIII	GCCGAG	1 cut(s)	106
NspI	RCATGY	1 cut(s)	106
PaeI	GCATGC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	167, 173
PkrI	GCNGC	2 cut(s)	64, 313
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	2 cut(s)	63, 312
Sau3AI	GATC	2 cut(s)	84, 406
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	6 cut(s)	37, 115, 155, 258, 320, 332
SfaNI	GCATC	4 cut(s)	174, 242, 298, 403
SmiI	ATTTAAAT	1 cut(s)	376
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	2 cut(s)	20, 143
SsiI	CCGC	1 cut(s)	312
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	3 cut(s)	381, 410, 417
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	159
SwaI	ATTTAAAT	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	20, 143
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	167, 173
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	3 cut(s)	17, 206, 346
XbaI	TCTAGA	1 cut(s)	409
XceI	RCATGY	1 cut(s)	106
XspI	CTAG	3 cut(s)	381, 410, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.