Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Forward (+)

59812768 .. 59820268

Gene Structure 7501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG441400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGAGGGTCCGGATTCGGACGGCGAGGAAATCGGGGAGTCGAAGTGGGTCGGGTCGAGTCTGGGCCAGTGGATGCGCACTCTTCCGGACTTCTTCTGTGAATTCGGCGACTCAGAACAACCGAAGTGTGGCAATGATGCTCCAATTAGTGCTGCACAAATGTTAGGGGAAGTGAGTAGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF620

Protein Analysis

61

Amino Acids

6.62

Weight (kDa)

4.05

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	77
AccIII	TCCGGA	2 cut(s)	10, 85
AcsI	RAATTY	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	128
Aor13HI	TCCGGA	2 cut(s)	10, 85
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	8, 64
AvaII	GGWCC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	8, 64
BmiI	GGNNCC	1 cut(s)	9
BmsI	GCATC	2 cut(s)	63, 127
BsaWI	WCCGGW	2 cut(s)	10, 85
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	139
BseAI	TCCGGA	2 cut(s)	10, 85
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	11, 86
BslI	CCNNNNNNNGG	1 cut(s)	128
BsnI	GGCC	1 cut(s)	66
Bsp13I	TCCGGA	2 cut(s)	10, 85
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	125
BspEI	TCCGGA	2 cut(s)	10, 85
BspLI	GGNNCC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	8, 64
CviJI	RGCY	1 cut(s)	66
CviKI_1	RGCY	1 cut(s)	66
DdeI	CTNAG	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	101
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	153
FspAI	RTGCGCAY	1 cut(s)	77
FspI	TGCGCA	1 cut(s)	77
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	2 cut(s)	11, 86
HhaI	GCGC	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	4 cut(s)	14, 38, 58, 110
HpaII	CCGG	2 cut(s)	11, 86
Hpy188I	TCNGA	2 cut(s)	19, 115
Hpy188III	TCNNGA	2 cut(s)	11, 86
HpyCH4V	TGCA	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	2 cut(s)	10, 85
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	4 cut(s)	24, 47, 80, 99
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	63, 127
MboII	GAAGA	2 cut(s)	74, 85
MluCI	AATT	2 cut(s)	101, 144
MlyI	GAGTC	3 cut(s)	47, 67, 104
MnlI	CCTC	1 cut(s)	19
MroI	TCCGGA	2 cut(s)	10, 85
MspI	CCGG	2 cut(s)	11, 86
NlaIV	GGNNCC	1 cut(s)	9
NsbI	TGCGCA	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	3 cut(s)	46, 66, 104
PpsI	GAGTC	3 cut(s)	46, 66, 104
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	8, 64
SatI	GCNGC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	8, 64
SchI	GAGTC	3 cut(s)	47, 67, 104
SetI	ASST	1 cut(s)	182
SfaNI	GCATC	2 cut(s)	63, 127
SgeI	CNNG	8 cut(s)	23, 37, 46, 64, 69, 74, 79, 98
SinI	GGWCC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	101, 144
TaqI	TCGA	2 cut(s)	41, 56
TasI	AATT	2 cut(s)	101, 144
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	1 cut(s)	152
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.