Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Forward (+)

18142121 .. 18143345

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTACAGAGTCAGTCAGAGTAGTCCACAGTTTCAGCTTCAATGGGTCTCAGACAAGGCCTACCATCCCTCTCTCCCCAGCTCGCTTTCTGGGTCTTCGTCCTCCTCGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCACCTCATCTTCACTTTCCCAGTTCTTTGGGAATCTGCGTCTCACCTCCAACTCCTCAAAGACCTCTCATTTGCGCCAACACAGCCGGAGAAACCACTCTATTTTCGCCATGGCTGCCAATGATGGAAAGCGTGCAGTACCATTGGTAGATTATCGAAATATTGGAATTATGGCTCACATAGATGCAGGGAAGACTACTACAACTGAACGGAATTTGTACTATACTAGAAGAAACTATCAAATTGGGGAAGTGCATGAAGGAACAACAACTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009845 GO:0009941 GO:0009987 GO:0016043 GO:0017076 GO:0030554 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0071840 GO:0090351 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

148

Amino Acids

16.13

Weight (kDa)

11.3

Isoelectric Point (pI)

76.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	108 - 144	2.2e-08	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	382
AfaI	GTAC	2 cut(s)	309, 389
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	2 cut(s)	39, 83
AluI	AGCT	2 cut(s)	39, 83
Alw26I	GTCTC	2 cut(s)	54, 215
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AspLEI	GCGC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	163, 205
BbsI	GAAGAC	2 cut(s)	89, 368
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	2 cut(s)	74, 287
BcoDI	GTCTC	2 cut(s)	54, 215
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	2 cut(s)	89, 368
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	96, 214
BseXI	GCAGC	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	256
BsmAI	GTCTC	2 cut(s)	54, 215
BsmBI	CGTCTC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	279
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	85, 303
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	246
BstMAI	GTCTC	2 cut(s)	54, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 284
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	2 cut(s)	89, 368
BstXI	CCANNNNNNTGG	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	85, 303
CfoI	GCGC	1 cut(s)	246
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	308, 388
CviAII	CATG	2 cut(s)	280, 425
CviJI	RGCY	7 cut(s)	5, 39, 61, 83, 255, 284, 344
CviKI_1	RGCY	7 cut(s)	5, 39, 61, 83, 255, 284, 344
CviQI	GTAC	2 cut(s)	308, 388
DdeI	CTNAG	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	2 cut(s)	283, 428
FaiI	YATR	7 cut(s)	281, 341, 350, 393, 426, 443, 445
FatI	CATG	2 cut(s)	279, 424
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	285
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	283, 428
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	2 cut(s)	11, 202
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	2 cut(s)	163, 205
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	20, 54
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	305, 356, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 284
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	283, 428
HspAI	GCGC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	77, 93, 203, 269, 342
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	396
MluCI	AATT	3 cut(s)	336, 382, 411
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	7 cut(s)	81, 114, 117, 184, 226, 235, 244
MslI	CAYNNNNRTG	1 cut(s)	351
MspI	CCGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	252, 284
NcoI	CCATGG	1 cut(s)	279
NlaIII	CATG	2 cut(s)	283, 428
PceI	AGGCCT	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	79
RsaI	GTAC	2 cut(s)	309, 389
RsaNI	GTAC	2 cut(s)	308, 388
RseI	CAYNNNNRTG	1 cut(s)	351
SatI	GCNGC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	20
SetI	ASST	5 cut(s)	41, 85, 176, 218, 236
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	336, 382, 411
SseBI	AGGCCT	1 cut(s)	61
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	1 cut(s)	396
StuI	AGGCCT	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	325
TasI	AATT	3 cut(s)	336, 382, 411
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	441
TspGWI	ACGGA	1 cut(s)	394
XapI	RAATTY	1 cut(s)	382
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.