Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Reverse (-)

30013408 .. 30014973

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTCACATCGGTAGACTTGTTTGTGCACTCATAGGATATTTTCTTGATCACCTTTATATTGTAAAGAGTTCTGTCTTTGCAAGTTTTAAGAGTGTGTTCTCTTCCTTTGTACCTTTTAACAAGGCTAATGCAACCATGTACTGGTTGAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTCTCTTGGTATGATAACAAATGGGCTTCAGTTTTAAGTATGTCTGCTCTTACTGGAGAATCACTTCTTGTGACCAAAAATCCTGGTGATGTGGTTTACTTAGGATCAACATGCAAACAAGGAGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

111

Amino Acids

12.24

Weight (kDa)

8.58

Isoelectric Point (pI)

27.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	114, 143
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	211
Alw44I	GTGCAC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	316
ApaLI	GTGCAC	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	44, 302
BaeGI	GKGCMC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	149, 262
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	149, 262
BseSI	GKGCMC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	49, 308
BspPI	GGATC	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	149, 262
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	49, 308
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	304
BstKTI	GATC	2 cut(s)	52, 311
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	49, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	113, 142
CviAII	CATG	2 cut(s)	139, 315
CviJI	RGCY	5 cut(s)	5, 128, 170, 202, 230
CviKI_1	RGCY	5 cut(s)	5, 128, 170, 202, 230
CviQI	GTAC	2 cut(s)	113, 142
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	2 cut(s)	51, 310
DpnII	GATC	2 cut(s)	49, 308
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	142, 318
FaiI	YATR	6 cut(s)	35, 60, 140, 216, 245, 316
FalI	AAGNNNNNCTT	1 cut(s)	315
FatI	CATG	2 cut(s)	138, 314
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	16
GsuI	CTGGAG	1 cut(s)	279
Hin1II	CATG	2 cut(s)	142, 318
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	263
HphI	GGTGA	2 cut(s)	44, 302
Hpy166II	GTNNAC	3 cut(s)	17, 29, 301
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	3 cut(s)	17, 29, 301
HpyCH4V	TGCA	4 cut(s)	29, 83, 134, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	304
Hsp92II	CATG	2 cut(s)	142, 318
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	49, 308
LpnPI	CCDG	5 cut(s)	130, 156, 243, 273, 300
LweI	GCATC	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	51, 310
MboI	GATC	2 cut(s)	49, 308
MboII	GAAGA	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	4 cut(s)	90, 120, 239, 334
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	2 cut(s)	49, 308
NlaIII	CATG	2 cut(s)	142, 318
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
RsaI	GTAC	2 cut(s)	114, 143
RsaNI	GTAC	2 cut(s)	113, 142
SaqAI	TTAA	4 cut(s)	90, 120, 239, 334
Sau3AI	GATC	2 cut(s)	49, 308
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	3 cut(s)	57, 118, 204
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	165
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	174
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	4 cut(s)	90, 120, 239, 334
Tru9I	TTAA	4 cut(s)	90, 120, 239, 334
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	144
VneI	GTGCAC	1 cut(s)	27
XceI	RCATGY	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.