Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Forward (+)

636484 .. 638982

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG004700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTGGTTTCCGATTCTTCTTGCTCTGATGCAAATAAAGATTTTGCTCGGGGAAATTGTTTTAACCCAGAAGTTATTAGCACTACAAAATTCAGGGATGCAGTTGCAAATGACGTCTTAATGGGGAAAGCCTGTTCCCCAATTACTCTTGGACAAGAGTATTGGCTGCCCATTCTTACTGGTGCCAACACCAGGCTAAGCAACATGGCAAGCACCAGGCTTGTCCCAAGGATCACAGACAGTAGCTCAACTTGTAGACATGGAGCTCCAATGTACTCGGCATTGTATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

97

Amino Acids

10.53

Weight (kDa)

7.66

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	192
AjnI	CCWGG	2 cut(s)	191, 215
AloI	GAACNNNNNNTCC	2 cut(s)	118, 150
AluBI	AGCT	2 cut(s)	246, 266
AluI	AGCT	2 cut(s)	246, 266
Alw21I	GWGCWC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	153
BciT130I	CCWGG	2 cut(s)	193, 217
BisI	GCNGC	1 cut(s)	167
BlpI	GCTNAGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	193, 217
BmeT110I	CYCGRG	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	193, 217
BmsI	GCATC	2 cut(s)	19, 88
Bpu1102I	GCTNAGC	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	193, 217
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	231
Bsp1720I	GCTNAGC	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	2 cut(s)	193, 217
Bst4CI	ACNGT	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstNI	CCWGG	2 cut(s)	193, 217
BstSCI	CCNGG	2 cut(s)	191, 215
BstV1I	GCAGC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	2 cut(s)	205, 260
CviJI	RGCY	6 cut(s)	131, 166, 196, 220, 246, 266
CviKI_1	RGCY	6 cut(s)	131, 166, 196, 220, 246, 266
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	191, 215
EcoT14I	CCWWGG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	208, 263
FaiI	YATR	4 cut(s)	206, 261, 288, 290
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	204, 259
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	208, 263
HinfI	GANTC	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	13, 28
Hpy8I	GTNNAC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	32, 101, 107
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	208, 263
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	263, 271
LpnPI	CCDG	8 cut(s)	79, 81, 145, 165, 178, 202, 205, 229
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	2 cut(s)	19, 88
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	3 cut(s)	55, 89, 141
MseI	TTAA	2 cut(s)	63, 119
MspR9I	CCNGG	2 cut(s)	193, 217
MvaI	CCWGG	2 cut(s)	193, 217
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	2 cut(s)	208, 263
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	191, 215
PspGI	CCWGG	2 cut(s)	191, 215
PspN4I	GGNNCC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	63, 119
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	231
ScrFI	CCNGG	2 cut(s)	193, 217
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	3 cut(s)	117, 248, 268
SfaNI	GCATC	2 cut(s)	19, 88
Sse9I	AATT	3 cut(s)	55, 89, 141
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	191, 215
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	117
TasI	AATT	3 cut(s)	55, 89, 141
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	63, 119
Tru9I	TTAA	2 cut(s)	63, 119
TseI	GCWGC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	256
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.